RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 BAGE2Q86Y30 109 aa-1.37□□□□□ -2.63
VPS13C-205ENST00000558088 TTC9CQ8N5M4 171 aa-1.37□□□□□ -2.63
VPS13C-205ENST00000558088 DEFB123Q8N688 67 aa-1.37□□□□□ -2.63
VPS13C-205ENST00000558088 LINC00472Q9H8W2 130 aa-1.37□□□□□ -2.63
VPS13C-205ENST00000558088 MRPL40Q9NQ50 206 aaKnown RBP-1.37□□□□□ -2.63
VPS13C-205ENST00000558088 MRC1P22897 1456 aa-1.37□□□□□ -2.63
VPS13C-205ENST00000558088 TSTD3H0UI37 97 aa-1.38□□□□□ -2.63
VPS13C-205ENST00000558088 NDUFB6O95139 128 aa-1.38□□□□□ -2.63
VPS13C-205ENST00000558088 APOC3P02656 99 aa-1.38□□□□□ -2.63
VPS13C-205ENST00000558088 V9GYQ6 96 aa-1.38□□□□□ -2.63
VPS13C-205ENST00000558088 ZCCHC11Q5TAX3 1644 aaKnown RBP-1.38□□□□□ -2.63
VPS13C-205ENST00000558088 CASKIN1Q8WXD9 1431 aa-1.39□□□□□ -2.63
VPS13C-205ENST00000558088 ACACAQ13085 2346 aa-1.39□□□□□ -2.63
VPS13C-205ENST00000558088 LRRC37A3O60309 1634 aa-1.39□□□□□ -2.63
VPS13C-205ENST00000558088 CPSF4LA6NMK7 179 aaKnown RBP-1.39□□□□□ -2.63
VPS13C-205ENST00000558088 HCG22E2RYF7 251 aa-1.39□□□□□ -2.63
VPS13C-205ENST00000558088 NCR2O95944 276 aa-1.39□□□□□ -2.63
VPS13C-205ENST00000558088 IFNGP01579 166 aa-1.39□□□□□ -2.63
VPS13C-205ENST00000558088 HIST1H1AQ02539 215 aaPredicted RBP-1.39□□□□□ -2.63
VPS13C-205ENST00000558088 CCDC153Q494R4 210 aa-1.39□□□□□ -2.63
VPS13C-205ENST00000558088 Q6ZUT4 128 aa-1.39□□□□□ -2.63
VPS13C-205ENST00000558088 FDCSPQ8NFU4 85 aa-1.39□□□□□ -2.63
VPS13C-205ENST00000558088 HSPB11Q9Y547 144 aa-1.39□□□□□ -2.63
VPS13C-205ENST00000558088 DAPK1P53355 1430 aa-1.4□□□□□ -2.63
VPS13C-205ENST00000558088 LRRC37A2A6NM11 1700 aa-1.4□□□□□ -2.63
VPS13C-205ENST00000558088 A0A1B0GX51 115 aa-1.4□□□□□ -2.63
VPS13C-205ENST00000558088 F8VRH5 84 aa-1.4□□□□□ -2.63
VPS13C-205ENST00000558088 J3QR89 54 aa-1.4□□□□□ -2.63
VPS13C-205ENST00000558088 UQCR11O14957 56 aa-1.4□□□□□ -2.63
VPS13C-205ENST00000558088 SIX6O95475 246 aa-1.4□□□□□ -2.63
VPS13C-205ENST00000558088 ZNF236Q9UL36 1845 aa-1.4□□□□□ -2.63
VPS13C-205ENST00000558088 DNAH2Q9P225 4427 aa-1.41□□□□□ -2.63
VPS13C-205ENST00000558088 GAPVD1Q14C86 1478 aa-1.41□□□□□ -2.63
VPS13C-205ENST00000558088 TRAV13-2A0A0B4J235 113 aa-1.41□□□□□ -2.64
VPS13C-205ENST00000558088 ARPC5O15511 151 aa-1.41□□□□□ -2.64
VPS13C-205ENST00000558088 DBIP07108 87 aaKnown RBP-1.41□□□□□ -2.64
VPS13C-205ENST00000558088 FABP1P07148 127 aa-1.41□□□□□ -2.64
VPS13C-205ENST00000558088 IGLC6P0CF74 106 aa-1.41□□□□□ -2.64
VPS13C-205ENST00000558088 PLECQ15149 4684 aaKnown RBP-1.41□□□□□ -2.64
VPS13C-205ENST00000558088 NSD3Q9BZ95 1437 aa-1.41□□□□□ -2.64
VPS13C-205ENST00000558088 HTTP42858 3142 aa-1.42□□□□□ -2.64
VPS13C-205ENST00000558088 TRBV7-4A0A0J9YYF1 115 aa-1.42□□□□□ -2.64
VPS13C-205ENST00000558088 TPPP2P59282 170 aa-1.42□□□□□ -2.64
VPS13C-205ENST00000558088 Q6AWC8 147 aa-1.42□□□□□ -2.64
VPS13C-205ENST00000558088 SCIMPQ6UWF3 145 aa-1.42□□□□□ -2.64
VPS13C-205ENST00000558088 USMG5Q96IX5 58 aa-1.42□□□□□ -2.64
VPS13C-205ENST00000558088 GINS2Q9Y248 185 aa-1.42□□□□□ -2.64
VPS13C-205ENST00000558088 LENEPQ9Y5L5 61 aa-1.42□□□□□ -2.64
VPS13C-205ENST00000558088 VPS13DQ5THJ4 4388 aa-1.43□□□□□ -2.64
VPS13C-205ENST00000558088 NBASA2RRP1 2371 aa-1.43□□□□□ -2.64
VPS13C-205ENST00000558088 DOCK1Q14185 1865 aa-1.43□□□□□ -2.64
VPS13C-205ENST00000558088 PIGBOS1A0A0B4J2F0 54 aa-1.43□□□□□ -2.64
VPS13C-205ENST00000558088 K7ERU9 68 aa-1.43□□□□□ -2.64
VPS13C-205ENST00000558088 SMIM3Q9BZL3 60 aa-1.43□□□□□ -2.64
VPS13C-205ENST00000558088 CENPHQ9H3R5 247 aa-1.43□□□□□ -2.64
VPS13C-205ENST00000558088 SPANXCQ9NY87 97 aa-1.43□□□□□ -2.64
VPS13C-205ENST00000558088 MYH8P13535 1937 aa-1.43□□□□□ -2.64
VPS13C-205ENST00000558088 WDR87Q6ZQQ6 2873 aa-1.44□□□□□ -2.64
VPS13C-205ENST00000558088 MYH13Q9UKX3 1938 aa-1.44□□□□□ -2.64
VPS13C-205ENST00000558088 NEFHP12036 1026 aa-1.44□□□□□ -2.64
VPS13C-205ENST00000558088 S100A5P33763 92 aa-1.44□□□□□ -2.64
VPS13C-205ENST00000558088 UBA52P62987 128 aaKnown RBP-1.44□□□□□ -2.64
VPS13C-205ENST00000558088 SMIM15Q7Z3B0 74 aa-1.44□□□□□ -2.64
VPS13C-205ENST00000558088 KCNRGQ8N5I3 272 aa-1.44□□□□□ -2.64
VPS13C-205ENST00000558088 AMELXQ99217 191 aa-1.44□□□□□ -2.64
VPS13C-205ENST00000558088 KNL1Q8NG31 2342 aa-1.44□□□□□ -2.64
VPS13C-205ENST00000558088 TEX15Q9BXT5 2789 aa-1.44□□□□□ -2.64
VPS13C-205ENST00000558088 XIRP1Q702N8 1843 aaKnown RBP-1.45□□□□□ -2.64
VPS13C-205ENST00000558088 IGLC7A0M8Q6 106 aa-1.45□□□□□ -2.64
VPS13C-205ENST00000558088 H0YGG7 62 aa-1.45□□□□□ -2.64
VPS13C-205ENST00000558088 M0R2Z0 102 aa-1.45□□□□□ -2.64
VPS13C-205ENST00000558088 LINC00694P0DN24 101 aa-1.45□□□□□ -2.64
VPS13C-205ENST00000558088 SMPXQ9UHP9 88 aa-1.45□□□□□ -2.64
VPS13C-205ENST00000558088 AKAP9Q99996 3911 aa-1.46□□□□□ -2.64
VPS13C-205ENST00000558088 TMEM2Q9UHN6 1383 aa-1.46□□□□□ -2.64
VPS13C-205ENST00000558088 PRDM2Q13029 1718 aa-1.46□□□□□ -2.64
VPS13C-205ENST00000558088 RNF213Q63HN8 5207 aa-1.46□□□□□ -2.64
VPS13C-205ENST00000558088 SPRR2FQ96RM1 72 aa-1.46□□□□□ -2.64
VPS13C-205ENST00000558088 AIF1LQ9BQI0 150 aa-1.46□□□□□ -2.64
VPS13C-205ENST00000558088 NAA60Q9H7X0 242 aa-1.46□□□□□ -2.64
VPS13C-205ENST00000558088 SHANK2Q9UPX8 1470 aa-1.46□□□□□ -2.64
VPS13C-205ENST00000558088 ANKRD11Q6UB99 2663 aaPredicted RBP-1.46□□□□□ -2.64
VPS13C-205ENST00000558088 LAMA1P25391 3075 aa-1.46□□□□□ -2.64
VPS13C-205ENST00000558088 KDM5AP29375 1690 aaKnown RBP-1.47□□□□□ -2.64
VPS13C-205ENST00000558088 LINC00959A0A1B0GUT2 108 aa-1.47□□□□□ -2.64
VPS13C-205ENST00000558088 H1FX-AS1Q4G0G2 97 aa-1.47□□□□□ -2.64
VPS13C-205ENST00000558088 C9orf62Q8N4C0 152 aa-1.47□□□□□ -2.64
VPS13C-205ENST00000558088 NDUFA4L2Q9NRX3 87 aa-1.47□□□□□ -2.64
VPS13C-205ENST00000558088 LINC01558Q9Y6Z2 57 aa-1.47□□□□□ -2.64
VPS13C-205ENST00000558088 ARHGEF12Q9NZN5 1544 aa-1.47□□□□□ -2.64
VPS13C-205ENST00000558088 FAT3Q8TDW7 4589 aa-1.48□□□□□ -2.65
VPS13C-205ENST00000558088 IFT140Q96RY7 1462 aa-1.48□□□□□ -2.65
VPS13C-205ENST00000558088 HMGXB3Q12766 1538 aa-1.48□□□□□ -2.65
VPS13C-205ENST00000558088 SFT2D2O95562 160 aa-1.48□□□□□ -2.65
VPS13C-205ENST00000558088 DDA1Q9BW61 102 aa-1.48□□□□□ -2.65
VPS13C-205ENST00000558088 DYNLRB1Q9NP97 96 aa-1.48□□□□□ -2.65
VPS13C-205ENST00000558088 FAIMQ9NVQ4 179 aa-1.48□□□□□ -2.65
VPS13C-205ENST00000558088 PKD1L2Q7Z442 2459 aa-1.49□□□□□ -2.65
VPS13C-205ENST00000558088 SPAARA0A1B0GVQ0 90 aa-1.49□□□□□ -2.65
VPS13C-205ENST00000558088 C10orf113Q5VZT2 155 aa-1.49□□□□□ -2.65
Retrieved 100 of 20,778 RNA–protein pairs in 102.9 ms