RNA–Protein interactions for RNA: ENST00000600718.5

SHKBP1-224, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-224ENST00000600718 IGIPA6NJ69 53 aa12.42□□□□□ -0.42
SHKBP1-224ENST00000600718 TMEM238C9JI98 176 aa12.42□□□□□ -0.42
SHKBP1-224ENST00000600718 DNAH3Q8TD57 4116 aa12.42□□□□□ -0.42
SHKBP1-224ENST00000600718 KRTAP21-3Q3LHN1 58 aa12.41□□□□□ -0.42
SHKBP1-224ENST00000600718 OR5A1Q8NGJ0 315 aa12.41□□□□□ -0.42
SHKBP1-224ENST00000600718 TIMM17AQ99595 171 aa12.41□□□□□ -0.42
SHKBP1-224ENST00000600718 TM2D3Q9BRN9 247 aa12.41□□□□□ -0.42
SHKBP1-224ENST00000600718 CHCHD7Q9BUK0 85 aa12.41□□□□□ -0.42
SHKBP1-224ENST00000600718 GTSF1LQ9H1H1 148 aa12.4□□□□□ -0.42
SHKBP1-224ENST00000600718 TRAV12-1A0A0B4J245 112 aa12.39□□□□□ -0.43
SHKBP1-224ENST00000600718 H3BUT2 72 aa12.39□□□□□ -0.43
SHKBP1-224ENST00000600718 PAX4O43316 350 aa12.39□□□□□ -0.43
SHKBP1-224ENST00000600718 LINC00694P0DN24 101 aa12.39□□□□□ -0.43
SHKBP1-224ENST00000600718 GYPEP15421 78 aa12.39□□□□□ -0.43
SHKBP1-224ENST00000600718 ODF1Q14990 250 aa12.39□□□□□ -0.43
SHKBP1-224ENST00000600718 C12orf74Q32Q52 190 aa12.39□□□□□ -0.43
SHKBP1-224ENST00000600718 NBEAL2Q6ZNJ1 2754 aa12.38□□□□□ -0.43
SHKBP1-224ENST00000600718 MRAPQ8TCY5 172 aa12.38□□□□□ -0.43
SHKBP1-224ENST00000600718 BAALCQ8WXS3 180 aa12.38□□□□□ -0.43
SHKBP1-224ENST00000600718 PYGO1Q9Y3Y4 419 aa12.38□□□□□ -0.43
SHKBP1-224ENST00000600718 A0A087WX48 190 aa12.38□□□□□ -0.43
SHKBP1-224ENST00000600718 F5H768 121 aa12.38□□□□□ -0.43
SHKBP1-224ENST00000600718 NTM-AS1Q6ZSK4 140 aa12.38□□□□□ -0.43
SHKBP1-224ENST00000600718 A0A0J9YWU9 116 aa12.37□□□□□ -0.43
SHKBP1-224ENST00000600718 A0A1W2PPM0 123 aa12.36□□□□□ -0.43
SHKBP1-224ENST00000600718 VSIG2Q96IQ7 327 aa12.36□□□□□ -0.43
SHKBP1-224ENST00000600718 SPANXA1Q9NS26 97 aa12.36□□□□□ -0.43
SHKBP1-224ENST00000600718 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.35□□□□□ -0.43
SHKBP1-224ENST00000600718 IGKV2-29A2NJV5 120 aaPredicted RBP12.35□□□□□ -0.43
SHKBP1-224ENST00000600718 HTN3P15516 51 aa12.35□□□□□ -0.43
SHKBP1-224ENST00000600718 PMVKQ15126 192 aa12.35□□□□□ -0.43
SHKBP1-224ENST00000600718 PAPPA-AS1Q5QFB9 102 aa12.35□□□□□ -0.43
SHKBP1-224ENST00000600718 ATP6V0E2Q8NHE4 81 aa12.35□□□□□ -0.43
SHKBP1-224ENST00000600718 PRSS29PA6NIE9 313 aa12.34□□□□□ -0.43
SHKBP1-224ENST00000600718 TIMM21Q9BVV7 248 aa12.34□□□□□ -0.43
SHKBP1-224ENST00000600718 UBE2D4Q9Y2X8 147 aa12.34□□□□□ -0.43
SHKBP1-224ENST00000600718 SPCS1Q9Y6A9 102 aa12.34□□□□□ -0.43
SHKBP1-224ENST00000600718 TRAV26-1A0A087WT03 109 aa12.34□□□□□ -0.43
SHKBP1-224ENST00000600718 A0A0J9YY99 117 aa12.34□□□□□ -0.43
SHKBP1-224ENST00000600718 DPM2O94777 84 aa12.34□□□□□ -0.43
SHKBP1-224ENST00000600718 F8VRH5 84 aa12.33□□□□□ -0.44
SHKBP1-224ENST00000600718 FABP2P12104 132 aa12.33□□□□□ -0.44
SHKBP1-224ENST00000600718 TMEM243Q9BU79 118 aa12.33□□□□□ -0.44
SHKBP1-224ENST00000600718 MRPL35Q9NZE8 188 aaKnown RBP12.33□□□□□ -0.44
SHKBP1-224ENST00000600718 HIGD1BQ9P298 99 aa12.33□□□□□ -0.44
SHKBP1-224ENST00000600718 IGLV4-3A0A075B6K6 122 aa12.32□□□□□ -0.44
SHKBP1-224ENST00000600718 TRBV25-1A0A075B6N4 114 aa12.32□□□□□ -0.44
SHKBP1-224ENST00000600718 IGKCP01834 107 aa12.32□□□□□ -0.44
SHKBP1-224ENST00000600718 SMAGPQ0VAQ4 97 aa12.32□□□□□ -0.44
SHKBP1-224ENST00000600718 TRBV6-8A0A0A6YYG3 113 aa12.32□□□□□ -0.44
SHKBP1-224ENST00000600718 H7C423 109 aa12.32□□□□□ -0.44
SHKBP1-224ENST00000600718 C11orf45Q8TAV5 145 aa12.32□□□□□ -0.44
SHKBP1-224ENST00000600718 OPRPNQ99935 248 aaPredicted RBP12.32□□□□□ -0.44
SHKBP1-224ENST00000600718 VCX2Q9H322 139 aa12.32□□□□□ -0.44
SHKBP1-224ENST00000600718 SMIM13P0DJ93 91 aa12.31□□□□□ -0.44
SHKBP1-224ENST00000600718 PLNP26678 52 aa12.31□□□□□ -0.44
SHKBP1-224ENST00000600718 NMUP48645 174 aa12.3□□□□□ -0.44
SHKBP1-224ENST00000600718 MRPL23Q16540 153 aaKnown RBP12.3□□□□□ -0.44
SHKBP1-224ENST00000600718 Q6ZTC4 211 aa12.3□□□□□ -0.44
SHKBP1-224ENST00000600718 SH2D6Q7Z4S9 175 aa12.3□□□□□ -0.44
SHKBP1-224ENST00000600718 PCP2Q8IVA1 136 aa12.3□□□□□ -0.44
SHKBP1-224ENST00000600718 RAB37Q96AX2 223 aa12.3□□□□□ -0.44
SHKBP1-224ENST00000600718 MRPS36P82909 103 aaKnown RBP12.3□□□□□ -0.44
SHKBP1-224ENST00000600718 CEMP1Q6PRD7 247 aaPredicted RBP12.3□□□□□ -0.44
SHKBP1-224ENST00000600718 FAM104AQ969W3 186 aa12.3□□□□□ -0.44
SHKBP1-224ENST00000600718 NAA38Q9BRA0 125 aaKnown RBP12.3□□□□□ -0.44
SHKBP1-224ENST00000600718 CSDC2Q9Y534 153 aaKnown RBP12.3□□□□□ -0.44
SHKBP1-224ENST00000600718 H3BNG1 76 aa12.29□□□□□ -0.44
SHKBP1-224ENST00000600718 UBE2L6O14933 153 aa12.29□□□□□ -0.44
SHKBP1-224ENST00000600718 ZC2HC1BQ5TFG8 222 aa12.29□□□□□ -0.44
SHKBP1-224ENST00000600718 DGAT2L7PQ6IED9 249 aa12.29□□□□□ -0.44
SHKBP1-224ENST00000600718 AMELXQ99217 191 aa12.29□□□□□ -0.44
SHKBP1-224ENST00000600718 ICOSQ9Y6W8 199 aa12.29□□□□□ -0.44
SHKBP1-224ENST00000600718 NANOS2P60321 138 aaKnown RBP12.29□□□□□ -0.44
SHKBP1-224ENST00000600718 NOTCH1P46531 2555 aa12.28□□□□□ -0.44
SHKBP1-224ENST00000600718 B9D2Q9BPU9 175 aa12.28□□□□□ -0.44
SHKBP1-224ENST00000600718 MGAM2Q2M2H8 2515 aa12.27□□□□□ -0.45
SHKBP1-224ENST00000600718 A0A096LPF7 62 aa12.27□□□□□ -0.45
SHKBP1-224ENST00000600718 SCGB1A1P11684 91 aa12.27□□□□□ -0.45
SHKBP1-224ENST00000600718 CHCHD5Q9BSY4 110 aa12.26□□□□□ -0.45
SHKBP1-224ENST00000600718 IGLV4-69A0A075B6H9 119 aa12.25□□□□□ -0.45
SHKBP1-224ENST00000600718 TCTAP57738 103 aa12.25□□□□□ -0.45
SHKBP1-224ENST00000600718 Q6ZUT4 128 aa12.25□□□□□ -0.45
SHKBP1-224ENST00000600718 TMEM101Q96IK0 257 aa12.25□□□□□ -0.45
SHKBP1-224ENST00000600718 CHAC1Q9BUX1 264 aa12.25□□□□□ -0.45
SHKBP1-224ENST00000600718 NBEAL1Q6ZS30 2694 aa12.24□□□□□ -0.45
SHKBP1-224ENST00000600718 DEFB131BA0A096LNP1 70 aa12.24□□□□□ -0.45
SHKBP1-224ENST00000600718 GCSHP23434 173 aa12.24□□□□□ -0.45
SHKBP1-224ENST00000600718 FXYD2P54710 66 aa12.24□□□□□ -0.45
SHKBP1-224ENST00000600718 GAGE6Q13070 117 aa12.24□□□□□ -0.45
SHKBP1-224ENST00000600718 TM2D2Q9BX73 214 aa12.24□□□□□ -0.45
SHKBP1-224ENST00000600718 NFE4Q86UQ8 179 aa12.23□□□□□ -0.45
SHKBP1-224ENST00000600718 C11orf86A6NJI1 115 aa12.23□□□□□ -0.45
SHKBP1-224ENST00000600718 RNASE13Q5GAN3 156 aaKnown RBP12.23□□□□□ -0.45
SHKBP1-224ENST00000600718 CDC42SE2Q9NRR3 84 aa12.23□□□□□ -0.45
SHKBP1-224ENST00000600718 IGKV2D-26A0A0A0MRZ7 120 aa12.22□□□□□ -0.45
SHKBP1-224ENST00000600718 CEND1Q8N111 149 aa12.22□□□□□ -0.45
SHKBP1-224ENST00000600718 RPL24P83731 157 aaKnown RBP12.21□□□□□ -0.45
SHKBP1-224ENST00000600718 TAL2Q16559 108 aa12.21□□□□□ -0.45
SHKBP1-224ENST00000600718 TRAV10A0A0B4J240 114 aa12.21□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms