RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 MRPL18Q9H0U6 180 aaKnown RBP9.47□□□□□ -0.89
NUP54-216ENST00000514901 NXT2Q9NPJ8 142 aaKnown RBP9.47□□□□□ -0.89
NUP54-216ENST00000514901 SMCO4Q9NRQ5 59 aa9.47□□□□□ -0.89
NUP54-216ENST00000514901 CDPF1Q6NVV7 123 aa9.46□□□□□ -0.9
NUP54-216ENST00000514901 MAPKAPK5-AS1Q8N8E1 139 aa9.46□□□□□ -0.9
NUP54-216ENST00000514901 CDC42SE2Q9NRR3 84 aa9.46□□□□□ -0.9
NUP54-216ENST00000514901 G0S2P27469 103 aa9.45□□□□□ -0.9
NUP54-216ENST00000514901 ORMDL2Q53FV1 153 aa9.45□□□□□ -0.9
NUP54-216ENST00000514901 ZNF664Q8N3J9 261 aa9.45□□□□□ -0.9
NUP54-216ENST00000514901 BAALCQ8WXS3 180 aa9.45□□□□□ -0.9
NUP54-216ENST00000514901 UBE2D4Q9Y2X8 147 aa9.45□□□□□ -0.9
NUP54-216ENST00000514901 TRAPPC1Q9Y5R8 145 aa9.45□□□□□ -0.9
NUP54-216ENST00000514901 DYNC1H1Q14204 4646 aaKnown RBP9.44□□□□□ -0.9
NUP54-216ENST00000514901 C16orf90A8MZG2 172 aa9.44□□□□□ -0.9
NUP54-216ENST00000514901 KRTAP10-2P60368 255 aa9.44□□□□□ -0.9
NUP54-216ENST00000514901 C14orf177Q52M58 125 aa9.44□□□□□ -0.9
NUP54-216ENST00000514901 Q8N814 137 aa9.44□□□□□ -0.9
NUP54-216ENST00000514901 NTN5Q8WTR8 489 aaPredicted RBP9.44□□□□□ -0.9
NUP54-216ENST00000514901 YPEL4Q96NS1 127 aa9.44□□□□□ -0.9
NUP54-216ENST00000514901 ALKBH7Q9BT30 221 aaPredicted RBP9.44□□□□□ -0.9
NUP54-216ENST00000514901 SPANXA1Q9NS26 97 aa9.44□□□□□ -0.9
NUP54-216ENST00000514901 IGLV10-54A0A075B6I4 117 aa9.43□□□□□ -0.9
NUP54-216ENST00000514901 CCL25O15444 150 aa9.43□□□□□ -0.9
NUP54-216ENST00000514901 KRTAP26-1Q6PEX3 210 aa9.43□□□□□ -0.9
NUP54-216ENST00000514901 PRSS3P2Q8NHM4 247 aa9.43□□□□□ -0.9
NUP54-216ENST00000514901 BIRC6Q9NR09 4857 aa9.42□□□□□ -0.9
NUP54-216ENST00000514901 IGKV3OR2-268A0A0C4DH90 116 aa9.42□□□□□ -0.9
NUP54-216ENST00000514901 IFI27P40305 119 aaPredicted RBP9.42□□□□□ -0.9
NUP54-216ENST00000514901 RPL39P62891 51 aaKnown RBP9.42□□□□□ -0.9
NUP54-216ENST00000514901 MRPS36P82909 103 aaKnown RBP9.41□□□□□ -0.9
NUP54-216ENST00000514901 SS18Q15532 418 aa9.41□□□□□ -0.9
NUP54-216ENST00000514901 CHCHD10Q8WYQ3 142 aaPredicted RBP9.41□□□□□ -0.9
NUP54-216ENST00000514901 PYGO1Q9Y3Y4 419 aa9.41□□□□□ -0.9
NUP54-216ENST00000514901 LINC00959A0A1B0GUT2 108 aa9.4□□□□□ -0.9
NUP54-216ENST00000514901 LECT2O14960 151 aa9.4□□□□□ -0.9
NUP54-216ENST00000514901 WFDC2Q14508 124 aa9.4□□□□□ -0.9
NUP54-216ENST00000514901 CBLN2Q8IUK8 224 aa9.4□□□□□ -0.9
NUP54-216ENST00000514901 CYSLTR1Q9Y271 337 aa9.4□□□□□ -0.9
NUP54-216ENST00000514901 IGLV5-52A0A0A0MRZ9 124 aa9.39□□□□□ -0.91
NUP54-216ENST00000514901 GAGE12HA6NDE8 117 aa9.39□□□□□ -0.91
NUP54-216ENST00000514901 C1orf196B1AJZ1 125 aa9.39□□□□□ -0.91
NUP54-216ENST00000514901 CFAP161Q6P656 301 aa9.39□□□□□ -0.91
NUP54-216ENST00000514901 C2orf66Q6UXQ4 117 aa9.39□□□□□ -0.91
NUP54-216ENST00000514901 DNAH5Q8TE73 4624 aa9.38□□□□□ -0.91
NUP54-216ENST00000514901 LINC01546A6NGU7 62 aa9.38□□□□□ -0.91
NUP54-216ENST00000514901 LINC01549A6NIU2 74 aa9.38□□□□□ -0.91
NUP54-216ENST00000514901 USP17L23D6RBM5 183 aa9.38□□□□□ -0.91
NUP54-216ENST00000514901 NPSP0C0P6 89 aa9.38□□□□□ -0.91
NUP54-216ENST00000514901 Q6ZUT4 128 aa9.38□□□□□ -0.91
NUP54-216ENST00000514901 FA2HQ7L5A8 372 aa9.38□□□□□ -0.91
NUP54-216ENST00000514901 LRP1BQ9NZR2 4599 aa9.37□□□□□ -0.91
NUP54-216ENST00000514901 CD164L2Q6UWJ8 174 aa9.37□□□□□ -0.91
NUP54-216ENST00000514901 TRAV13-1A0A0B4J241 112 aa9.36□□□□□ -0.91
NUP54-216ENST00000514901 GCSHP23434 173 aa9.36□□□□□ -0.91
NUP54-216ENST00000514901 XCL1P47992 114 aa9.36□□□□□ -0.91
NUP54-216ENST00000514901 TMEM141Q96I45 108 aa9.36□□□□□ -0.91
NUP54-216ENST00000514901 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.35□□□□□ -0.91
NUP54-216ENST00000514901 RAB5BP61020 215 aa9.35□□□□□ -0.91
NUP54-216ENST00000514901 FOXI1Q12951 378 aa9.35□□□□□ -0.91
NUP54-216ENST00000514901 RNASE13Q5GAN3 156 aaKnown RBP9.35□□□□□ -0.91
NUP54-216ENST00000514901 PAPPA-AS1Q5QFB9 102 aa9.35□□□□□ -0.91
NUP54-216ENST00000514901 Q6ZN92 141 aa9.35□□□□□ -0.91
NUP54-216ENST00000514901 C18orf32Q8TCD1 76 aa9.35□□□□□ -0.91
NUP54-216ENST00000514901 FAM104AQ969W3 186 aa9.35□□□□□ -0.91
NUP54-216ENST00000514901 TOMM6Q96B49 74 aa9.35□□□□□ -0.91
NUP54-216ENST00000514901 OPRPNQ99935 248 aaPredicted RBP9.35□□□□□ -0.91
NUP54-216ENST00000514901 IGLV4-3A0A075B6K6 122 aa9.34□□□□□ -0.91
NUP54-216ENST00000514901 IGIPA6NJ69 53 aa9.34□□□□□ -0.91
NUP54-216ENST00000514901 PRSS1P07477 247 aa9.34□□□□□ -0.91
NUP54-216ENST00000514901 LINC00614P0C842 121 aa9.34□□□□□ -0.91
NUP54-216ENST00000514901 FUSP35637 526 aaKnown RBP eCLIP9.34□□□□□ -0.91
NUP54-216ENST00000514901 TIMM17AQ99595 171 aa9.34□□□□□ -0.91
NUP54-216ENST00000514901 AP5S1Q9NUS5 200 aa9.34□□□□□ -0.91
NUP54-216ENST00000514901 IFITM10A6NMD0 228 aa9.33□□□□□ -0.92
NUP54-216ENST00000514901 TEX43Q6ZNM6 134 aa9.33□□□□□ -0.92
NUP54-216ENST00000514901 C2orf88Q9BSF0 95 aa9.33□□□□□ -0.92
NUP54-216ENST00000514901 VCX2Q9H322 139 aa9.33□□□□□ -0.92
NUP54-216ENST00000514901 hDV102S1A0JD36 115 aa9.32□□□□□ -0.92
NUP54-216ENST00000514901 COLCA2A8K830 154 aa9.32□□□□□ -0.92
NUP54-216ENST00000514901 ERASQ7Z444 233 aa9.32□□□□□ -0.92
NUP54-216ENST00000514901 SCGB3A1Q96QR1 104 aa9.32□□□□□ -0.92
NUP54-216ENST00000514901 IGHV1-58A0A0C4DH39 117 aa9.31□□□□□ -0.92
NUP54-216ENST00000514901 COX7A2LO14548 114 aa9.31□□□□□ -0.92
NUP54-216ENST00000514901 CDK2AP2O75956 126 aa9.31□□□□□ -0.92
NUP54-216ENST00000514901 AMELXQ99217 191 aa9.31□□□□□ -0.92
NUP54-216ENST00000514901 TRGC2P03986 189 aa9.3□□□□□ -0.92
NUP54-216ENST00000514901 MALP21145 153 aa9.3□□□□□ -0.92
NUP54-216ENST00000514901 KRTAP10-1P60331 282 aa9.3□□□□□ -0.92
NUP54-216ENST00000514901 CNBPP62633 177 aaKnown RBP9.3□□□□□ -0.92
NUP54-216ENST00000514901 C15orf56Q8N910 161 aa9.3□□□□□ -0.92
NUP54-216ENST00000514901 GVQW2A0A096LPI5 108 aaPredicted RBP9.29□□□□□ -0.92
NUP54-216ENST00000514901 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.29□□□□□ -0.92
NUP54-216ENST00000514901 APOMO95445 188 aa9.29□□□□□ -0.92
NUP54-216ENST00000514901 IGHV3OR16-9A0A0B4J2B5 98 aa9.28□□□□□ -0.92
NUP54-216ENST00000514901 UBE2D1P51668 147 aa9.28□□□□□ -0.92
NUP54-216ENST00000514901 SEC11AP67812 179 aa9.28□□□□□ -0.92
NUP54-216ENST00000514901 CHCHD1Q96BP2 118 aaKnown RBP9.28□□□□□ -0.92
NUP54-216ENST00000514901 URB1-AS1Q96HZ7 61 aa9.28□□□□□ -0.92
NUP54-216ENST00000514901 HBDP02042 147 aa9.27□□□□□ -0.93
NUP54-216ENST00000514901 S100A1P23297 94 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 108.6 ms