RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 ZNF25P17030 456 aaPredicted RBP13.15□□□□□ -0.3
USP39-218ENST00000493829 S100A2P29034 98 aa13.15□□□□□ -0.3
USP39-218ENST00000493829 LINC01556Q5JQF7 62 aa13.15□□□□□ -0.3
USP39-218ENST00000493829 ZC2HC1BQ5TFG8 222 aa13.15□□□□□ -0.3
USP39-218ENST00000493829 LGALS9CQ6DKI2 356 aa13.15□□□□□ -0.3
USP39-218ENST00000493829 ERASQ7Z444 233 aa13.15□□□□□ -0.3
USP39-218ENST00000493829 TIMM21Q9BVV7 248 aa13.15□□□□□ -0.3
USP39-218ENST00000493829 IGLV4-3A0A075B6K6 122 aa13.15□□□□□ -0.31
USP39-218ENST00000493829 SMAGPQ0VAQ4 97 aa13.15□□□□□ -0.31
USP39-218ENST00000493829 KLK12Q9UKR0 248 aa13.15□□□□□ -0.31
USP39-218ENST00000493829 FAM104AQ969W3 186 aa13.14□□□□□ -0.31
USP39-218ENST00000493829 TIMM17AQ99595 171 aa13.14□□□□□ -0.31
USP39-218ENST00000493829 A0A1B0GUV1 79 aa13.13□□□□□ -0.31
USP39-218ENST00000493829 H0Y8G0 127 aa13.13□□□□□ -0.31
USP39-218ENST00000493829 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.13□□□□□ -0.31
USP39-218ENST00000493829 LINC00269Q8N2A0 174 aa13.13□□□□□ -0.31
USP39-218ENST00000493829 ZNF664Q8N3J9 261 aa13.13□□□□□ -0.31
USP39-218ENST00000493829 PYGO1Q9Y3Y4 419 aa13.13□□□□□ -0.31
USP39-218ENST00000493829 DNAH1Q9P2D7 4330 aa13.13□□□□□ -0.31
USP39-218ENST00000493829 TMEM141Q96I45 108 aa13.12□□□□□ -0.31
USP39-218ENST00000493829 CDC42SE2Q9NRR3 84 aa13.12□□□□□ -0.31
USP39-218ENST00000493829 LINC01549A6NIU2 74 aa13.12□□□□□ -0.31
USP39-218ENST00000493829 IFITM10A6NMD0 228 aa13.12□□□□□ -0.31
USP39-218ENST00000493829 ATP5LO75964 103 aa13.12□□□□□ -0.31
USP39-218ENST00000493829 Q6ZN92 141 aa13.12□□□□□ -0.31
USP39-218ENST00000493829 IFI27L1Q96BM0 104 aa13.12□□□□□ -0.31
USP39-218ENST00000493829 HIST1H2BLQ99880 126 aa13.12□□□□□ -0.31
USP39-218ENST00000493829 HSPB8Q9UJY1 196 aa13.12□□□□□ -0.31
USP39-218ENST00000493829 CSDC2Q9Y534 153 aaKnown RBP13.12□□□□□ -0.31
USP39-218ENST00000493829 ALMS1Q8TCU4 4167 aa13.11□□□□□ -0.31
USP39-218ENST00000493829 BAALCQ8WXS3 180 aa13.11□□□□□ -0.31
USP39-218ENST00000493829 VPS13DQ5THJ4 4388 aa13.1□□□□□ -0.31
USP39-218ENST00000493829 MRPS36P82909 103 aaKnown RBP13.1□□□□□ -0.31
USP39-218ENST00000493829 UBE2WQ96B02 151 aa13.1□□□□□ -0.31
USP39-218ENST00000493829 KRTAP1-5Q9BYS1 174 aa13.1□□□□□ -0.31
USP39-218ENST00000493829 M0R2N4 97 aa13.09□□□□□ -0.31
USP39-218ENST00000493829 TEX43Q6ZNM6 134 aa13.09□□□□□ -0.31
USP39-218ENST00000493829 VCX2Q9H322 139 aa13.09□□□□□ -0.31
USP39-218ENST00000493829 CRPP02741 224 aa13.08□□□□□ -0.31
USP39-218ENST00000493829 PRSS1P07477 247 aa13.08□□□□□ -0.31
USP39-218ENST00000493829 REG3AQ06141 175 aa13.08□□□□□ -0.31
USP39-218ENST00000493829 Q9HAA7 133 aa13.08□□□□□ -0.31
USP39-218ENST00000493829 TRAV13-1A0A0B4J241 112 aa13.08□□□□□ -0.32
USP39-218ENST00000493829 KRTDAPP60985 99 aa13.07□□□□□ -0.32
USP39-218ENST00000493829 IGLV10-54A0A075B6I4 117 aa13.06□□□□□ -0.32
USP39-218ENST00000493829 TRAV9-2A0A087WT02 112 aa13.06□□□□□ -0.32
USP39-218ENST00000493829 NBDYA0A0U1RRE5 68 aa13.06□□□□□ -0.32
USP39-218ENST00000493829 PAPPA-AS1Q5QFB9 102 aa13.06□□□□□ -0.32
USP39-218ENST00000493829 ENHOQ6UWT2 76 aa13.06□□□□□ -0.32
USP39-218ENST00000493829 C2orf88Q9BSF0 95 aa13.06□□□□□ -0.32
USP39-218ENST00000493829 NPSP0C0P6 89 aa13.05□□□□□ -0.32
USP39-218ENST00000493829 C10orf126Q8N4M7 172 aa13.05□□□□□ -0.32
USP39-218ENST00000493829 AMELXQ99217 191 aa13.05□□□□□ -0.32
USP39-218ENST00000493829 MAP1LC3CQ9BXW4 147 aa13.05□□□□□ -0.32
USP39-218ENST00000493829 PMVKQ15126 192 aa13.05□□□□□ -0.32
USP39-218ENST00000493829 PACRGQ96M98 296 aaPredicted RBP13.05□□□□□ -0.32
USP39-218ENST00000493829 CST9LQ9H4G1 147 aa13.05□□□□□ -0.32
USP39-218ENST00000493829 PRSS29PA6NIE9 313 aa13.04□□□□□ -0.32
USP39-218ENST00000493829 TTC32Q5I0X7 151 aa13.04□□□□□ -0.32
USP39-218ENST00000493829 PRR34Q9NV39 138 aa13.04□□□□□ -0.32
USP39-218ENST00000493829 IBA57-AS1B1ANH7 110 aa13.03□□□□□ -0.32
USP39-218ENST00000493829 C3orf79P0CE67 100 aa13.03□□□□□ -0.32
USP39-218ENST00000493829 PMCHL2Q9BQD1 86 aa13.03□□□□□ -0.32
USP39-218ENST00000493829 LINC00959A0A1B0GUT2 108 aa13.02□□□□□ -0.32
USP39-218ENST00000493829 SPATA12Q7Z6I5 190 aa13.02□□□□□ -0.32
USP39-218ENST00000493829 SYS1-DBNDD2H3BUS1 97 aa13.02□□□□□ -0.33
USP39-218ENST00000493829 OR10D4PQ8NGN7 298 aa13.02□□□□□ -0.33
USP39-218ENST00000493829 LCE6AA0A183 80 aa13.01□□□□□ -0.33
USP39-218ENST00000493829 XCL1P47992 114 aa13.01□□□□□ -0.33
USP39-218ENST00000493829 UBE2D1P51668 147 aa13.01□□□□□ -0.33
USP39-218ENST00000493829 CHTOPQ9Y3Y2 248 aaKnown RBP13□□□□□ -0.33
USP39-218ENST00000493829 IGKV2D-24A0A075B6R9 120 aa12.99□□□□□ -0.33
USP39-218ENST00000493829 A0A0J9YXV3 536 aa12.99□□□□□ -0.33
USP39-218ENST00000493829 CCL25O15444 150 aa12.99□□□□□ -0.33
USP39-218ENST00000493829 SS18Q15532 418 aa12.99□□□□□ -0.33
USP39-218ENST00000493829 MIAQ16674 131 aa12.99□□□□□ -0.33
USP39-218ENST00000493829 TRAV8-3A0A0A6YYJ7 113 aa12.99□□□□□ -0.33
USP39-218ENST00000493829 K7EP13 123 aa12.99□□□□□ -0.33
USP39-218ENST00000493829 ODF1Q14990 250 aa12.99□□□□□ -0.33
USP39-218ENST00000493829 CHCHD10Q8WYQ3 142 aaPredicted RBP12.99□□□□□ -0.33
USP39-218ENST00000493829 MRPL35Q9NZE8 188 aaKnown RBP12.99□□□□□ -0.33
USP39-218ENST00000493829 TRAV12-1A0A0B4J245 112 aa12.98□□□□□ -0.33
USP39-218ENST00000493829 C1orf43Q9BWL3 253 aa12.98□□□□□ -0.33
USP39-218ENST00000493829 IGLV4-69A0A075B6H9 119 aa12.97□□□□□ -0.33
USP39-218ENST00000493829 LINC00242Q5T6M2 205 aa12.97□□□□□ -0.33
USP39-218ENST00000493829 Q6ZR54 194 aa12.96□□□□□ -0.33
USP39-218ENST00000493829 CHAC1Q9BUX1 264 aa12.96□□□□□ -0.33
USP39-218ENST00000493829 GAGE12HA6NDE8 117 aa12.96□□□□□ -0.34
USP39-218ENST00000493829 COX6A2Q02221 97 aa12.96□□□□□ -0.34
USP39-218ENST00000493829 PET117Q6UWS5 81 aa12.96□□□□□ -0.34
USP39-218ENST00000493829 F8VRH5 84 aa12.95□□□□□ -0.34
USP39-218ENST00000493829 GEMIN7Q9H840 131 aaKnown RBP12.95□□□□□ -0.34
USP39-218ENST00000493829 TRAV8-4A0A0B4J246 113 aa12.94□□□□□ -0.34
USP39-218ENST00000493829 C11orf86A6NJI1 115 aa12.94□□□□□ -0.34
USP39-218ENST00000493829 IGLC3P0DOY3 106 aa12.93□□□□□ -0.34
USP39-218ENST00000493829 AKR1D1P51857 326 aa12.93□□□□□ -0.34
USP39-218ENST00000493829 LINC01545Q5VT33 79 aa12.93□□□□□ -0.34
USP39-218ENST00000493829 LINC00469Q8N7U9 141 aa12.93□□□□□ -0.34
USP39-218ENST00000493829 RMI2Q96E14 147 aa12.93□□□□□ -0.34
USP39-218ENST00000493829 KMT2AQ03164 3969 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms