RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 EBI3Q14213 229 aa7.09□□□□□ -1.27
CCDC40-212ENST00000574799 ZNF462Q96JM2 2506 aa7.09□□□□□ -1.28
CCDC40-212ENST00000574799 KMT2BQ9UMN6 2715 aaPredicted RBP7.09□□□□□ -1.28
CCDC40-212ENST00000574799 SAA4P35542 130 aa7.09□□□□□ -1.28
CCDC40-212ENST00000574799 HRCT1Q6UXD1 115 aa7.09□□□□□ -1.28
CCDC40-212ENST00000574799 TOMM7Q9P0U1 55 aa7.09□□□□□ -1.28
CCDC40-212ENST00000574799 COX7A2LO14548 114 aa7.08□□□□□ -1.28
CCDC40-212ENST00000574799 TRBV12-3P01733 135 aa7.08□□□□□ -1.28
CCDC40-212ENST00000574799 RNF152Q8N8N0 203 aa7.08□□□□□ -1.28
CCDC40-212ENST00000574799 TEX15Q9BXT5 2789 aa7.08□□□□□ -1.28
CCDC40-212ENST00000574799 TINCRA0A1B0GVN0 87 aa7.08□□□□□ -1.28
CCDC40-212ENST00000574799 F5H768 121 aa7.08□□□□□ -1.28
CCDC40-212ENST00000574799 M0QY20 66 aa7.08□□□□□ -1.28
CCDC40-212ENST00000574799 CRPP02741 224 aa7.08□□□□□ -1.28
CCDC40-212ENST00000574799 TIRAPP58753 221 aa7.08□□□□□ -1.28
CCDC40-212ENST00000574799 IGKV3OR2-268A0A0C4DH90 116 aa7.07□□□□□ -1.28
CCDC40-212ENST00000574799 A0A0J9YX75 114 aa7.07□□□□□ -1.28
CCDC40-212ENST00000574799 SNRPD3P62318 126 aaKnown RBP7.07□□□□□ -1.28
CCDC40-212ENST00000574799 POM121L12Q8N7R1 296 aa7.07□□□□□ -1.28
CCDC40-212ENST00000574799 VSIG2Q96IQ7 327 aa7.07□□□□□ -1.28
CCDC40-212ENST00000574799 BPESC1Q9GZL8 116 aa7.07□□□□□ -1.28
CCDC40-212ENST00000574799 SETD2Q9BYW2 2564 aaPredicted RBP7.07□□□□□ -1.28
CCDC40-212ENST00000574799 SPANXCQ9NY87 97 aa7.07□□□□□ -1.28
CCDC40-212ENST00000574799 C14orf132Q9NPU4 83 aa7.07□□□□□ -1.28
CCDC40-212ENST00000574799 NIPBLQ6KC79 2804 aaeCLIP7.07□□□□□ -1.28
CCDC40-212ENST00000574799 KLK9Q2XQG4 91 aa7.06□□□□□ -1.28
CCDC40-212ENST00000574799 C19orf54Q5BKX5 351 aa7.06□□□□□ -1.28
CCDC40-212ENST00000574799 IGHV1OR15-1A0A075B7D0 117 aa7.06□□□□□ -1.28
CCDC40-212ENST00000574799 KIR2DL5BQ8NHK3 375 aa7.06□□□□□ -1.28
CCDC40-212ENST00000574799 CR1P17927 2039 aa7.06□□□□□ -1.28
CCDC40-212ENST00000574799 SMCR5Q8TEV8 140 aa7.06□□□□□ -1.28
CCDC40-212ENST00000574799 CDKN2A-AS1Q9UH64 79 aa7.06□□□□□ -1.28
CCDC40-212ENST00000574799 A0A087WVE0 104 aa7.05□□□□□ -1.28
CCDC40-212ENST00000574799 NDUFA4O00483 81 aa7.05□□□□□ -1.28
CCDC40-212ENST00000574799 LINC00315P59091 139 aa7.05□□□□□ -1.28
CCDC40-212ENST00000574799 KIF25-AS1Q9Y6Z4 181 aa7.05□□□□□ -1.28
CCDC40-212ENST00000574799 TRBV6-5A0A0K0K1A5 114 aa7.05□□□□□ -1.28
CCDC40-212ENST00000574799 C1orf43Q9BWL3 253 aa7.05□□□□□ -1.28
CCDC40-212ENST00000574799 IGHV3-16A0A0C4DH30 117 aa7.05□□□□□ -1.28
CCDC40-212ENST00000574799 RPL18AQ02543 176 aaKnown RBP7.05□□□□□ -1.28
CCDC40-212ENST00000574799 LINC00308Q8TCZ7 52 aa7.05□□□□□ -1.28
CCDC40-212ENST00000574799 C10orf105Q8TEF2 133 aa7.05□□□□□ -1.28
CCDC40-212ENST00000574799 TRAV25A0A0B4J276 109 aa7.04□□□□□ -1.28
CCDC40-212ENST00000574799 FAM223BA6NKX1 122 aa7.04□□□□□ -1.28
CCDC40-212ENST00000574799 PRB1P04280 392 aa7.04□□□□□ -1.28
CCDC40-212ENST00000574799 TMEM258P61165 79 aa7.04□□□□□ -1.28
CCDC40-212ENST00000574799 FAM223AQ8IWN6 122 aa7.04□□□□□ -1.28
CCDC40-212ENST00000574799 MYO9AB2RTY4 2548 aa7.04□□□□□ -1.28
CCDC40-212ENST00000574799 MALP21145 153 aa7.04□□□□□ -1.28
CCDC40-212ENST00000574799 LRRK2Q5S007 2527 aa7.04□□□□□ -1.28
CCDC40-212ENST00000574799 A0A096LNT2 108 aa7.03□□□□□ -1.28
CCDC40-212ENST00000574799 SOCS3O14543 225 aa7.03□□□□□ -1.28
CCDC40-212ENST00000574799 CXCL5P42830 114 aa7.03□□□□□ -1.28
CCDC40-212ENST00000574799 SERP2Q8N6R1 65 aa7.03□□□□□ -1.28
CCDC40-212ENST00000574799 NF1P21359 2839 aa7.03□□□□□ -1.28
CCDC40-212ENST00000574799 PROK1P58294 105 aa7.03□□□□□ -1.28
CCDC40-212ENST00000574799 LINC00158P58513 81 aa7.03□□□□□ -1.28
CCDC40-212ENST00000574799 MOB4Q9Y3A3 225 aa7.03□□□□□ -1.28
CCDC40-212ENST00000574799 MUC4Q99102 2169 aa7.03□□□□□ -1.28
CCDC40-212ENST00000574799 POLQO75417 2590 aa7.03□□□□□ -1.28
CCDC40-212ENST00000574799 IGHV4-61A0A0C4DH41 118 aa7.03□□□□□ -1.28
CCDC40-212ENST00000574799 MRPS36P82909 103 aaKnown RBP7.03□□□□□ -1.28
CCDC40-212ENST00000574799 C4orf26Q17RF5 130 aa7.03□□□□□ -1.28
CCDC40-212ENST00000574799 BRD3OSQ6XYD6 125 aa7.03□□□□□ -1.28
CCDC40-212ENST00000574799 IGHV3OR16-12A0A075B7B8 117 aa7.02□□□□□ -1.29
CCDC40-212ENST00000574799 U3KQE9 123 aa7.02□□□□□ -1.29
CCDC40-212ENST00000574799 USP17L23D6RBM5 183 aa7.02□□□□□ -1.29
CCDC40-212ENST00000574799 LITAFQ99732 161 aa7.02□□□□□ -1.29
CCDC40-212ENST00000574799 TMEM243Q9BU79 118 aa7.02□□□□□ -1.29
CCDC40-212ENST00000574799 ANKRD17O75179 2603 aaKnown RBP7.02□□□□□ -1.29
CCDC40-212ENST00000574799 CRYGAP11844 174 aa7.02□□□□□ -1.29
CCDC40-212ENST00000574799 PIK3CD-AS1Q5SR53 167 aa7.02□□□□□ -1.29
CCDC40-212ENST00000574799 PAX4O43316 350 aa7.01□□□□□ -1.29
CCDC40-212ENST00000574799 AVPP01185 164 aa7.01□□□□□ -1.29
CCDC40-212ENST00000574799 DEFB121Q5J5C9 76 aa7.01□□□□□ -1.29
CCDC40-212ENST00000574799 DCANP1Q8TF63 244 aa7.01□□□□□ -1.29
CCDC40-212ENST00000574799 TRAV23DV6A0A075B6W5 121 aa7□□□□□ -1.29
CCDC40-212ENST00000574799 RBMY1BA6NDE4 496 aaKnown RBP7□□□□□ -1.29
CCDC40-212ENST00000574799 RBMY1EA6NEQ0 496 aaKnown RBP7□□□□□ -1.29
CCDC40-212ENST00000574799 RBMY1DP0C7P1 496 aaKnown RBP7□□□□□ -1.29
CCDC40-212ENST00000574799 RBMY1A1P0DJD3 496 aaKnown RBP7□□□□□ -1.29
CCDC40-212ENST00000574799 RBMY1CP0DJD4 496 aa7□□□□□ -1.29
CCDC40-212ENST00000574799 RBMY1FQ15415 496 aaKnown RBP7□□□□□ -1.29
CCDC40-212ENST00000574799 KHDC1LQ5JSQ8 128 aa7□□□□□ -1.29
CCDC40-212ENST00000574799 C20orf197Q8N268 126 aa7□□□□□ -1.29
CCDC40-212ENST00000574799 Q8N2B8 174 aa7□□□□□ -1.29
CCDC40-212ENST00000574799 CHD6Q8TD26 2715 aa7□□□□□ -1.29
CCDC40-212ENST00000574799 DPH3Q96FX2 82 aa7□□□□□ -1.29
CCDC40-212ENST00000574799 IGHV4-30-2A0A087WSY4 118 aa7□□□□□ -1.29
CCDC40-212ENST00000574799 TRAV13-2A0A0B4J235 113 aa7□□□□□ -1.29
CCDC40-212ENST00000574799 KLLNB2CW77 178 aa7□□□□□ -1.29
CCDC40-212ENST00000574799 GHRHP01286 108 aa7□□□□□ -1.29
CCDC40-212ENST00000574799 JMJD1CQ15652 2540 aa7□□□□□ -1.29
CCDC40-212ENST00000574799 CITED2Q99967 270 aaPredicted RBP6.99□□□□□ -1.29
CCDC40-212ENST00000574799 USP9YO00507 2555 aaPredicted RBP6.99□□□□□ -1.29
CCDC40-212ENST00000574799 LECT2O14960 151 aa6.99□□□□□ -1.29
CCDC40-212ENST00000574799 RPS28P62857 69 aaKnown RBP6.99□□□□□ -1.29
CCDC40-212ENST00000574799 USMG5Q96IX5 58 aa6.99□□□□□ -1.29
CCDC40-212ENST00000574799 LINC00467Q9BRT7 94 aa6.99□□□□□ -1.29
CCDC40-212ENST00000574799 UBE2L6O14933 153 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 101.5 ms