RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 DNAJC9-AS1A6NH13 148 aa10.86□□□□□ -0.67
PTPRU-204ENST00000428026 TRBV30A0A0K0K1B3 111 aa10.85□□□□□ -0.67
PTPRU-204ENST00000428026 EIF4EBP1Q13541 118 aaPredicted RBP10.85□□□□□ -0.67
PTPRU-204ENST00000428026 TRBV10-1A0A0K0K1A3 114 aa10.85□□□□□ -0.67
PTPRU-204ENST00000428026 A0A096LNI7 61 aa10.84□□□□□ -0.67
PTPRU-204ENST00000428026 SNURFQ9Y675 71 aa10.84□□□□□ -0.67
PTPRU-204ENST00000428026 PROK1P58294 105 aa10.84□□□□□ -0.67
PTPRU-204ENST00000428026 PRRC2AP48634 2157 aaKnown RBP10.84□□□□□ -0.67
PTPRU-204ENST00000428026 CLUHP3Q96NS8 147 aa10.84□□□□□ -0.67
PTPRU-204ENST00000428026 PRO0255Q9UI72 69 aa10.84□□□□□ -0.67
PTPRU-204ENST00000428026 NDUFA7O95182 113 aa10.84□□□□□ -0.67
PTPRU-204ENST00000428026 U3KQK5 164 aa10.84□□□□□ -0.67
PTPRU-204ENST00000428026 CFAP126Q5VTH2 177 aa10.83□□□□□ -0.68
PTPRU-204ENST00000428026 NAV3Q8IVL0 2385 aa10.83□□□□□ -0.68
PTPRU-204ENST00000428026 NDUFC2-KCTD14E9PQ53 114 aa10.83□□□□□ -0.68
PTPRU-204ENST00000428026 IGKV2-24A0A0C4DH68 120 aa10.82□□□□□ -0.68
PTPRU-204ENST00000428026 C4orf3Q8WVX3 66 aa10.82□□□□□ -0.68
PTPRU-204ENST00000428026 HIGD2AQ9BW72 106 aa10.82□□□□□ -0.68
PTPRU-204ENST00000428026 SMAD5-AS1Q9Y6J3 95 aa10.82□□□□□ -0.68
PTPRU-204ENST00000428026 B9D2Q9BPU9 175 aa10.82□□□□□ -0.68
PTPRU-204ENST00000428026 GAS8-AS1O95177 125 aa10.82□□□□□ -0.68
PTPRU-204ENST00000428026 REG3AQ06141 175 aa10.82□□□□□ -0.68
PTPRU-204ENST00000428026 DCANP1Q8TF63 244 aa10.81□□□□□ -0.68
PTPRU-204ENST00000428026 A6NDX4 124 aa10.81□□□□□ -0.68
PTPRU-204ENST00000428026 IGLV2-11P01706 119 aa10.81□□□□□ -0.68
PTPRU-204ENST00000428026 M0QY20 66 aa10.81□□□□□ -0.68
PTPRU-204ENST00000428026 Q6ZS46 218 aa10.81□□□□□ -0.68
PTPRU-204ENST00000428026 TNFRSF13BO14836 293 aaPredicted RBP10.8□□□□□ -0.68
PTPRU-204ENST00000428026 MYCNOSP40205 109 aa10.8□□□□□ -0.68
PTPRU-204ENST00000428026 UFSP1Q6NVU6 142 aa10.8□□□□□ -0.68
PTPRU-204ENST00000428026 CHCHD10Q8WYQ3 142 aaPredicted RBP10.8□□□□□ -0.68
PTPRU-204ENST00000428026 TANC2Q9HCD6 1990 aa10.8□□□□□ -0.68
PTPRU-204ENST00000428026 USP17L23D6RBM5 183 aa10.8□□□□□ -0.68
PTPRU-204ENST00000428026 XAGE1AQ9HD64 81 aa10.8□□□□□ -0.68
PTPRU-204ENST00000428026 CASC2Q6XLA1 102 aa10.79□□□□□ -0.68
PTPRU-204ENST00000428026 LINC00574Q9H8X3 128 aa10.79□□□□□ -0.68
PTPRU-204ENST00000428026 JMJD1CQ15652 2540 aa10.79□□□□□ -0.68
PTPRU-204ENST00000428026 ODF3BA8MYP8 253 aa10.79□□□□□ -0.68
PTPRU-204ENST00000428026 LY6G6DO95868 133 aa10.79□□□□□ -0.68
PTPRU-204ENST00000428026 C6orf99Q4VX62 202 aa10.79□□□□□ -0.68
PTPRU-204ENST00000428026 SERP2Q8N6R1 65 aa10.78□□□□□ -0.68
PTPRU-204ENST00000428026 ATP5EP2Q5VTU8 51 aa10.78□□□□□ -0.68
PTPRU-204ENST00000428026 C11orf71Q6IPW1 123 aa10.78□□□□□ -0.68
PTPRU-204ENST00000428026 SORL1Q92673 2214 aa10.78□□□□□ -0.68
PTPRU-204ENST00000428026 TMEM89A2RUT3 159 aa10.78□□□□□ -0.68
PTPRU-204ENST00000428026 WFDC10BQ8IUB3 73 aa10.78□□□□□ -0.68
PTPRU-204ENST00000428026 C3orf84H3BNL1 204 aa10.78□□□□□ -0.68
PTPRU-204ENST00000428026 PRR4Q16378 134 aa10.78□□□□□ -0.68
PTPRU-204ENST00000428026 LINC00310P59036 64 aa10.77□□□□□ -0.68
PTPRU-204ENST00000428026 NRACQ8N912 160 aa10.77□□□□□ -0.69
PTPRU-204ENST00000428026 Q8N976 141 aa10.77□□□□□ -0.69
PTPRU-204ENST00000428026 A0A0J9YWU9 116 aa10.76□□□□□ -0.69
PTPRU-204ENST00000428026 K7EQG2 157 aa10.76□□□□□ -0.69
PTPRU-204ENST00000428026 ZFAND3Q9H8U3 227 aa10.76□□□□□ -0.69
PTPRU-204ENST00000428026 FASNP49327 2511 aaKnown RBP10.76□□□□□ -0.69
PTPRU-204ENST00000428026 IBA57-AS1B1ANH7 110 aa10.76□□□□□ -0.69
PTPRU-204ENST00000428026 C1orf158Q8N1D5 194 aa10.76□□□□□ -0.69
PTPRU-204ENST00000428026 C11orf21Q9P2W6 132 aa10.76□□□□□ -0.69
PTPRU-204ENST00000428026 CCKP06307 115 aa10.75□□□□□ -0.69
PTPRU-204ENST00000428026 KRTAP10-9P60411 292 aa10.75□□□□□ -0.69
PTPRU-204ENST00000428026 LST1O00453 97 aa10.75□□□□□ -0.69
PTPRU-204ENST00000428026 LINC00694P0DN24 101 aa10.75□□□□□ -0.69
PTPRU-204ENST00000428026 C1orf195Q5TG92 126 aa10.75□□□□□ -0.69
PTPRU-204ENST00000428026 ZFYVE26Q68DK2 2539 aa10.75□□□□□ -0.69
PTPRU-204ENST00000428026 ODF3Q96PU9 254 aa10.74□□□□□ -0.69
PTPRU-204ENST00000428026 COX7CP15954 63 aa10.74□□□□□ -0.69
PTPRU-204ENST00000428026 H7C423 109 aa10.74□□□□□ -0.69
PTPRU-204ENST00000428026 ATP5EP56381 51 aaPredicted RBP10.74□□□□□ -0.69
PTPRU-204ENST00000428026 PRR9Q5T870 116 aa10.74□□□□□ -0.69
PTPRU-204ENST00000428026 KIAA1549Q9HCM3 1950 aa10.74□□□□□ -0.69
PTPRU-204ENST00000428026 FAM222AQ5U5X8 452 aa10.74□□□□□ -0.69
PTPRU-204ENST00000428026 Q6YL49 198 aa10.74□□□□□ -0.69
PTPRU-204ENST00000428026 MYO9AB2RTY4 2548 aa10.73□□□□□ -0.69
PTPRU-204ENST00000428026 TRBV6-5A0A0K0K1A5 114 aa10.73□□□□□ -0.69
PTPRU-204ENST00000428026 FAM19A1Q7Z5A9 133 aa10.73□□□□□ -0.69
PTPRU-204ENST00000428026 C2CD3Q4AC94 2353 aa10.73□□□□□ -0.69
PTPRU-204ENST00000428026 TSHBP01222 138 aa10.73□□□□□ -0.69
PTPRU-204ENST00000428026 KLK5Q9Y337 293 aaPredicted RBP10.73□□□□□ -0.69
PTPRU-204ENST00000428026 TRBV27A0A0K0K1C4 114 aa10.73□□□□□ -0.69
PTPRU-204ENST00000428026 LINC00526Q96FQ7 95 aa10.73□□□□□ -0.69
PTPRU-204ENST00000428026 TIMM17BO60830 172 aa10.72□□□□□ -0.69
PTPRU-204ENST00000428026 ZNF462Q96JM2 2506 aa10.72□□□□□ -0.69
PTPRU-204ENST00000428026 RNASE3P12724 160 aaKnown RBP10.72□□□□□ -0.69
PTPRU-204ENST00000428026 C10orf99Q6UWK7 81 aa10.72□□□□□ -0.69
PTPRU-204ENST00000428026 IMUPQ9GZP8 106 aa10.72□□□□□ -0.69
PTPRU-204ENST00000428026 BBC3Q96PG8 261 aaPredicted RBP10.71□□□□□ -0.69
PTPRU-204ENST00000428026 M0QXV9 152 aa10.71□□□□□ -0.69
PTPRU-204ENST00000428026 PRM2P04554 102 aa10.71□□□□□ -0.69
PTPRU-204ENST00000428026 Q6ZQY7 126 aa10.71□□□□□ -0.69
PTPRU-204ENST00000428026 TLN2Q9Y4G6 2542 aa10.71□□□□□ -0.7
PTPRU-204ENST00000428026 URB1-AS1Q96HZ7 61 aa10.71□□□□□ -0.7
PTPRU-204ENST00000428026 SMIM11BQ8TCY0 68 aa10.7□□□□□ -0.7
PTPRU-204ENST00000428026 TRBV6-8A0A0A6YYG3 113 aa10.7□□□□□ -0.7
PTPRU-204ENST00000428026 SMR3AQ99954 134 aa10.7□□□□□ -0.7
PTPRU-204ENST00000428026 DNAH12Q6ZR08 3092 aa10.7□□□□□ -0.7
PTPRU-204ENST00000428026 LRP4O75096 1905 aa10.7□□□□□ -0.7
PTPRU-204ENST00000428026 HRCT1Q6UXD1 115 aa10.7□□□□□ -0.7
PTPRU-204ENST00000428026 C11orf45Q8TAV5 145 aa10.69□□□□□ -0.7
PTPRU-204ENST00000428026 NUP210LQ5VU65 1888 aa10.69□□□□□ -0.7
PTPRU-204ENST00000428026 DEFB114Q30KQ6 69 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms