RNA–Protein interactions for RNA: ENST00000476183.2

LIME1-204, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5

Gene LIME1, Length 809 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-204ENST00000476183 LINC00862A6NCI5 91 aa13.64□□□□□ -0.23
LIME1-204ENST00000476183 CKS2P33552 79 aa13.64□□□□□ -0.23
LIME1-204ENST00000476183 CNBPP62633 177 aaKnown RBP13.64□□□□□ -0.23
LIME1-204ENST00000476183 IFITM2Q01629 132 aa13.64□□□□□ -0.23
LIME1-204ENST00000476183 LINC00528Q8N1L1 170 aa13.64□□□□□ -0.23
LIME1-204ENST00000476183 TRBV24-1A0A075B6N3 115 aa13.63□□□□□ -0.23
LIME1-204ENST00000476183 PPP1R2P9O14990 202 aa13.63□□□□□ -0.23
LIME1-204ENST00000476183 FCER1GP30273 86 aa13.63□□□□□ -0.23
LIME1-204ENST00000476183 CDC42SE2Q9NRR3 84 aa13.63□□□□□ -0.23
LIME1-204ENST00000476183 D6R8Y8 96 aa13.62□□□□□ -0.23
LIME1-204ENST00000476183 S100A8P05109 93 aa13.62□□□□□ -0.23
LIME1-204ENST00000476183 PNRC1Q12796 327 aaPredicted RBP13.62□□□□□ -0.23
LIME1-204ENST00000476183 FOXI1Q12951 378 aa13.62□□□□□ -0.23
LIME1-204ENST00000476183 C20orf78Q9BR46 151 aa13.62□□□□□ -0.23
LIME1-204ENST00000476183 LINC00959A0A1B0GUT2 108 aa13.61□□□□□ -0.23
LIME1-204ENST00000476183 F8W036 122 aa13.61□□□□□ -0.23
LIME1-204ENST00000476183 TNFRSF6BO95407 300 aa13.61□□□□□ -0.23
LIME1-204ENST00000476183 SDIM1Q6ZPB5 146 aa13.61□□□□□ -0.23
LIME1-204ENST00000476183 KIR2DL4Q99706 377 aa13.61□□□□□ -0.23
LIME1-204ENST00000476183 PANO1I0J062 215 aa13.6□□□□□ -0.23
LIME1-204ENST00000476183 RPL32P62910 135 aaKnown RBP13.6□□□□□ -0.23
LIME1-204ENST00000476183 ATP5L2Q7Z4Y8 100 aa13.6□□□□□ -0.23
LIME1-204ENST00000476183 ZNF664Q8N3J9 261 aa13.6□□□□□ -0.23
LIME1-204ENST00000476183 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.6□□□□□ -0.23
LIME1-204ENST00000476183 NPYP01303 97 aa13.59□□□□□ -0.23
LIME1-204ENST00000476183 XCL1P47992 114 aa13.59□□□□□ -0.23
LIME1-204ENST00000476183 AP5S1Q9NUS5 200 aa13.59□□□□□ -0.23
LIME1-204ENST00000476183 UBE2D4Q9Y2X8 147 aa13.59□□□□□ -0.23
LIME1-204ENST00000476183 CCL25O15444 150 aa13.58□□□□□ -0.24
LIME1-204ENST00000476183 MT-ND4LP03901 98 aa13.58□□□□□ -0.24
LIME1-204ENST00000476183 HIGD2BQ4VC39 106 aa13.58□□□□□ -0.24
LIME1-204ENST00000476183 CFAP161Q6P656 301 aa13.58□□□□□ -0.24
LIME1-204ENST00000476183 ANAPC16Q96DE5 110 aa13.58□□□□□ -0.24
LIME1-204ENST00000476183 SMIM2Q9BVW6 85 aa13.58□□□□□ -0.24
LIME1-204ENST00000476183 CSDC2Q9Y534 153 aaKnown RBP13.57□□□□□ -0.24
LIME1-204ENST00000476183 PLA2G1BP04054 148 aaKnown RBP13.56□□□□□ -0.24
LIME1-204ENST00000476183 ADCYAP1P18509 176 aa13.56□□□□□ -0.24
LIME1-204ENST00000476183 RNASE13Q5GAN3 156 aaKnown RBP13.56□□□□□ -0.24
LIME1-204ENST00000476183 DMBT1Q9UGM3 2413 aaPredicted RBP13.55□□□□□ -0.24
LIME1-204ENST00000476183 HERC1Q15751 4861 aa13.55□□□□□ -0.24
LIME1-204ENST00000476183 GVQW2A0A096LPI5 108 aaPredicted RBP13.55□□□□□ -0.24
LIME1-204ENST00000476183 PHOX2AO14813 284 aa13.55□□□□□ -0.24
LIME1-204ENST00000476183 PPBPP02775 128 aa13.55□□□□□ -0.24
LIME1-204ENST00000476183 SS18Q15532 418 aa13.55□□□□□ -0.24
LIME1-204ENST00000476183 IGHV3-64A0A075B6Q5 118 aa13.54□□□□□ -0.24
LIME1-204ENST00000476183 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.54□□□□□ -0.24
LIME1-204ENST00000476183 KRTAP10-4P60372 401 aaPredicted RBP13.54□□□□□ -0.24
LIME1-204ENST00000476183 RPL39P62891 51 aaKnown RBP13.54□□□□□ -0.24
LIME1-204ENST00000476183 TMEM136Q6ZRR5 245 aa13.54□□□□□ -0.24
LIME1-204ENST00000476183 ORMDL3Q8N138 153 aa13.54□□□□□ -0.24
LIME1-204ENST00000476183 TCAPO15273 167 aa13.53□□□□□ -0.24
LIME1-204ENST00000476183 CD164L2Q6UWJ8 174 aa13.53□□□□□ -0.24
LIME1-204ENST00000476183 Q6ZUT4 128 aa13.53□□□□□ -0.24
LIME1-204ENST00000476183 TIMM21Q9BVV7 248 aa13.53□□□□□ -0.24
LIME1-204ENST00000476183 TMEM218A2RU14 115 aa13.52□□□□□ -0.25
LIME1-204ENST00000476183 SMAGPQ0VAQ4 97 aa13.52□□□□□ -0.25
LIME1-204ENST00000476183 CIRBPQ14011 172 aaKnown RBP13.52□□□□□ -0.25
LIME1-204ENST00000476183 UQCC3Q6UW78 93 aa13.52□□□□□ -0.25
LIME1-204ENST00000476183 FAM104AQ969W3 186 aa13.52□□□□□ -0.25
LIME1-204ENST00000476183 TMEM18Q96B42 140 aa13.52□□□□□ -0.25
LIME1-204ENST00000476183 PRELID3AQ96N28 172 aa13.52□□□□□ -0.25
LIME1-204ENST00000476183 IGHV1-58A0A0C4DH39 117 aa13.5□□□□□ -0.25
LIME1-204ENST00000476183 CHTF8P0CG12 524 aa13.5□□□□□ -0.25
LIME1-204ENST00000476183 LINC00526Q96FQ7 95 aa13.5□□□□□ -0.25
LIME1-204ENST00000476183 TRAV13-1A0A0B4J241 112 aa13.49□□□□□ -0.25
LIME1-204ENST00000476183 C1orf196B1AJZ1 125 aa13.49□□□□□ -0.25
LIME1-204ENST00000476183 PKHD1L1Q86WI1 4243 aa13.49□□□□□ -0.25
LIME1-204ENST00000476183 OPRPNQ99935 248 aaPredicted RBP13.48□□□□□ -0.25
LIME1-204ENST00000476183 COX6A2Q02221 97 aa13.47□□□□□ -0.25
LIME1-204ENST00000476183 PRSS47A8MTI9 375 aa13.46□□□□□ -0.25
LIME1-204ENST00000476183 PRSS3P2Q8NHM4 247 aa13.46□□□□□ -0.25
LIME1-204ENST00000476183 SPACA4Q8TDM5 124 aa13.46□□□□□ -0.25
LIME1-204ENST00000476183 IMMP2LQ96T52 175 aa13.46□□□□□ -0.25
LIME1-204ENST00000476183 SPANXA1Q9NS26 97 aa13.46□□□□□ -0.25
LIME1-204ENST00000476183 LRP1Q07954 4544 aaKnown RBP13.45□□□□□ -0.26
LIME1-204ENST00000476183 LOC389332A0A1B0GUA5 103 aa13.45□□□□□ -0.26
LIME1-204ENST00000476183 COMMD7Q86VX2 200 aa13.45□□□□□ -0.26
LIME1-204ENST00000476183 LAMTOR2Q9Y2Q5 125 aa13.45□□□□□ -0.26
LIME1-204ENST00000476183 A0A087WYN8 130 aa13.44□□□□□ -0.26
LIME1-204ENST00000476183 COX7A2LO14548 114 aa13.44□□□□□ -0.26
LIME1-204ENST00000476183 RAB5AP20339 215 aa13.44□□□□□ -0.26
LIME1-204ENST00000476183 MRPS36P82909 103 aaKnown RBP13.44□□□□□ -0.26
LIME1-204ENST00000476183 SEC11CQ9BY50 192 aa13.44□□□□□ -0.26
LIME1-204ENST00000476183 C5orf38Q86SI9 138 aa13.43□□□□□ -0.26
LIME1-204ENST00000476183 CTDSP1Q9GZU7 261 aa13.43□□□□□ -0.26
LIME1-204ENST00000476183 MAP1LC3AQ9H492 121 aa13.43□□□□□ -0.26
LIME1-204ENST00000476183 FAT3Q8TDW7 4589 aa13.42□□□□□ -0.26
LIME1-204ENST00000476183 RPL37AP61513 92 aaKnown RBP13.42□□□□□ -0.26
LIME1-204ENST00000476183 DPH3Q96FX2 82 aa13.42□□□□□ -0.26
LIME1-204ENST00000476183 ZNF561-AS1K7EIQ3 104 aa13.41□□□□□ -0.26
LIME1-204ENST00000476183 MALP21145 153 aa13.41□□□□□ -0.26
LIME1-204ENST00000476183 Q8N8P6 123 aa13.41□□□□□ -0.26
LIME1-204ENST00000476183 CARD19Q96LW7 228 aa13.41□□□□□ -0.26
LIME1-204ENST00000476183 IGLV4-69A0A075B6H9 119 aa13.4□□□□□ -0.26
LIME1-204ENST00000476183 IGKV2-24A0A0C4DH68 120 aa13.4□□□□□ -0.26
LIME1-204ENST00000476183 A0A096LNI7 61 aa13.39□□□□□ -0.27
LIME1-204ENST00000476183 SYCNQ0VAF6 134 aa13.39□□□□□ -0.27
LIME1-204ENST00000476183 PLAC8Q9NZF1 115 aa13.39□□□□□ -0.27
LIME1-204ENST00000476183 PYGO1Q9Y3Y4 419 aa13.39□□□□□ -0.27
LIME1-204ENST00000476183 IGLV4-3A0A075B6K6 122 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms