RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 DCAF1Q9Y4B6 1507 aa0.26□□□□□ -2.37
CD44-215ENST00000525241 SSC5DA1L4H1 1573 aa0.26□□□□□ -2.37
CD44-215ENST00000525241 UNC13BO14795 1591 aa0.26□□□□□ -2.37
CD44-215ENST00000525241 ABCA3Q99758 1704 aa0.26□□□□□ -2.37
CD44-215ENST00000525241 DOCK1Q14185 1865 aa0.26□□□□□ -2.37
CD44-215ENST00000525241 PAPPA2Q9BXP8 1791 aa0.25□□□□□ -2.37
CD44-215ENST00000525241 TULP4Q9NRJ4 1543 aa0.25□□□□□ -2.37
CD44-215ENST00000525241 J3QLW9 94 aa0.25□□□□□ -2.37
CD44-215ENST00000525241 YPEL1O60688 119 aa0.25□□□□□ -2.37
CD44-215ENST00000525241 RBP4P02753 201 aa0.25□□□□□ -2.37
CD44-215ENST00000525241 PYYP10082 97 aa0.25□□□□□ -2.37
CD44-215ENST00000525241 ASIPP42127 132 aa0.25□□□□□ -2.37
CD44-215ENST00000525241 NPC2P61916 151 aa0.25□□□□□ -2.37
CD44-215ENST00000525241 IQCJQ1A5X6 159 aa0.25□□□□□ -2.37
CD44-215ENST00000525241 SPINK13Q1W4C9 94 aa0.25□□□□□ -2.37
CD44-215ENST00000525241 C6orf52Q5T4I8 152 aa0.25□□□□□ -2.37
CD44-215ENST00000525241 LINC01545Q5VT33 79 aa0.25□□□□□ -2.37
CD44-215ENST00000525241 NDUFA11Q86Y39 141 aa0.25□□□□□ -2.37
CD44-215ENST00000525241 SMIM3Q9BZL3 60 aa0.25□□□□□ -2.37
CD44-215ENST00000525241 HUWE1Q7Z6Z7 4374 aaKnown RBP0.25□□□□□ -2.37
CD44-215ENST00000525241 WNK2Q9Y3S1 2297 aa0.25□□□□□ -2.37
CD44-215ENST00000525241 PREX2Q70Z35 1606 aa0.24□□□□□ -2.37
CD44-215ENST00000525241 GRIN2AQ12879 1464 aa0.24□□□□□ -2.37
CD44-215ENST00000525241 GAPVD1Q14C86 1478 aa0.24□□□□□ -2.37
CD44-215ENST00000525241 NRXN1Q9ULB1 1477 aa0.24□□□□□ -2.37
CD44-215ENST00000525241 TMEM2Q9UHN6 1383 aa0.24□□□□□ -2.37
CD44-215ENST00000525241 TRAV17A0A0B4J275 112 aa0.24□□□□□ -2.37
CD44-215ENST00000525241 TEX49A0A1B0GTD5 131 aa0.24□□□□□ -2.37
CD44-215ENST00000525241 M0R129 80 aa0.24□□□□□ -2.37
CD44-215ENST00000525241 UNQ5815/PRO19632Q6UWF5 114 aa0.24□□□□□ -2.37
CD44-215ENST00000525241 MAFIPQ8WZ33 124 aa0.24□□□□□ -2.37
CD44-215ENST00000525241 SDF2Q99470 211 aa0.24□□□□□ -2.37
CD44-215ENST00000525241 TMEM14BQ9NUH8 114 aa0.24□□□□□ -2.37
CD44-215ENST00000525241 PLAC8Q9NZF1 115 aa0.24□□□□□ -2.37
CD44-215ENST00000525241 NWD2Q9ULI1 1742 aa0.24□□□□□ -2.37
CD44-215ENST00000525241 PLCE1Q9P212 2302 aa0.24□□□□□ -2.37
CD44-215ENST00000525241 C10orf71Q711Q0 1435 aa0.23□□□□□ -2.37
CD44-215ENST00000525241 DNAH6Q9C0G6 4158 aa0.23□□□□□ -2.37
CD44-215ENST00000525241 ZNF670-ZNF695F2Z2N8 137 aa0.23□□□□□ -2.37
CD44-215ENST00000525241 NPFFO15130 113 aa0.23□□□□□ -2.37
CD44-215ENST00000525241 ELOF1P60002 83 aaKnown RBP0.23□□□□□ -2.37
CD44-215ENST00000525241 MIC13Q5XKP0 118 aa0.23□□□□□ -2.37
CD44-215ENST00000525241 CTAGE3PQ8IX95 158 aa0.23□□□□□ -2.37
CD44-215ENST00000525241 MMGT1Q8N4V1 131 aa0.23□□□□□ -2.37
CD44-215ENST00000525241 VSTM2AQ8TAG5 236 aa0.23□□□□□ -2.37
CD44-215ENST00000525241 IFI27L1Q96BM0 104 aa0.23□□□□□ -2.37
CD44-215ENST00000525241 CACNA1CQ13936 2221 aa0.23□□□□□ -2.37
CD44-215ENST00000525241 QRICH2Q9H0J4 1663 aa0.23□□□□□ -2.37
CD44-215ENST00000525241 LRRC37A3O60309 1634 aa0.23□□□□□ -2.37
CD44-215ENST00000525241 SHROOM2Q13796 1616 aa0.23□□□□□ -2.37
CD44-215ENST00000525241 CPS1P31327 1500 aa0.23□□□□□ -2.37
CD44-215ENST00000525241 PRDM2Q13029 1718 aa0.22□□□□□ -2.37
CD44-215ENST00000525241 NUP188Q5SRE5 1749 aa0.22□□□□□ -2.37
CD44-215ENST00000525241 ZC3H13Q5T200 1668 aaKnown RBP0.22□□□□□ -2.37
CD44-215ENST00000525241 CLPSL1A2RUU4 121 aa0.22□□□□□ -2.37
CD44-215ENST00000525241 CCDC179H3BU77 68 aa0.22□□□□□ -2.37
CD44-215ENST00000525241 FXYD1O00168 92 aa0.22□□□□□ -2.37
CD44-215ENST00000525241 CCL3L1P16619 93 aa0.22□□□□□ -2.37
CD44-215ENST00000525241 FXYD6P3P58550 94 aa0.22□□□□□ -2.37
CD44-215ENST00000525241 NCS1P62166 190 aa0.22□□□□□ -2.37
CD44-215ENST00000525241 RPS25P62851 125 aaKnown RBP0.22□□□□□ -2.37
CD44-215ENST00000525241 Q6ZUT4 128 aa0.22□□□□□ -2.37
CD44-215ENST00000525241 NDUFA12Q9UI09 145 aa0.22□□□□□ -2.37
CD44-215ENST00000525241 SMARCA2P51531 1590 aa0.22□□□□□ -2.37
CD44-215ENST00000525241 DOCK2Q92608 1830 aa0.22□□□□□ -2.37
CD44-215ENST00000525241 EEA1Q15075 1411 aa0.21□□□□□ -2.38
CD44-215ENST00000525241 USP32Q8NFA0 1604 aa0.21□□□□□ -2.38
CD44-215ENST00000525241 LPAP08519 4548 aa0.21□□□□□ -2.38
CD44-215ENST00000525241 ADAMTS12P58397 1594 aa0.21□□□□□ -2.38
CD44-215ENST00000525241 NDUFA2O43678 99 aa0.21□□□□□ -2.38
CD44-215ENST00000525241 SPRR2EP22531 72 aa0.21□□□□□ -2.38
CD44-215ENST00000525241 SPRR2BP35325 72 aa0.21□□□□□ -2.38
CD44-215ENST00000525241 SPRR2AP35326 72 aa0.21□□□□□ -2.38
CD44-215ENST00000525241 SMCO1Q147U7 214 aa0.21□□□□□ -2.38
CD44-215ENST00000525241 TSKUQ8WUA8 353 aa0.21□□□□□ -2.38
CD44-215ENST00000525241 Q96NJ1 140 aa0.21□□□□□ -2.38
CD44-215ENST00000525241 TPT1P8Q9HAU6 139 aa0.21□□□□□ -2.38
CD44-215ENST00000525241 SAR1AQ9NR31 198 aa0.21□□□□□ -2.38
CD44-215ENST00000525241 COPZ2Q9P299 210 aa0.21□□□□□ -2.38
CD44-215ENST00000525241 ERG28Q9UKR5 140 aa0.21□□□□□ -2.38
CD44-215ENST00000525241 CDK13Q14004 1512 aaKnown RBP0.21□□□□□ -2.38
CD44-215ENST00000525241 AKAP6Q13023 2319 aa0.21□□□□□ -2.38
CD44-215ENST00000525241 TNXBP22105 4242 aa0.21□□□□□ -2.38
CD44-215ENST00000525241 MUC17Q685J3 4493 aa0.21□□□□□ -2.38
CD44-215ENST00000525241 DNAH10Q8IVF4 4471 aa0.21□□□□□ -2.38
CD44-215ENST00000525241 PI4KAP42356 2102 aa0.2□□□□□ -2.38
CD44-215ENST00000525241 LAMC3Q9Y6N6 1575 aa0.2□□□□□ -2.38
CD44-215ENST00000525241 TRAV12-2A0A075B6T6 113 aa0.2□□□□□ -2.38
CD44-215ENST00000525241 M0R2Z0 102 aa0.2□□□□□ -2.38
CD44-215ENST00000525241 SPRR2DP22532 72 aa0.2□□□□□ -2.38
CD44-215ENST00000525241 SPINK7P58062 85 aa0.2□□□□□ -2.38
CD44-215ENST00000525241 S100A12P80511 92 aa0.2□□□□□ -2.38
CD44-215ENST00000525241 VPS25Q9BRG1 176 aa0.2□□□□□ -2.38
CD44-215ENST00000525241 WDR7Q9Y4E6 1490 aa0.2□□□□□ -2.38
CD44-215ENST00000525241 NRXN3Q9Y4C0 1643 aa0.2□□□□□ -2.38
CD44-215ENST00000525241 PLXNB2O15031 1838 aa0.2□□□□□ -2.38
CD44-215ENST00000525241 DNAH3Q8TD57 4116 aa0.19□□□□□ -2.38
CD44-215ENST00000525241 IFT172Q9UG01 1749 aa0.19□□□□□ -2.38
CD44-215ENST00000525241 MARF1Q9Y4F3 1742 aaKnown RBP0.19□□□□□ -2.38
CD44-215ENST00000525241 CROCC2H7BZ55 1655 aa0.19□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 102.4 ms