RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 GNB1LQ9BYB4 327 aa10.09□□□□□ -0.79
SDC3-203ENST00000471567 CSDC2Q9Y534 153 aaKnown RBP10.09□□□□□ -0.79
SDC3-203ENST00000471567 LECT2O14960 151 aa10.08□□□□□ -0.8
SDC3-203ENST00000471567 MAP1LC3AQ9H492 121 aa10.08□□□□□ -0.8
SDC3-203ENST00000471567 RAB5AP20339 215 aa10.07□□□□□ -0.8
SDC3-203ENST00000471567 C14orf177Q52M58 125 aa10.07□□□□□ -0.8
SDC3-203ENST00000471567 DGAT2L7PQ6IED9 249 aa10.07□□□□□ -0.8
SDC3-203ENST00000471567 TIMM21Q9BVV7 248 aa10.07□□□□□ -0.8
SDC3-203ENST00000471567 CDC42SE2Q9NRR3 84 aa10.07□□□□□ -0.8
SDC3-203ENST00000471567 IGLV10-54A0A075B6I4 117 aa10.06□□□□□ -0.8
SDC3-203ENST00000471567 IGLV5-52A0A0A0MRZ9 124 aa10.06□□□□□ -0.8
SDC3-203ENST00000471567 MT-ND6P03923 174 aa10.06□□□□□ -0.8
SDC3-203ENST00000471567 FUSP35637 526 aaKnown RBP eCLIP10.06□□□□□ -0.85e-7■■□□□ 11.7
SDC3-203ENST00000471567 UBE2D4Q9Y2X8 147 aa10.06□□□□□ -0.8
SDC3-203ENST00000471567 ZNF664Q8N3J9 261 aa10.05□□□□□ -0.8
SDC3-203ENST00000471567 Q8N8P6 123 aa10.05□□□□□ -0.8
SDC3-203ENST00000471567 IGKV3OR2-268A0A0C4DH90 116 aa10.04□□□□□ -0.8
SDC3-203ENST00000471567 LOC389332A0A1B0GUA5 103 aa10.04□□□□□ -0.8
SDC3-203ENST00000471567 USP17L23D6RBM5 183 aa10.04□□□□□ -0.8
SDC3-203ENST00000471567 GCSHP23434 173 aa10.04□□□□□ -0.8
SDC3-203ENST00000471567 NXT2Q9NPJ8 142 aaKnown RBP10.04□□□□□ -0.8
SDC3-203ENST00000471567 K7EMI3 77 aa10.03□□□□□ -0.8
SDC3-203ENST00000471567 CDK2AP2O75956 126 aa10.03□□□□□ -0.8
SDC3-203ENST00000471567 KIAA1644Q3SXP7 199 aa10.03□□□□□ -0.8
SDC3-203ENST00000471567 CHCHD10Q8WYQ3 142 aaPredicted RBP10.03□□□□□ -0.8
SDC3-203ENST00000471567 SPANXA1Q9NS26 97 aa10.03□□□□□ -0.8
SDC3-203ENST00000471567 TGIF2-C20orf24A0A0A6YYL0 155 aa10.02□□□□□ -0.81
SDC3-203ENST00000471567 LINC00959A0A1B0GUT2 108 aa10.02□□□□□ -0.81
SDC3-203ENST00000471567 CCL25O15444 150 aa10.02□□□□□ -0.81
SDC3-203ENST00000471567 RPL39P62891 51 aaKnown RBP10.02□□□□□ -0.81
SDC3-203ENST00000471567 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.01□□□□□ -0.81
SDC3-203ENST00000471567 GAGE12HA6NDE8 117 aa10.01□□□□□ -0.81
SDC3-203ENST00000471567 KRTAP10-1P60331 282 aa10.01□□□□□ -0.81
SDC3-203ENST00000471567 SS18Q15532 418 aa10.01□□□□□ -0.81
SDC3-203ENST00000471567 MRPL18Q9H0U6 180 aaKnown RBP10.01□□□□□ -0.81
SDC3-203ENST00000471567 SMCO4Q9NRQ5 59 aa10.01□□□□□ -0.81
SDC3-203ENST00000471567 LRP1BQ9NZR2 4599 aa10□□□□□ -0.81
SDC3-203ENST00000471567 DNAH5Q8TE73 4624 aa10□□□□□ -0.81
SDC3-203ENST00000471567 MRPS36P82909 103 aaKnown RBP10□□□□□ -0.81
SDC3-203ENST00000471567 FABP9Q0Z7S8 132 aa10□□□□□ -0.81
SDC3-203ENST00000471567 ORMDL2Q53FV1 153 aa10□□□□□ -0.81
SDC3-203ENST00000471567 CFAP161Q6P656 301 aa10□□□□□ -0.81
SDC3-203ENST00000471567 ALKBH7Q9BT30 221 aaPredicted RBP10□□□□□ -0.81
SDC3-203ENST00000471567 PRSS1P07477 247 aa9.99□□□□□ -0.81
SDC3-203ENST00000471567 IFI27P40305 119 aaPredicted RBP9.99□□□□□ -0.81
SDC3-203ENST00000471567 Q6ZUT4 128 aa9.99□□□□□ -0.81
SDC3-203ENST00000471567 PYGO1Q9Y3Y4 419 aa9.99□□□□□ -0.81
SDC3-203ENST00000471567 KIAA1109Q2LD37 5005 aa9.98□□□□□ -0.81
SDC3-203ENST00000471567 C1orf196B1AJZ1 125 aa9.98□□□□□ -0.81
SDC3-203ENST00000471567 G0S2P27469 103 aa9.98□□□□□ -0.81
SDC3-203ENST00000471567 FOXI1Q12951 378 aa9.98□□□□□ -0.81
SDC3-203ENST00000471567 CD164L2Q6UWJ8 174 aa9.98□□□□□ -0.81
SDC3-203ENST00000471567 YPEL4Q96NS1 127 aa9.98□□□□□ -0.81
SDC3-203ENST00000471567 CYSLTR1Q9Y271 337 aa9.98□□□□□ -0.81
SDC3-203ENST00000471567 TRAPPC1Q9Y5R8 145 aa9.98□□□□□ -0.81
SDC3-203ENST00000471567 XCL1P47992 114 aa9.97□□□□□ -0.81
SDC3-203ENST00000471567 PRSS3P2Q8NHM4 247 aa9.97□□□□□ -0.81
SDC3-203ENST00000471567 FAM104AQ969W3 186 aa9.97□□□□□ -0.81
SDC3-203ENST00000471567 RNASE13Q5GAN3 156 aaKnown RBP9.96□□□□□ -0.82
SDC3-203ENST00000471567 C2orf66Q6UXQ4 117 aa9.96□□□□□ -0.82
SDC3-203ENST00000471567 TRAV13-1A0A0B4J241 112 aa9.95□□□□□ -0.82
SDC3-203ENST00000471567 hDV102S1A0JD36 115 aa9.95□□□□□ -0.82
SDC3-203ENST00000471567 LINC01546A6NGU7 62 aa9.95□□□□□ -0.82
SDC3-203ENST00000471567 NPSP0C0P6 89 aa9.95□□□□□ -0.82
SDC3-203ENST00000471567 OPRPNQ99935 248 aaPredicted RBP9.95□□□□□ -0.82
SDC3-203ENST00000471567 CNBPP62633 177 aaKnown RBP9.94□□□□□ -0.82
SDC3-203ENST00000471567 C15orf56Q8N910 161 aa9.94□□□□□ -0.82
SDC3-203ENST00000471567 AP5S1Q9NUS5 200 aa9.94□□□□□ -0.82
SDC3-203ENST00000471567 HERC2O95714 4834 aa9.93□□□□□ -0.82
SDC3-203ENST00000471567 IGLV4-3A0A075B6K6 122 aa9.93□□□□□ -0.82
SDC3-203ENST00000471567 IGHV1-58A0A0C4DH39 117 aa9.93□□□□□ -0.82
SDC3-203ENST00000471567 LINC01549A6NIU2 74 aa9.93□□□□□ -0.82
SDC3-203ENST00000471567 SCO1O75880 301 aa9.93□□□□□ -0.82
SDC3-203ENST00000471567 CBLN2Q8IUK8 224 aa9.93□□□□□ -0.82
SDC3-203ENST00000471567 TMEM141Q96I45 108 aa9.93□□□□□ -0.82
SDC3-203ENST00000471567 RYR1P21817 5038 aa9.92□□□□□ -0.82
SDC3-203ENST00000471567 GVQW2A0A096LPI5 108 aaPredicted RBP9.92□□□□□ -0.82
SDC3-203ENST00000471567 IGIPA6NJ69 53 aa9.92□□□□□ -0.82
SDC3-203ENST00000471567 IFITM10A6NMD0 228 aa9.92□□□□□ -0.82
SDC3-203ENST00000471567 XGP55808 180 aa9.92□□□□□ -0.82
SDC3-203ENST00000471567 FA2HQ7L5A8 372 aa9.92□□□□□ -0.82
SDC3-203ENST00000471567 C9orf163Q8N9P6 203 aa9.92□□□□□ -0.82
SDC3-203ENST00000471567 TOMM6Q96B49 74 aa9.92□□□□□ -0.82
SDC3-203ENST00000471567 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.91□□□□□ -0.82
SDC3-203ENST00000471567 COX7A2LO14548 114 aa9.91□□□□□ -0.82
SDC3-203ENST00000471567 LINC01620Q4KN68 170 aa9.91□□□□□ -0.82
SDC3-203ENST00000471567 Q6ZN92 141 aa9.91□□□□□ -0.82
SDC3-203ENST00000471567 Q6ZSA8 131 aa9.91□□□□□ -0.82
SDC3-203ENST00000471567 PAPPA-AS1Q5QFB9 102 aa9.9□□□□□ -0.82
SDC3-203ENST00000471567 TEX43Q6ZNM6 134 aa9.9□□□□□ -0.82
SDC3-203ENST00000471567 C18orf32Q8TCD1 76 aa9.9□□□□□ -0.82
SDC3-203ENST00000471567 AMELXQ99217 191 aa9.9□□□□□ -0.82
SDC3-203ENST00000471567 TIMM17AQ99595 171 aa9.9□□□□□ -0.82
SDC3-203ENST00000471567 FAM30AQ9NZY2 134 aa9.9□□□□□ -0.82
SDC3-203ENST00000471567 APOBP04114 4563 aaKnown RBP9.89□□□□□ -0.83
SDC3-203ENST00000471567 SLPIP03973 132 aa9.89□□□□□ -0.83
SDC3-203ENST00000471567 MALP21145 153 aa9.89□□□□□ -0.83
SDC3-203ENST00000471567 HIGD2BQ4VC39 106 aa9.89□□□□□ -0.83
SDC3-203ENST00000471567 ERASQ7Z444 233 aa9.89□□□□□ -0.83
SDC3-203ENST00000471567 C2orf88Q9BSF0 95 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms