RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 S100A6P06703 90 aa9.41□□□□□ -0.9
C9orf3-221ENST00000489562 TMEM141Q96I45 108 aa9.41□□□□□ -0.9
C9orf3-221ENST00000489562 IGIPA6NJ69 53 aa9.4□□□□□ -0.9
C9orf3-221ENST00000489562 ATP5LO75964 103 aa9.4□□□□□ -0.9
C9orf3-221ENST00000489562 PMCHL1Q16048 86 aa9.4□□□□□ -0.9
C9orf3-221ENST00000489562 PDZD11Q5EBL8 140 aa9.4□□□□□ -0.9
C9orf3-221ENST00000489562 Q6ZN92 141 aa9.4□□□□□ -0.9
C9orf3-221ENST00000489562 ZNF664Q8N3J9 261 aa9.4□□□□□ -0.9
C9orf3-221ENST00000489562 Q8N3U1 123 aa9.4□□□□□ -0.9
C9orf3-221ENST00000489562 CDC42SE2Q9NRR3 84 aa9.4□□□□□ -0.9
C9orf3-221ENST00000489562 KLK12Q9UKR0 248 aa9.4□□□□□ -0.9
C9orf3-221ENST00000489562 IBA57-AS1B1ANH7 110 aa9.39□□□□□ -0.91
C9orf3-221ENST00000489562 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.39□□□□□ -0.91
C9orf3-221ENST00000489562 NUPR1O60356 82 aa9.39□□□□□ -0.91
C9orf3-221ENST00000489562 CRPP02741 224 aa9.39□□□□□ -0.91
C9orf3-221ENST00000489562 FAM19A2Q8N3H0 131 aa9.39□□□□□ -0.91
C9orf3-221ENST00000489562 PACRGQ96M98 296 aaPredicted RBP9.39□□□□□ -0.91
C9orf3-221ENST00000489562 PRR34Q9NV39 138 aa9.39□□□□□ -0.91
C9orf3-221ENST00000489562 IGLV4-3A0A075B6K6 122 aa9.38□□□□□ -0.91
C9orf3-221ENST00000489562 TRAV8-3A0A0A6YYJ7 113 aa9.38□□□□□ -0.91
C9orf3-221ENST00000489562 LEPROTL1O95214 131 aa9.38□□□□□ -0.91
C9orf3-221ENST00000489562 Q6ZUT4 128 aa9.38□□□□□ -0.91
C9orf3-221ENST00000489562 LINC00269Q8N2A0 174 aa9.38□□□□□ -0.91
C9orf3-221ENST00000489562 REG3AQ06141 175 aa9.37□□□□□ -0.91
C9orf3-221ENST00000489562 MIAQ16674 131 aa9.37□□□□□ -0.91
C9orf3-221ENST00000489562 TEX43Q6ZNM6 134 aa9.37□□□□□ -0.91
C9orf3-221ENST00000489562 Q6ZR54 194 aa9.37□□□□□ -0.91
C9orf3-221ENST00000489562 C2orf88Q9BSF0 95 aa9.37□□□□□ -0.91
C9orf3-221ENST00000489562 HSPB8Q9UJY1 196 aa9.37□□□□□ -0.91
C9orf3-221ENST00000489562 TRAV8-4A0A0B4J246 113 aa9.36□□□□□ -0.91
C9orf3-221ENST00000489562 CCL25O15444 150 aa9.36□□□□□ -0.91
C9orf3-221ENST00000489562 FAM104AQ969W3 186 aa9.36□□□□□ -0.91
C9orf3-221ENST00000489562 UBE2WQ96B02 151 aa9.36□□□□□ -0.91
C9orf3-221ENST00000489562 RMI2Q96E14 147 aa9.36□□□□□ -0.91
C9orf3-221ENST00000489562 AMELXQ99217 191 aa9.36□□□□□ -0.91
C9orf3-221ENST00000489562 KRTAP1-5Q9BYS1 174 aa9.36□□□□□ -0.91
C9orf3-221ENST00000489562 VCX2Q9H322 139 aa9.36□□□□□ -0.91
C9orf3-221ENST00000489562 ENHOQ6UWT2 76 aa9.35□□□□□ -0.91
C9orf3-221ENST00000489562 NFE4Q86UQ8 179 aa9.35□□□□□ -0.91
C9orf3-221ENST00000489562 IFI27L1Q96BM0 104 aa9.35□□□□□ -0.91
C9orf3-221ENST00000489562 OPRPNQ99935 248 aaPredicted RBP9.35□□□□□ -0.91
C9orf3-221ENST00000489562 ALMS1Q8TCU4 4167 aa9.34□□□□□ -0.91
C9orf3-221ENST00000489562 IFITM10A6NMD0 228 aa9.34□□□□□ -0.91
C9orf3-221ENST00000489562 S100A2P29034 98 aa9.34□□□□□ -0.91
C9orf3-221ENST00000489562 CLPSL2Q6UWE3 100 aa9.34□□□□□ -0.91
C9orf3-221ENST00000489562 COX11Q9Y6N1 276 aa9.34□□□□□ -0.91
C9orf3-221ENST00000489562 LINC00959A0A1B0GUT2 108 aa9.33□□□□□ -0.92
C9orf3-221ENST00000489562 M0R2N4 97 aa9.33□□□□□ -0.92
C9orf3-221ENST00000489562 FABP4P15090 132 aa9.33□□□□□ -0.92
C9orf3-221ENST00000489562 PMVKQ15126 192 aa9.33□□□□□ -0.92
C9orf3-221ENST00000489562 SS18Q15532 418 aa9.33□□□□□ -0.92
C9orf3-221ENST00000489562 RNASE13Q5GAN3 156 aaKnown RBP9.33□□□□□ -0.92
C9orf3-221ENST00000489562 LINC00173Q6ZV60 143 aa9.33□□□□□ -0.92
C9orf3-221ENST00000489562 HIST3H2BBQ8N257 126 aa9.33□□□□□ -0.92
C9orf3-221ENST00000489562 BAALCQ8WXS3 180 aa9.33□□□□□ -0.92
C9orf3-221ENST00000489562 VPS13DQ5THJ4 4388 aa9.33□□□□□ -0.92
C9orf3-221ENST00000489562 IGKV3OR2-268A0A0C4DH90 116 aa9.32□□□□□ -0.92
C9orf3-221ENST00000489562 C5orf52A6NGY3 159 aa9.32□□□□□ -0.92
C9orf3-221ENST00000489562 PRSS1P07477 247 aa9.32□□□□□ -0.92
C9orf3-221ENST00000489562 SNRPEP62304 92 aaKnown RBP9.32□□□□□ -0.92
C9orf3-221ENST00000489562 C1orf43Q9BWL3 253 aa9.32□□□□□ -0.92
C9orf3-221ENST00000489562 TM2D2Q9BX73 214 aa9.32□□□□□ -0.92
C9orf3-221ENST00000489562 Q9HAA7 133 aa9.32□□□□□ -0.92
C9orf3-221ENST00000489562 TMA7Q9Y2S6 64 aaKnown RBP9.32□□□□□ -0.92
C9orf3-221ENST00000489562 TRAV13-1A0A0B4J241 112 aa9.31□□□□□ -0.92
C9orf3-221ENST00000489562 TRAV12-1A0A0B4J245 112 aa9.31□□□□□ -0.92
C9orf3-221ENST00000489562 SEC11AP67812 179 aa9.31□□□□□ -0.92
C9orf3-221ENST00000489562 C6orf223Q8N319 242 aa9.31□□□□□ -0.92
C9orf3-221ENST00000489562 MAP1LC3CQ9BXW4 147 aa9.31□□□□□ -0.92
C9orf3-221ENST00000489562 CST9LQ9H4G1 147 aa9.31□□□□□ -0.92
C9orf3-221ENST00000489562 LYSTQ99698 3801 aa9.3□□□□□ -0.92
C9orf3-221ENST00000489562 IGKV2D-24A0A075B6R9 120 aa9.3□□□□□ -0.92
C9orf3-221ENST00000489562 UBE2D1P51668 147 aa9.3□□□□□ -0.92
C9orf3-221ENST00000489562 C1orf134Q5TEV5 83 aa9.3□□□□□ -0.92
C9orf3-221ENST00000489562 PRSS29PA6NIE9 313 aa9.29□□□□□ -0.92
C9orf3-221ENST00000489562 FAM19A3Q7Z5A8 133 aa9.29□□□□□ -0.92
C9orf3-221ENST00000489562 CHCHD10Q8WYQ3 142 aaPredicted RBP9.29□□□□□ -0.92
C9orf3-221ENST00000489562 HIST1H2BLQ99880 126 aa9.29□□□□□ -0.92
C9orf3-221ENST00000489562 IGLV10-54A0A075B6I4 117 aa9.28□□□□□ -0.92
C9orf3-221ENST00000489562 ZC2HC1BQ5TFG8 222 aa9.28□□□□□ -0.92
C9orf3-221ENST00000489562 CD164L2Q6UWJ8 174 aa9.28□□□□□ -0.92
C9orf3-221ENST00000489562 DNAH1Q9P2D7 4330 aa9.27□□□□□ -0.93
C9orf3-221ENST00000489562 XCL1P47992 114 aa9.27□□□□□ -0.93
C9orf3-221ENST00000489562 HERVK_113P63121 156 aa9.27□□□□□ -0.93
C9orf3-221ENST00000489562 LINC00242Q5T6M2 205 aa9.27□□□□□ -0.93
C9orf3-221ENST00000489562 SPATA12Q7Z6I5 190 aa9.27□□□□□ -0.93
C9orf3-221ENST00000489562 TINCRA0A1B0GVN0 87 aa9.26□□□□□ -0.93
C9orf3-221ENST00000489562 F8VRH5 84 aa9.26□□□□□ -0.93
C9orf3-221ENST00000489562 SYS1-DBNDD2H3BUS1 97 aa9.26□□□□□ -0.93
C9orf3-221ENST00000489562 PSCAO43653 123 aa9.26□□□□□ -0.93
C9orf3-221ENST00000489562 KRTAP26-1Q6PEX3 210 aa9.26□□□□□ -0.93
C9orf3-221ENST00000489562 PET117Q6UWS5 81 aa9.26□□□□□ -0.93
C9orf3-221ENST00000489562 Q6ZRN7 208 aaPredicted RBP9.26□□□□□ -0.93
C9orf3-221ENST00000489562 GEMIN7Q9H840 131 aaKnown RBP9.26□□□□□ -0.93
C9orf3-221ENST00000489562 CHTOPQ9Y3Y2 248 aaKnown RBP9.26□□□□□ -0.93
C9orf3-221ENST00000489562 A0A0J9YXV3 536 aa9.25□□□□□ -0.93
C9orf3-221ENST00000489562 GAGE12HA6NDE8 117 aa9.25□□□□□ -0.93
C9orf3-221ENST00000489562 H0Y8G0 127 aa9.25□□□□□ -0.93
C9orf3-221ENST00000489562 IGLC3P0DOY3 106 aa9.25□□□□□ -0.93
C9orf3-221ENST00000489562 FOXI1Q12951 378 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 91.4 ms