RNA–Protein interactions for RNA: ENST00000490278.1

CD46-216, Transcript of CD46 molecule, humanhuman

TSL 2

Gene CD46, Length 747 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-216ENST00000490278 SPEF2Q9C093 1822 aa-0.4□□□□□ -2.47
CD46-216ENST00000490278 TRAV13-2A0A0B4J235 113 aa-0.4□□□□□ -2.47
CD46-216ENST00000490278 PIGBOS1A0A0B4J2F0 54 aa-0.4□□□□□ -2.47
CD46-216ENST00000490278 HIST1H1DP16402 221 aaKnown RBP-0.4□□□□□ -2.47
CD46-216ENST00000490278 S100A3P33764 101 aa-0.4□□□□□ -2.47
CD46-216ENST00000490278 Q5VSD8 79 aa-0.4□□□□□ -2.47
CD46-216ENST00000490278 AQP10Q96PS8 301 aa-0.4□□□□□ -2.47
CD46-216ENST00000490278 PDCD10Q9BUL8 212 aa-0.4□□□□□ -2.47
CD46-216ENST00000490278 PAIP2BQ9ULR5 123 aaKnown RBP-0.4□□□□□ -2.47
CD46-216ENST00000490278 EPG5Q9HCE0 2579 aa-0.4□□□□□ -2.47
CD46-216ENST00000490278 DNAJC13O75165 2243 aa-0.4□□□□□ -2.47
CD46-216ENST00000490278 VPS13DQ5THJ4 4388 aa-0.4□□□□□ -2.47
CD46-216ENST00000490278 GOLGA4Q13439 2230 aaKnown RBP-0.41□□□□□ -2.47
CD46-216ENST00000490278 PCLOQ9Y6V0 5065 aa-0.41□□□□□ -2.47
CD46-216ENST00000490278 M0R135 149 aa-0.41□□□□□ -2.48
CD46-216ENST00000490278 ARPC4P59998 168 aa-0.41□□□□□ -2.48
CD46-216ENST00000490278 KLK9Q2XQG4 91 aa-0.41□□□□□ -2.48
CD46-216ENST00000490278 C10orf128Q5T292 105 aa-0.41□□□□□ -2.48
CD46-216ENST00000490278 SMIM4Q8WVI0 70 aa-0.41□□□□□ -2.48
CD46-216ENST00000490278 COPS9Q8WXC6 57 aa-0.41□□□□□ -2.48
CD46-216ENST00000490278 SETD2Q9BYW2 2564 aaPredicted RBP-0.41□□□□□ -2.48
CD46-216ENST00000490278 C10orf71Q711Q0 1435 aa-0.41□□□□□ -2.48
CD46-216ENST00000490278 PRDM2Q13029 1718 aa-0.41□□□□□ -2.48
CD46-216ENST00000490278 MRC1P22897 1456 aa-0.41□□□□□ -2.48
CD46-216ENST00000490278 HTTP42858 3142 aa-0.42□□□□□ -2.48
CD46-216ENST00000490278 DNAH3Q8TD57 4116 aa-0.42□□□□□ -2.48
CD46-216ENST00000490278 RBM3P98179 157 aaKnown RBP-0.42□□□□□ -2.48
CD46-216ENST00000490278 TSC2P49815 1807 aa-0.43□□□□□ -2.48
CD46-216ENST00000490278 WNK3Q9BYP7 1800 aa-0.43□□□□□ -2.48
CD46-216ENST00000490278 UBR4Q5T4S7 5183 aa-0.43□□□□□ -2.48
CD46-216ENST00000490278 ERCC6L2Q5T890 1561 aa-0.43□□□□□ -2.48
CD46-216ENST00000490278 CTXND1A0A1B0GTU2 59 aa-0.43□□□□□ -2.48
CD46-216ENST00000490278 C12orf73Q69YU5 71 aa-0.43□□□□□ -2.48
CD46-216ENST00000490278 AGPAT4-IT1Q9H0P7 198 aa-0.43□□□□□ -2.48
CD46-216ENST00000490278 LENEPQ9Y5L5 61 aa-0.43□□□□□ -2.48
CD46-216ENST00000490278 ZNF236Q9UL36 1845 aa-0.43□□□□□ -2.48
CD46-216ENST00000490278 USP9YO00507 2555 aaPredicted RBP-0.44□□□□□ -2.48
CD46-216ENST00000490278 KDM3BQ7LBC6 1761 aa-0.44□□□□□ -2.48
CD46-216ENST00000490278 TP53AIP1Q9HCN2 124 aa-0.44□□□□□ -2.48
CD46-216ENST00000490278 ZFHX3Q15911 3703 aa-0.44□□□□□ -2.48
CD46-216ENST00000490278 MYH8P13535 1937 aa-0.44□□□□□ -2.48
CD46-216ENST00000490278 LRP6O75581 1613 aa-0.45□□□□□ -2.48
CD46-216ENST00000490278 LAMC1P11047 1609 aa-0.45□□□□□ -2.48
CD46-216ENST00000490278 DOCK1Q14185 1865 aa-0.45□□□□□ -2.48
CD46-216ENST00000490278 CFTRP13569 1480 aa-0.45□□□□□ -2.48
CD46-216ENST00000490278 SPRR1BP22528 89 aa-0.45□□□□□ -2.48
CD46-216ENST00000490278 SPRR2BP35325 72 aa-0.45□□□□□ -2.48
CD46-216ENST00000490278 DCDP81605 110 aaKnown RBP-0.45□□□□□ -2.48
CD46-216ENST00000490278 TTC9CQ8N5M4 171 aa-0.45□□□□□ -2.48
CD46-216ENST00000490278 Q8N8P6 123 aa-0.45□□□□□ -2.48
CD46-216ENST00000490278 PRRC2CQ9Y520 2896 aaKnown RBP-0.45□□□□□ -2.48
CD46-216ENST00000490278 PCNX1Q96RV3 2341 aa-0.46□□□□□ -2.48
CD46-216ENST00000490278 PI4KAP42356 2102 aa-0.46□□□□□ -2.48
CD46-216ENST00000490278 BCL9LQ86UU0 1499 aa-0.46□□□□□ -2.48
CD46-216ENST00000490278 TRBV6-1A0A0K0K1D8 114 aa-0.46□□□□□ -2.48
CD46-216ENST00000490278 KRTAP6-2Q3LI66 62 aa-0.46□□□□□ -2.48
CD46-216ENST00000490278 LSM10Q969L4 123 aaKnown RBP-0.46□□□□□ -2.48
CD46-216ENST00000490278 RERGLQ9H628 205 aa-0.46□□□□□ -2.48
CD46-216ENST00000490278 V9GYH0 126 aa-0.46□□□□□ -2.48
CD46-216ENST00000490278 HYDINQ4G0P3 5121 aa-0.46□□□□□ -2.48
CD46-216ENST00000490278 REV3LO60673 3130 aa-0.46□□□□□ -2.48
CD46-216ENST00000490278 DNAH9Q9NYC9 4486 aa-0.46□□□□□ -2.48
CD46-216ENST00000490278 LYSTQ99698 3801 aa-0.46□□□□□ -2.48
CD46-216ENST00000490278 DOPEY1Q5JWR5 2465 aa-0.46□□□□□ -2.48
CD46-216ENST00000490278 PPIP5K1Q6PFW1 1433 aa-0.47□□□□□ -2.48
CD46-216ENST00000490278 PKD1P98161 4303 aa-0.47□□□□□ -2.48
CD46-216ENST00000490278 I3L2K1 104 aa-0.47□□□□□ -2.48
CD46-216ENST00000490278 SERP1Q9Y6X1 66 aa-0.47□□□□□ -2.48
CD46-216ENST00000490278 NBASA2RRP1 2371 aa-0.47□□□□□ -2.49
CD46-216ENST00000490278 LRRC37A2A6NM11 1700 aa-0.47□□□□□ -2.49
CD46-216ENST00000490278 ARAP2Q8WZ64 1704 aa-0.47□□□□□ -2.49
CD46-216ENST00000490278 EPPK1P58107 5090 aaKnown RBP-0.47□□□□□ -2.49
CD46-216ENST00000490278 TACC2O95359 2948 aa-0.48□□□□□ -2.49
CD46-216ENST00000490278 BICRAQ9NZM4 1560 aa-0.48□□□□□ -2.49
CD46-216ENST00000490278 M0R2T5 61 aa-0.48□□□□□ -2.49
CD46-216ENST00000490278 TNFP01375 233 aa-0.48□□□□□ -2.49
CD46-216ENST00000490278 TMEM170BQ5T4T1 132 aa-0.48□□□□□ -2.49
CD46-216ENST00000490278 Q6AWC8 147 aa-0.48□□□□□ -2.49
CD46-216ENST00000490278 Q6JHZ5 121 aa-0.48□□□□□ -2.49
CD46-216ENST00000490278 SNRNP25Q9BV90 132 aaKnown RBP-0.48□□□□□ -2.49
CD46-216ENST00000490278 SPG11Q96JI7 2443 aa-0.48□□□□□ -2.49
CD46-216ENST00000490278 CUBNO60494 3623 aa-0.49□□□□□ -2.49
CD46-216ENST00000490278 HECTD1Q9ULT8 2610 aa-0.49□□□□□ -2.49
CD46-216ENST00000490278 PKHD1L1Q86WI1 4243 aa-0.49□□□□□ -2.49
CD46-216ENST00000490278 NEBP20929 6669 aa-0.49□□□□□ -2.49
CD46-216ENST00000490278 PATJQ8NI35 1801 aa-0.49□□□□□ -2.49
CD46-216ENST00000490278 RYR1P21817 5038 aa-0.49□□□□□ -2.49
CD46-216ENST00000490278 SELENOWP63302 87 aa-0.49□□□□□ -2.49
CD46-216ENST00000490278 COX17Q14061 63 aa-0.49□□□□□ -2.49
CD46-216ENST00000490278 PIGYQ3MUY2 71 aa-0.49□□□□□ -2.49
CD46-216ENST00000490278 DEFB105AQ8NG35 78 aa-0.49□□□□□ -2.49
CD46-216ENST00000490278 TSLPQ969D9 159 aa-0.49□□□□□ -2.49
CD46-216ENST00000490278 ARL11Q969Q4 196 aa-0.49□□□□□ -2.49
CD46-216ENST00000490278 AMELXQ99217 191 aa-0.49□□□□□ -2.49
CD46-216ENST00000490278 APLNQ9ULZ1 77 aa-0.49□□□□□ -2.49
CD46-216ENST00000490278 SPTBN4Q9H254 2564 aa-0.49□□□□□ -2.49
CD46-216ENST00000490278 FAT3Q8TDW7 4589 aa-0.49□□□□□ -2.49
CD46-216ENST00000490278 PAPPAQ13219 1627 aa-0.49□□□□□ -2.49
CD46-216ENST00000490278 MUC17Q685J3 4493 aa-0.5□□□□□ -2.49
CD46-216ENST00000490278 FAM25AB3EWG3 89 aa-0.5□□□□□ -2.49
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms