RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 C16orf74Q96GX8 76 aa13.22□□□□□ -0.29
PRPF40B-208ENST00000548436 LY6G6DO95868 133 aa13.22□□□□□ -0.29
PRPF40B-208ENST00000548436 SPINK8P0C7L1 97 aa13.22□□□□□ -0.29
PRPF40B-208ENST00000548436 LINC00694P0DN24 101 aa13.22□□□□□ -0.29
PRPF40B-208ENST00000548436 NTM-AS1Q6ZSK4 140 aa13.22□□□□□ -0.29
PRPF40B-208ENST00000548436 A8MZ25 164 aa13.21□□□□□ -0.29
PRPF40B-208ENST00000548436 WFDC2Q14508 124 aa13.21□□□□□ -0.29
PRPF40B-208ENST00000548436 SFTA2Q6UW10 78 aa13.21□□□□□ -0.29
PRPF40B-208ENST00000548436 VSIG2Q96IQ7 327 aa13.21□□□□□ -0.29
PRPF40B-208ENST00000548436 VPS25Q9BRG1 176 aa13.21□□□□□ -0.29
PRPF40B-208ENST00000548436 F8W1H4 67 aa13.2□□□□□ -0.3
PRPF40B-208ENST00000548436 UBE2D3P61077 147 aa13.2□□□□□ -0.3
PRPF40B-208ENST00000548436 UBE2D2P62837 147 aa13.2□□□□□ -0.3
PRPF40B-208ENST00000548436 A4D1N5 150 aa13.2□□□□□ -0.3
PRPF40B-208ENST00000548436 GAGE12JA6NER3 117 aa13.2□□□□□ -0.3
PRPF40B-208ENST00000548436 G3V4G9 280 aa13.2□□□□□ -0.3
PRPF40B-208ENST00000548436 GAGE7O76087 117 aa13.2□□□□□ -0.3
PRPF40B-208ENST00000548436 GAGE12FP0CL80 117 aa13.2□□□□□ -0.3
PRPF40B-208ENST00000548436 GAGE12GP0CL81 117 aa13.2□□□□□ -0.3
PRPF40B-208ENST00000548436 GAGE12IP0CL82 117 aa13.2□□□□□ -0.3
PRPF40B-208ENST00000548436 GAGE4Q13068 117 aa13.2□□□□□ -0.3
PRPF40B-208ENST00000548436 GAGE5Q13069 117 aa13.2□□□□□ -0.3
PRPF40B-208ENST00000548436 GAGE13Q4V321 117 aa13.2□□□□□ -0.3
PRPF40B-208ENST00000548436 DGAT2L7PQ6IED9 249 aa13.2□□□□□ -0.3
PRPF40B-208ENST00000548436 C1QTNF4Q9BXJ3 329 aa13.2□□□□□ -0.3
PRPF40B-208ENST00000548436 EIF4EBP3O60516 100 aaPredicted RBP13.19□□□□□ -0.3
PRPF40B-208ENST00000548436 DAZ4Q86SG3 579 aaKnown RBP13.19□□□□□ -0.3
PRPF40B-208ENST00000548436 MUSTN1Q8IVN3 82 aa13.19□□□□□ -0.3
PRPF40B-208ENST00000548436 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.19□□□□□ -0.3
PRPF40B-208ENST00000548436 GEMIN7Q9H840 131 aaKnown RBP13.19□□□□□ -0.3
PRPF40B-208ENST00000548436 DAZ3Q9NR90 486 aaKnown RBP13.19□□□□□ -0.3
PRPF40B-208ENST00000548436 TMEM238C9JI98 176 aa13.19□□□□□ -0.3
PRPF40B-208ENST00000548436 MTURNQ8N3F0 131 aa13.19□□□□□ -0.3
PRPF40B-208ENST00000548436 LITAFQ99732 161 aa13.19□□□□□ -0.3
PRPF40B-208ENST00000548436 CDKN2A-AS1Q9UH64 79 aa13.19□□□□□ -0.3
PRPF40B-208ENST00000548436 PRO0461Q9UI25 63 aa13.19□□□□□ -0.3
PRPF40B-208ENST00000548436 OVOL2Q9BRP0 275 aa13.18□□□□□ -0.3
PRPF40B-208ENST00000548436 NDUFA12Q9UI09 145 aa13.18□□□□□ -0.3
PRPF40B-208ENST00000548436 TRGV2A0A075B6R0 118 aa13.17□□□□□ -0.3
PRPF40B-208ENST00000548436 LOC107984156A0A0G2JMH3 177 aa13.17□□□□□ -0.3
PRPF40B-208ENST00000548436 TEX48A0A1B0GUV7 120 aa13.17□□□□□ -0.3
PRPF40B-208ENST00000548436 TIRAPP58753 221 aa13.17□□□□□ -0.3
PRPF40B-208ENST00000548436 RPL24P83731 157 aaKnown RBP13.17□□□□□ -0.3
PRPF40B-208ENST00000548436 COX6A2Q02221 97 aa13.17□□□□□ -0.3
PRPF40B-208ENST00000548436 SBSPONQ8IVN8 264 aa13.17□□□□□ -0.3
PRPF40B-208ENST00000548436 ARL17AQ8IVW1 177 aa13.17□□□□□ -0.3
PRPF40B-208ENST00000548436 IGLV5-45A0A087WSX0 123 aa13.17□□□□□ -0.3
PRPF40B-208ENST00000548436 PRO1854Q9UHT4 67 aa13.17□□□□□ -0.3
PRPF40B-208ENST00000548436 PF4P02776 101 aa13.16□□□□□ -0.3
PRPF40B-208ENST00000548436 LINC00482Q8N8I6 264 aa13.16□□□□□ -0.3
PRPF40B-208ENST00000548436 LOC100131303A0A0U1RQF7 123 aa13.16□□□□□ -0.3
PRPF40B-208ENST00000548436 OTOGQ6ZRI0 2925 aa13.15□□□□□ -0.3
PRPF40B-208ENST00000548436 ADAMTSL4-AS1Q5T5F5 129 aa13.15□□□□□ -0.3
PRPF40B-208ENST00000548436 CSDC2Q9Y534 153 aaKnown RBP13.15□□□□□ -0.3
PRPF40B-208ENST00000548436 C2CD3Q4AC94 2353 aa13.15□□□□□ -0.3
PRPF40B-208ENST00000548436 LINC00242Q5T6M2 205 aa13.14□□□□□ -0.31
PRPF40B-208ENST00000548436 CYSRT1A8MQ03 144 aa13.14□□□□□ -0.31
PRPF40B-208ENST00000548436 PSMB2P49721 201 aa13.14□□□□□ -0.31
PRPF40B-208ENST00000548436 ZFAND6Q6FIF0 208 aa13.14□□□□□ -0.31
PRPF40B-208ENST00000548436 SH2D6Q7Z4S9 175 aa13.13□□□□□ -0.31
PRPF40B-208ENST00000548436 TMEM101Q96IK0 257 aa13.13□□□□□ -0.31
PRPF40B-208ENST00000548436 TRBV6-4A0A1B0GX49 114 aa13.12□□□□□ -0.31
PRPF40B-208ENST00000548436 ETDBQ3ZM63 59 aa13.12□□□□□ -0.31
PRPF40B-208ENST00000548436 FN1P02751 2386 aaKnown RBP13.12□□□□□ -0.31
PRPF40B-208ENST00000548436 A0A0B4J2C4 111 aa13.12□□□□□ -0.31
PRPF40B-208ENST00000548436 IGHV3-33P01772 117 aa13.12□□□□□ -0.31
PRPF40B-208ENST00000548436 PCP4P48539 62 aa13.12□□□□□ -0.31
PRPF40B-208ENST00000548436 FAM19A3Q7Z5A8 133 aa13.12□□□□□ -0.31
PRPF40B-208ENST00000548436 GTSF1LQ9H1H1 148 aa13.12□□□□□ -0.31
PRPF40B-208ENST00000548436 CDC42SE2Q9NRR3 84 aa13.12□□□□□ -0.31
PRPF40B-208ENST00000548436 TRGV4A0A0C4DH28 118 aa13.11□□□□□ -0.31
PRPF40B-208ENST00000548436 HERVK_113P63121 156 aa13.11□□□□□ -0.31
PRPF40B-208ENST00000548436 SPATA3Q8NHX4 192 aa13.11□□□□□ -0.31
PRPF40B-208ENST00000548436 SPANXDQ9BXN6 97 aa13.11□□□□□ -0.31
PRPF40B-208ENST00000548436 SPANXCQ9NY87 97 aa13.11□□□□□ -0.31
PRPF40B-208ENST00000548436 INAFM1C9JVW0 142 aa13.11□□□□□ -0.31
PRPF40B-208ENST00000548436 TCL1BO95988 128 aa13.11□□□□□ -0.31
PRPF40B-208ENST00000548436 TRAV13-1A0A0B4J241 112 aa13.1□□□□□ -0.31
PRPF40B-208ENST00000548436 CIDEAO60543 219 aa13.1□□□□□ -0.31
PRPF40B-208ENST00000548436 PRSS2P07478 247 aa13.1□□□□□ -0.31
PRPF40B-208ENST00000548436 FHL2Q14192 279 aa13.1□□□□□ -0.31
PRPF40B-208ENST00000548436 SMCPP49901 116 aaPredicted RBP13.09□□□□□ -0.31
PRPF40B-208ENST00000548436 LYRM7Q5U5X0 104 aa13.09□□□□□ -0.31
PRPF40B-208ENST00000548436 TMEM243Q9BU79 118 aa13.09□□□□□ -0.31
PRPF40B-208ENST00000548436 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.09□□□□□ -0.31
PRPF40B-208ENST00000548436 IGLV5-39A0A0G2JS06 123 aa13.09□□□□□ -0.31
PRPF40B-208ENST00000548436 VWFP04275 2813 aa13.08□□□□□ -0.31
PRPF40B-208ENST00000548436 MIAQ16674 131 aa13.08□□□□□ -0.32
PRPF40B-208ENST00000548436 H7C2G1 150 aa13.08□□□□□ -0.32
PRPF40B-208ENST00000548436 UBE2L6O14933 153 aa13.08□□□□□ -0.32
PRPF40B-208ENST00000548436 NDUFA1O15239 70 aa13.08□□□□□ -0.32
PRPF40B-208ENST00000548436 CRLF1O75462 422 aa13.08□□□□□ -0.32
PRPF40B-208ENST00000548436 ERG28Q9UKR5 140 aa13.08□□□□□ -0.32
PRPF40B-208ENST00000548436 NPC2P61916 151 aa13.07□□□□□ -0.32
PRPF40B-208ENST00000548436 SMIM1B2RUZ4 78 aa13.06□□□□□ -0.32
PRPF40B-208ENST00000548436 SCGB1C2P0DMR2 95 aa13.06□□□□□ -0.32
PRPF40B-208ENST00000548436 C21orf62-AS1Q17RA5 79 aa13.06□□□□□ -0.32
PRPF40B-208ENST00000548436 TRBV20-1A0A075B6N2 111 aa13.06□□□□□ -0.32
PRPF40B-208ENST00000548436 SMAGPQ0VAQ4 97 aa13.06□□□□□ -0.32
PRPF40B-208ENST00000548436 TIMM17BO60830 172 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms