RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 K7EP34 96 aa7.95□□□□□ -1.14
SHMT2-216ENST00000554975 CCL25O15444 150 aa7.95□□□□□ -1.14
SHMT2-216ENST00000554975 CIDEAO60543 219 aa7.95□□□□□ -1.14
SHMT2-216ENST00000554975 TSHBP01222 138 aa7.95□□□□□ -1.14
SHMT2-216ENST00000554975 RBMY1A1P0DJD3 496 aaKnown RBP7.95□□□□□ -1.14
SHMT2-216ENST00000554975 RBMY1CP0DJD4 496 aa7.95□□□□□ -1.14
SHMT2-216ENST00000554975 FABP2P12104 132 aa7.95□□□□□ -1.14
SHMT2-216ENST00000554975 TCTAP57738 103 aa7.95□□□□□ -1.14
SHMT2-216ENST00000554975 RBMY1FQ15415 496 aaKnown RBP7.95□□□□□ -1.14
SHMT2-216ENST00000554975 MORN3Q6PF18 240 aaPredicted RBP7.95□□□□□ -1.14
SHMT2-216ENST00000554975 SCGB1D4Q6XE38 83 aa7.95□□□□□ -1.14
SHMT2-216ENST00000554975 NEGR1Q7Z3B1 354 aa7.95□□□□□ -1.14
SHMT2-216ENST00000554975 CST9LQ9H4G1 147 aa7.95□□□□□ -1.14
SHMT2-216ENST00000554975 IGLV4-69A0A075B6H9 119 aa7.94□□□□□ -1.14
SHMT2-216ENST00000554975 K7EP13 123 aa7.94□□□□□ -1.14
SHMT2-216ENST00000554975 RS1O15537 224 aa7.94□□□□□ -1.14
SHMT2-216ENST00000554975 IGHV3-53P01767 116 aa7.94□□□□□ -1.14
SHMT2-216ENST00000554975 RPL35AP18077 110 aaKnown RBP7.94□□□□□ -1.14
SHMT2-216ENST00000554975 ODF3L2Q3SX64 289 aa7.94□□□□□ -1.14
SHMT2-216ENST00000554975 PLEKHB2Q96CS7 222 aa7.94□□□□□ -1.14
SHMT2-216ENST00000554975 KLK5Q9Y337 293 aaPredicted RBP7.94□□□□□ -1.14
SHMT2-216ENST00000554975 A0A1W2PPM0 123 aa7.93□□□□□ -1.14
SHMT2-216ENST00000554975 FXYD2P54710 66 aa7.93□□□□□ -1.14
SHMT2-216ENST00000554975 APOC4P55056 127 aa7.93□□□□□ -1.14
SHMT2-216ENST00000554975 AMMECR1LQ6DCA0 310 aa7.93□□□□□ -1.14
SHMT2-216ENST00000554975 C11orf72Q8NBR9 251 aa7.93□□□□□ -1.14
SHMT2-216ENST00000554975 TMEM263Q8WUH6 116 aaKnown RBP7.93□□□□□ -1.14
SHMT2-216ENST00000554975 SPANXB1Q9NS25 103 aaPredicted RBP7.93□□□□□ -1.14
SHMT2-216ENST00000554975 TRBV7-3A0A075B6L6 115 aa7.92□□□□□ -1.14
SHMT2-216ENST00000554975 TRBV10-1A0A0K0K1A3 114 aa7.92□□□□□ -1.14
SHMT2-216ENST00000554975 H3BUT2 72 aa7.92□□□□□ -1.14
SHMT2-216ENST00000554975 LGALS3P17931 250 aaKnown RBP7.92□□□□□ -1.14
SHMT2-216ENST00000554975 RPL39P62891 51 aaKnown RBP7.92□□□□□ -1.14
SHMT2-216ENST00000554975 COTL1Q14019 142 aa7.92□□□□□ -1.14
SHMT2-216ENST00000554975 TMEM170BQ5T4T1 132 aa7.92□□□□□ -1.14
SHMT2-216ENST00000554975 CFAP126Q5VTH2 177 aa7.92□□□□□ -1.14
SHMT2-216ENST00000554975 UFSP1Q6NVU6 142 aa7.92□□□□□ -1.14
SHMT2-216ENST00000554975 Q6ZVH6 145 aa7.92□□□□□ -1.14
SHMT2-216ENST00000554975 VCX2Q9H322 139 aa7.92□□□□□ -1.14
SHMT2-216ENST00000554975 NHP2Q9NX24 153 aaKnown RBP7.92□□□□□ -1.14
SHMT2-216ENST00000554975 SPCS1Q9Y6A9 102 aa7.92□□□□□ -1.14
SHMT2-216ENST00000554975 HERC1Q15751 4861 aa7.91□□□□□ -1.14
SHMT2-216ENST00000554975 IGLV4-3A0A075B6K6 122 aa7.91□□□□□ -1.14
SHMT2-216ENST00000554975 A0A1B0GWB2 263 aa7.91□□□□□ -1.14
SHMT2-216ENST00000554975 LEPROTO15243 131 aa7.91□□□□□ -1.14
SHMT2-216ENST00000554975 HTN1P15515 57 aa7.91□□□□□ -1.14
SHMT2-216ENST00000554975 DEFB135Q30KP9 77 aa7.91□□□□□ -1.14
SHMT2-216ENST00000554975 PHLDA1Q8WV24 401 aaPredicted RBP7.91□□□□□ -1.14
SHMT2-216ENST00000554975 C16orf74Q96GX8 76 aa7.91□□□□□ -1.14
SHMT2-216ENST00000554975 TIMM21Q9BVV7 248 aa7.91□□□□□ -1.14
SHMT2-216ENST00000554975 TRAV4A0A0B4J268 109 aa7.9□□□□□ -1.14
SHMT2-216ENST00000554975 K7ERU9 68 aa7.9□□□□□ -1.14
SHMT2-216ENST00000554975 TTTY13Q9BZ97 58 aa7.9□□□□□ -1.14
SHMT2-216ENST00000554975 CBY1Q9Y3M2 126 aa7.9□□□□□ -1.14
SHMT2-216ENST00000554975 TMEM238C9JI98 176 aa7.89□□□□□ -1.15
SHMT2-216ENST00000554975 J3QQQ9 107 aa7.89□□□□□ -1.15
SHMT2-216ENST00000554975 MRPS36P82909 103 aaKnown RBP7.89□□□□□ -1.15
SHMT2-216ENST00000554975 RPL36AP83881 106 aaKnown RBP7.89□□□□□ -1.15
SHMT2-216ENST00000554975 SRSF9Q13242 221 aaKnown RBP eCLIP7.89□□□□□ -1.15
SHMT2-216ENST00000554975 MAPKAPK5-AS1Q8N8E1 139 aa7.89□□□□□ -1.15
SHMT2-216ENST00000554975 RPL36ALQ969Q0 106 aaKnown RBP7.89□□□□□ -1.15
SHMT2-216ENST00000554975 RAB37Q96AX2 223 aa7.89□□□□□ -1.15
SHMT2-216ENST00000554975 ZNF479Q96JC4 524 aa7.89□□□□□ -1.15
SHMT2-216ENST00000554975 AMELXQ99217 191 aa7.89□□□□□ -1.15
SHMT2-216ENST00000554975 MRPL16Q9NX20 251 aaKnown RBP7.89□□□□□ -1.15
SHMT2-216ENST00000554975 XCL2Q9UBD3 114 aa7.89□□□□□ -1.15
SHMT2-216ENST00000554975 TMEM223A0PJW6 202 aa7.88□□□□□ -1.15
SHMT2-216ENST00000554975 K7EQD1 137 aa7.88□□□□□ -1.15
SHMT2-216ENST00000554975 P0DMU3 169 aa7.88□□□□□ -1.15
SHMT2-216ENST00000554975 FAM231AP0DMU4 169 aa7.88□□□□□ -1.15
SHMT2-216ENST00000554975 FAM231CP0DMU5 169 aa7.88□□□□□ -1.15
SHMT2-216ENST00000554975 ZNF22P17026 224 aaPredicted RBP7.88□□□□□ -1.15
SHMT2-216ENST00000554975 KIR2DL5BQ8NHK3 375 aa7.88□□□□□ -1.15
SHMT2-216ENST00000554975 RNASE8Q8TDE3 154 aaKnown RBP7.88□□□□□ -1.15
SHMT2-216ENST00000554975 AZU1P20160 251 aa7.87□□□□□ -1.15
SHMT2-216ENST00000554975 DAZ2Q13117 558 aaKnown RBP7.87□□□□□ -1.15
SHMT2-216ENST00000554975 RRN3P1Q2M238 152 aa7.87□□□□□ -1.15
SHMT2-216ENST00000554975 C12orf74Q32Q52 190 aa7.87□□□□□ -1.15
SHMT2-216ENST00000554975 DAZ4Q86SG3 579 aaKnown RBP7.87□□□□□ -1.15
SHMT2-216ENST00000554975 C1orf158Q8N1D5 194 aa7.87□□□□□ -1.15
SHMT2-216ENST00000554975 DAZ3Q9NR90 486 aaKnown RBP7.87□□□□□ -1.15
SHMT2-216ENST00000554975 TRGV1A0A0A0MS02 117 aa7.86□□□□□ -1.15
SHMT2-216ENST00000554975 A0A0J9YY99 117 aa7.86□□□□□ -1.15
SHMT2-216ENST00000554975 TINCRA0A1B0GVN0 87 aa7.86□□□□□ -1.15
SHMT2-216ENST00000554975 GAGE12BA1L429 117 aa7.86□□□□□ -1.15
SHMT2-216ENST00000554975 LINC00336Q6ZUF6 198 aa7.86□□□□□ -1.15
SHMT2-216ENST00000554975 RNF183Q96D59 192 aa7.86□□□□□ -1.15
SHMT2-216ENST00000554975 IGHV3-73A0A0B4J1V6 119 aa7.85□□□□□ -1.15
SHMT2-216ENST00000554975 IGLL5B9A064 214 aa7.85□□□□□ -1.15
SHMT2-216ENST00000554975 UBE2D1P51668 147 aa7.85□□□□□ -1.15
SHMT2-216ENST00000554975 NANOS2P60321 138 aaKnown RBP7.85□□□□□ -1.15
SHMT2-216ENST00000554975 DGAT2L7PQ6IED9 249 aa7.85□□□□□ -1.15
SHMT2-216ENST00000554975 ZNRF2Q8NHG8 242 aa7.85□□□□□ -1.15
SHMT2-216ENST00000554975 CHCHD7Q9BUK0 85 aa7.85□□□□□ -1.15
SHMT2-216ENST00000554975 UBE2D4Q9Y2X8 147 aa7.85□□□□□ -1.15
SHMT2-216ENST00000554975 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.84□□□□□ -1.15
SHMT2-216ENST00000554975 H7C423 109 aa7.84□□□□□ -1.15
SHMT2-216ENST00000554975 RTL8CO15255 209 aa7.84□□□□□ -1.15
SHMT2-216ENST00000554975 EMP1P54849 157 aa7.84□□□□□ -1.15
SHMT2-216ENST00000554975 RPL24P83731 157 aaKnown RBP7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms