RNA–Protein interactions for RNA: ENST00000520948.5

VEGFA-222, Transcript of vascular endothelial growth factor A, human

TSL 1 (best) BASIC

Gene VEGFA, Length 1,199 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-222	ENST00000520948	AMMECR1L	Q6DCA0	310 aa		12.05	□□□□□ -0.48
VEGFA-222	ENST00000520948	NXT2	Q9NPJ8	142 aa	Known RBP	12.05	□□□□□ -0.48
VEGFA-222	ENST00000520948	UBE2D4	Q9Y2X8	147 aa		12.05	□□□□□ -0.48
VEGFA-222	ENST00000520948	CSDC2	Q9Y534	153 aa	Known RBP	12.05	□□□□□ -0.48
VEGFA-222	ENST00000520948	COLCA2	A8K830	154 aa		12.04	□□□□□ -0.48
VEGFA-222	ENST00000520948		K7EMI3	77 aa		12.04	□□□□□ -0.48
VEGFA-222	ENST00000520948	RAB5A	P20339	215 aa		12.04	□□□□□ -0.48
VEGFA-222	ENST00000520948	MIA	Q16674	131 aa		12.04	□□□□□ -0.48
VEGFA-222	ENST00000520948	RNASEK	Q6P5S7	137 aa	Known RBP	12.04	□□□□□ -0.48
VEGFA-222	ENST00000520948	TIMM21	Q9BVV7	248 aa		12.04	□□□□□ -0.48
VEGFA-222	ENST00000520948	TM2D2	Q9BX73	214 aa		12.04	□□□□□ -0.48
VEGFA-222	ENST00000520948	LINC01546	A6NGU7	62 aa		12.03	□□□□□ -0.48
VEGFA-222	ENST00000520948	KRTAP26-1	Q6PEX3	210 aa		12.03	□□□□□ -0.48
VEGFA-222	ENST00000520948	TMEM18	Q96B42	140 aa		12.03	□□□□□ -0.48
VEGFA-222	ENST00000520948	CDC42SE2	Q9NRR3	84 aa		12.03	□□□□□ -0.48
VEGFA-222	ENST00000520948	COX11	Q9Y6N1	276 aa		12.03	□□□□□ -0.48
VEGFA-222	ENST00000520948	LRCOL1	A6NCL2	159 aa		12.02	□□□□□ -0.49
VEGFA-222	ENST00000520948	EPM2A	B3EWF7	344 aa		12.02	□□□□□ -0.49
VEGFA-222	ENST00000520948	CRP	P02741	224 aa		12.02	□□□□□ -0.49
VEGFA-222	ENST00000520948	RPL39	P62891	51 aa	Known RBP	12.02	□□□□□ -0.49
VEGFA-222	ENST00000520948	FAM104A	Q969W3	186 aa		12.02	□□□□□ -0.49
VEGFA-222	ENST00000520948	RMI2	Q96E14	147 aa		12.02	□□□□□ -0.49
VEGFA-222	ENST00000520948	SCO1	O75880	301 aa		12.01	□□□□□ -0.49
VEGFA-222	ENST00000520948	CLPSL2	Q6UWE3	100 aa		12.01	□□□□□ -0.49
VEGFA-222	ENST00000520948	OR5A1	Q8NGJ0	315 aa		12.01	□□□□□ -0.49
VEGFA-222	ENST00000520948	TMEM101	Q96IK0	257 aa		12.01	□□□□□ -0.49
VEGFA-222	ENST00000520948	IGKV2D-24	A0A075B6R9	120 aa		12	□□□□□ -0.49
VEGFA-222	ENST00000520948	TRAV8-4	A0A0B4J246	113 aa		12	□□□□□ -0.49
VEGFA-222	ENST00000520948	SMAGP	Q0VAQ4	97 aa		12	□□□□□ -0.49
VEGFA-222	ENST00000520948	ORMDL2	Q53FV1	153 aa		12	□□□□□ -0.49
VEGFA-222	ENST00000520948	ZNF664	Q8N3J9	261 aa		12	□□□□□ -0.49
VEGFA-222	ENST00000520948	PRSS3P2	Q8NHM4	247 aa		12	□□□□□ -0.49
VEGFA-222	ENST00000520948	C18orf32	Q8TCD1	76 aa		12	□□□□□ -0.49
VEGFA-222	ENST00000520948		A0A087WTM6	91 aa		11.99	□□□□□ -0.49
VEGFA-222	ENST00000520948	PSCA	O43653	123 aa		11.99	□□□□□ -0.49
VEGFA-222	ENST00000520948	C1orf43	Q9BWL3	253 aa		11.99	□□□□□ -0.49
VEGFA-222	ENST00000520948	SPANXA1	Q9NS26	97 aa		11.99	□□□□□ -0.49
VEGFA-222	ENST00000520948	DGAT2L7P	Q6IED9	249 aa		11.98	□□□□□ -0.49
VEGFA-222	ENST00000520948	URB1-AS1	Q96HZ7	61 aa		11.98	□□□□□ -0.49
VEGFA-222	ENST00000520948	PYGO1	Q9Y3Y4	419 aa		11.98	□□□□□ -0.49
VEGFA-222	ENST00000520948	HERC1	Q15751	4861 aa		11.98	□□□□□ -0.49
VEGFA-222	ENST00000520948	S100A1	P23297	94 aa		11.97	□□□□□ -0.49
VEGFA-222	ENST00000520948	MRPS36	P82909	103 aa	Known RBP	11.97	□□□□□ -0.49
VEGFA-222	ENST00000520948	C2orf66	Q6UXQ4	117 aa		11.97	□□□□□ -0.49
VEGFA-222	ENST00000520948	IGLV10-54	A0A075B6I4	117 aa		11.96	□□□□□ -0.49
VEGFA-222	ENST00000520948	EREG	O14944	169 aa		11.96	□□□□□ -0.49
VEGFA-222	ENST00000520948	TRGC2	P03986	189 aa		11.96	□□□□□ -0.49
VEGFA-222	ENST00000520948	PGPEP1	Q9NXJ5	209 aa		11.96	□□□□□ -0.49
VEGFA-222	ENST00000520948	LINC00959	A0A1B0GUT2	108 aa		11.95	□□□□□ -0.5
VEGFA-222	ENST00000520948	ATP6V1G1	O75348	118 aa		11.95	□□□□□ -0.5
VEGFA-222	ENST00000520948	INAFM2	P0DMQ5	153 aa		11.95	□□□□□ -0.5
VEGFA-222	ENST00000520948	XG	P55808	180 aa		11.95	□□□□□ -0.5
VEGFA-222	ENST00000520948	WFDC2	Q14508	124 aa		11.95	□□□□□ -0.5
VEGFA-222	ENST00000520948		Q6ZUT4	128 aa		11.95	□□□□□ -0.5
VEGFA-222	ENST00000520948	OPRPN	Q99935	248 aa	Predicted RBP	11.95	□□□□□ -0.5
VEGFA-222	ENST00000520948	CYSLTR1	Q9Y271	337 aa		11.95	□□□□□ -0.5
VEGFA-222	ENST00000520948	G0S2	P27469	103 aa		11.94	□□□□□ -0.5
VEGFA-222	ENST00000520948	BAALC	Q8WXS3	180 aa		11.94	□□□□□ -0.5
VEGFA-222	ENST00000520948	TOMM6	Q96B49	74 aa		11.94	□□□□□ -0.5
VEGFA-222	ENST00000520948	IGKV3OR2-268	A0A0C4DH90	116 aa		11.93	□□□□□ -0.5
VEGFA-222	ENST00000520948	IGIP	A6NJ69	53 aa		11.93	□□□□□ -0.5
VEGFA-222	ENST00000520948	LINC00614	P0C842	121 aa		11.93	□□□□□ -0.5
VEGFA-222	ENST00000520948	RNASE13	Q5GAN3	156 aa	Known RBP	11.93	□□□□□ -0.5
VEGFA-222	ENST00000520948		Q5VSD8	79 aa		11.93	□□□□□ -0.5
VEGFA-222	ENST00000520948	FA2H	Q7L5A8	372 aa		11.93	□□□□□ -0.5
VEGFA-222	ENST00000520948	IGLV4-3	A0A075B6K6	122 aa		11.92	□□□□□ -0.5
VEGFA-222	ENST00000520948	NPS	P0C0P6	89 aa		11.92	□□□□□ -0.5
VEGFA-222	ENST00000520948	KRTAP10-1	P60331	282 aa		11.92	□□□□□ -0.5
VEGFA-222	ENST00000520948	CDPF1	Q6NVV7	123 aa		11.92	□□□□□ -0.5
VEGFA-222	ENST00000520948	CHCHD10	Q8WYQ3	142 aa	Predicted RBP	11.92	□□□□□ -0.5
VEGFA-222	ENST00000520948	FAT1	Q14517	4588 aa		11.91	□□□□□ -0.5
VEGFA-222	ENST00000520948	CCL25	O15444	150 aa		11.91	□□□□□ -0.5
VEGFA-222	ENST00000520948	AP5S1	Q9NUS5	200 aa		11.91	□□□□□ -0.5
VEGFA-222	ENST00000520948		A0A096LNJ9	63 aa		11.9	□□□□□ -0.5
VEGFA-222	ENST00000520948	LINC01549	A6NIU2	74 aa		11.9	□□□□□ -0.5
VEGFA-222	ENST00000520948	SS18	Q15532	418 aa		11.9	□□□□□ -0.5
VEGFA-222	ENST00000520948		Q8N814	137 aa		11.9	□□□□□ -0.5
VEGFA-222	ENST00000520948	GAGE12H	A6NDE8	117 aa		11.89	□□□□□ -0.51
VEGFA-222	ENST00000520948	C1orf196	B1AJZ1	125 aa		11.89	□□□□□ -0.51
VEGFA-222	ENST00000520948	LECT2	O14960	151 aa		11.89	□□□□□ -0.51
VEGFA-222	ENST00000520948	RAB5B	P61020	215 aa		11.89	□□□□□ -0.51
VEGFA-222	ENST00000520948	FOXI1	Q12951	378 aa		11.89	□□□□□ -0.51
VEGFA-222	ENST00000520948	TMEM141	Q96I45	108 aa		11.89	□□□□□ -0.51
VEGFA-222	ENST00000520948	AMELX	Q99217	191 aa		11.89	□□□□□ -0.51
VEGFA-222	ENST00000520948	TIMM17A	Q99595	171 aa		11.89	□□□□□ -0.51
VEGFA-222	ENST00000520948	SMR3B	P02814	79 aa	Predicted RBP	11.88	□□□□□ -0.51
VEGFA-222	ENST00000520948	HAMP	P81172	84 aa		11.88	□□□□□ -0.51
VEGFA-222	ENST00000520948	LINC00173	Q6ZV60	143 aa		11.88	□□□□□ -0.51
VEGFA-222	ENST00000520948	ERAS	Q7Z444	233 aa		11.88	□□□□□ -0.51
VEGFA-222	ENST00000520948	USP17L23	D6RBM5	183 aa		11.87	□□□□□ -0.51
VEGFA-222	ENST00000520948	CD164L2	Q6UWJ8	174 aa		11.87	□□□□□ -0.51
VEGFA-222	ENST00000520948	DMBT1	Q9UGM3	2413 aa	Predicted RBP	11.87	□□□□□ -0.51
VEGFA-222	ENST00000520948	TRAV13-1	A0A0B4J241	112 aa		11.86	□□□□□ -0.51
VEGFA-222	ENST00000520948	CHCHD1	Q96BP2	118 aa	Known RBP	11.86	□□□□□ -0.51
VEGFA-222	ENST00000520948	SCGB3A1	Q96QR1	104 aa		11.86	□□□□□ -0.51
VEGFA-222	ENST00000520948	XCL1	P47992	114 aa		11.85	□□□□□ -0.51
VEGFA-222	ENST00000520948	NTN5	Q8WTR8	489 aa	Predicted RBP	11.85	□□□□□ -0.51
VEGFA-222	ENST00000520948	PRSS1	P07477	247 aa		11.84	□□□□□ -0.51
VEGFA-222	ENST00000520948	GCSH	P23434	173 aa		11.84	□□□□□ -0.51
VEGFA-222	ENST00000520948	PDZD11	Q5EBL8	140 aa		11.84	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms