RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 IL9P15248 144 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 CCL18P55774 89 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 CAV3P56539 151 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 DEFA5Q01523 94 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 SPAG11BQ08648 103 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 COX17Q14061 63 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 WFDC2Q14508 124 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 FXYD3Q14802 87 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 NMSQ5H8A3 153 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 TMEM170BQ5T4T1 132 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 GDF5OSQ5U4N7 250 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 CFAP126Q5VTH2 177 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 ATP5EP2Q5VTU8 51 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 KRTAP5-7Q6L8G8 165 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 SPAG11AQ6PDA7 123 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 C10orf99Q6UWK7 81 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 LINC00575Q6W349 94 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 HEPN1Q6WQI6 88 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 Q6ZQY7 126 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 LINC00643Q86TS7 51 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 FAM223AQ8IWN6 122 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 ZNF563Q8TA94 476 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 C18orf32Q8TCD1 76 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 S100ZQ8WXG8 99 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 ZNF625Q96I27 306 aaPredicted RBP0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 CYSTM1Q9H1C7 97 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 WFDC10AQ9H1F0 79 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 TMEM14BQ9NUH8 114 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 HIGD1BQ9P298 99 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 ARL2-SNX15V9GYD0 113 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 V9GYV3 84 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 CROCCQ5TZA2 2017 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 SCN3AQ9NY46 2000 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 SHPRHQ149N8 1683 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 PLCH1Q4KWH8 1693 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 DOCK9Q9BZ29 2069 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 LRRC37A2A6NM11 1700 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 RGPD1P0DJD0 1748 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 COL5A3P25940 1745 aaPredicted RBP0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 ITSN1Q15811 1721 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 LOC285556D6RIA3 1793 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 PRR14LQ5THK1 2151 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 MUC4Q99102 2169 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 ATP7BP35670 1465 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 C1orf167Q5SNV9 1468 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 RALGAPBQ86X10 1494 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 NEXMIFQ5QGS0 1516 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 CLASP1Q7Z460 1538 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 ABCA10Q8WWZ4 1543 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 TNRC6AQ8NDV7 1962 aaKnown RBP0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 KIAA1549Q9HCM3 1950 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 HIVEP2P31629 2446 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 CITO14578 2027 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 MAST1Q9Y2H9 1570 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 CEP170BQ9Y4F5 1589 aaPredicted RBP0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 PIK3C2BO00750 1634 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 MADDQ8WXG6 1647 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 EIF2AK4Q9P2K8 1649 aaKnown RBP0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 C5P01031 1676 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 NHSQ6T4R5 1651 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 CFAP43Q8NDM7 1665 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 PKD1L3Q7Z443 1732 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 IFT172Q9UG01 1749 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 CRYBG1Q9Y4K1 1723 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 KDM3BQ7LBC6 1761 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 A0A087WTM6 91 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 A0A087WWC5 75 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 TRAV1-2A0A0B4J238 106 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 MYMXA0A1B0GTQ4 84 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 A0A1B0GWA3 101 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 IGKV2-29A2NJV5 120 aaPredicted RBP0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 FAM223BA6NKX1 122 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 CEBPZOSA8MTT3 80 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 UMAD1C9J7I0 102 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 F8WEM9 126 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 J3QRE1 110 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 M0R135 149 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 FXYD1O00168 92 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 TFF1P04155 84 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 MGPP08493 103 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 ARMS2P0C7Q2 107 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 SMIM13P0DJ93 91 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 EFNA4P52798 201 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 DEFB103AP81534 67 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 PLGLAQ15195 96 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 KRTAP21-2Q3LI59 83 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 Q5BKY6 102 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 DEFB121Q5J5C9 76 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 LCE3EQ5T5B0 92 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 UNQ6190/PRO20217Q6UXQ8 127 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 BRD3OSQ6XYD6 125 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 Q6ZRN7 208 aaPredicted RBP0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 BAGE3Q86Y29 109 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 BAGE2Q86Y30 109 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 C5orf56Q8N8D9 126 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 SMIM4Q8WVI0 70 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 CCL19Q99731 98 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 BPESC1Q9GZL8 116 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 LINC00846Q9NV44 126 aa0.28□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms