RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-205ENST00000417040 UBE2D4Q9Y2X8 147 aa8.9□□□□□ -0.98
UBR4-205ENST00000417040 CASC2Q6XLA1 102 aa8.9□□□□□ -0.98
UBR4-205ENST00000417040 IGHV4-30-4P0DP06 118 aa8.9□□□□□ -0.98
UBR4-205ENST00000417040 IGHV4-31P0DP07 118 aa8.9□□□□□ -0.98
UBR4-205ENST00000417040 EDN2P20800 178 aa8.9□□□□□ -0.98
UBR4-205ENST00000417040 LMO4P61968 165 aa8.9□□□□□ -0.98
UBR4-205ENST00000417040 DEFB114Q30KQ6 69 aa8.9□□□□□ -0.98
UBR4-205ENST00000417040 A0A087WVE0 104 aa8.9□□□□□ -0.99
UBR4-205ENST00000417040 C4orf48Q5BLP8 95 aa8.9□□□□□ -0.99
UBR4-205ENST00000417040 ODF3Q96PU9 254 aa8.9□□□□□ -0.99
UBR4-205ENST00000417040 ATP5EP2Q5VTU8 51 aa8.89□□□□□ -0.99
UBR4-205ENST00000417040 TRBV27A0A0K0K1C4 114 aa8.89□□□□□ -0.99
UBR4-205ENST00000417040 RPL37AP8A6NKH3 93 aa8.89□□□□□ -0.99
UBR4-205ENST00000417040 CRYGDP07320 174 aa8.89□□□□□ -0.99
UBR4-205ENST00000417040 FREM1Q5H8C1 2179 aa8.89□□□□□ -0.99
UBR4-205ENST00000417040 TMEM89A2RUT3 159 aa8.89□□□□□ -0.99
UBR4-205ENST00000417040 WFDC10AQ9H1F0 79 aa8.89□□□□□ -0.99
UBR4-205ENST00000417040 Q6ZQY7 126 aa8.89□□□□□ -0.99
UBR4-205ENST00000417040 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.88□□□□□ -0.99
UBR4-205ENST00000417040 SOSTDC1Q6X4U4 206 aa8.88□□□□□ -0.99
UBR4-205ENST00000417040 BBC3Q96PG8 261 aaPredicted RBP8.88□□□□□ -0.99
UBR4-205ENST00000417040 GVINP1Q7Z2Y8 2422 aa8.88□□□□□ -0.99
UBR4-205ENST00000417040 EP300Q09472 2414 aaPredicted RBP8.88□□□□□ -0.99
UBR4-205ENST00000417040 NANOS2P60321 138 aaKnown RBP8.88□□□□□ -0.99
UBR4-205ENST00000417040 CACNA1BQ00975 2339 aa8.88□□□□□ -0.99
UBR4-205ENST00000417040 A0A087WZ39 114 aa8.88□□□□□ -0.99
UBR4-205ENST00000417040 C11orf45Q8TAV5 145 aa8.87□□□□□ -0.99
UBR4-205ENST00000417040 A6NED7 52 aa8.87□□□□□ -0.99
UBR4-205ENST00000417040 C1orf195Q5TG92 126 aa8.87□□□□□ -0.99
UBR4-205ENST00000417040 CELA1Q9UNI1 258 aa8.87□□□□□ -0.99
UBR4-205ENST00000417040 SPTBN2O15020 2390 aa8.87□□□□□ -0.99
UBR4-205ENST00000417040 UBE2D1P51668 147 aa8.87□□□□□ -0.99
UBR4-205ENST00000417040 KLK5Q9Y337 293 aaPredicted RBP8.87□□□□□ -0.99
UBR4-205ENST00000417040 PCNX2A6NKB5 2137 aa8.86□□□□□ -0.99
UBR4-205ENST00000417040 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.86□□□□□ -0.998e-7■■■■□ 23.9
UBR4-205ENST00000417040 CNOT1A5YKK6 2376 aaKnown RBP8.86□□□□□ -0.99
UBR4-205ENST00000417040 TSPEAR-AS2P59090 65 aa8.86□□□□□ -0.99
UBR4-205ENST00000417040 DAZAP2Q15038 168 aaPredicted RBP8.86□□□□□ -0.99
UBR4-205ENST00000417040 TNFRSF13BO14836 293 aaPredicted RBP8.85□□□□□ -0.99
UBR4-205ENST00000417040 ZNF580Q9UK33 172 aa8.85□□□□□ -0.99
UBR4-205ENST00000417040 MED12LQ86YW9 2145 aa8.85□□□□□ -0.99
UBR4-205ENST00000417040 COX6A2Q02221 97 aa8.85□□□□□ -0.99
UBR4-205ENST00000417040 Q6YL49 198 aa8.85□□□□□ -0.99
UBR4-205ENST00000417040 ATG2AQ2TAZ0 1938 aa8.84□□□□□ -0.99
UBR4-205ENST00000417040 A0A087WYN8 130 aa8.84□□□□□ -0.99
UBR4-205ENST00000417040 PCNX1Q96RV3 2341 aa8.84□□□□□ -0.99
UBR4-205ENST00000417040 LRRC75A-AS1Q8N1F1 130 aa8.84□□□□□ -0.99
UBR4-205ENST00000417040 PRR3P79522 188 aaKnown RBP8.84□□□□□ -0.99
UBR4-205ENST00000417040 IMUPQ9GZP8 106 aa8.84□□□□□ -0.99
UBR4-205ENST00000417040 PYGO1Q9Y3Y4 419 aa8.84□□□□□ -0.99
UBR4-205ENST00000417040 LOC107984640A0A0U1RRK4 108 aa8.84□□□□□ -1
UBR4-205ENST00000417040 Q6Q795 121 aa8.84□□□□□ -1
UBR4-205ENST00000417040 SPINK6Q6UWN8 80 aa8.84□□□□□ -1
UBR4-205ENST00000417040 FAM19A3Q7Z5A8 133 aa8.83□□□□□ -1
UBR4-205ENST00000417040 IGLV4-69A0A075B6H9 119 aa8.83□□□□□ -1
UBR4-205ENST00000417040 LINC00959A0A1B0GUT2 108 aa8.83□□□□□ -1
UBR4-205ENST00000417040 C9orf85Q96MD7 179 aa8.82□□□□□ -1
UBR4-205ENST00000417040 POLR2KP53803 58 aaKnown RBP8.82□□□□□ -1
UBR4-205ENST00000417040 C9orf116Q5BN46 136 aaPredicted RBP8.82□□□□□ -1
UBR4-205ENST00000417040 IGF2-ASQ6U949 168 aa8.82□□□□□ -1
UBR4-205ENST00000417040 HCFC1P51610 2035 aa8.82□□□□□ -1
UBR4-205ENST00000417040 DEFB131BA0A096LNP1 70 aa8.81□□□□□ -1
UBR4-205ENST00000417040 NOTCH3Q9UM47 2321 aa8.81□□□□□ -1
UBR4-205ENST00000417040 IGIPA6NJ69 53 aa8.81□□□□□ -1
UBR4-205ENST00000417040 Q6JHZ5 121 aa8.81□□□□□ -1
UBR4-205ENST00000417040 ADAMTSL4-AS1Q5T5F5 129 aa8.8□□□□□ -1
UBR4-205ENST00000417040 MIFP14174 115 aa8.8□□□□□ -1
UBR4-205ENST00000417040 TRBV6-4A0A1B0GX49 114 aa8.8□□□□□ -1
UBR4-205ENST00000417040 SMIM9A6NGZ8 99 aa8.8□□□□□ -1
UBR4-205ENST00000417040 LYRM9A8MSI8 78 aa8.8□□□□□ -1
UBR4-205ENST00000417040 PLCE1Q9P212 2302 aa8.8□□□□□ -1
UBR4-205ENST00000417040 ACACAQ13085 2346 aa8.79□□□□□ -1
UBR4-205ENST00000417040 IGLV9-49A0A0B4J1Y8 123 aa8.79□□□□□ -1
UBR4-205ENST00000417040 NDUFC1O43677 76 aa8.79□□□□□ -1
UBR4-205ENST00000417040 MRPS36P82909 103 aaKnown RBP8.79□□□□□ -1
UBR4-205ENST00000417040 EBI3Q14213 229 aa8.79□□□□□ -1
UBR4-205ENST00000417040 ATP5EP56381 51 aaPredicted RBP8.79□□□□□ -1
UBR4-205ENST00000417040 ZNF843Q8N446 348 aa8.79□□□□□ -1
UBR4-205ENST00000417040 SYCNQ0VAF6 134 aa8.78□□□□□ -1
UBR4-205ENST00000417040 KLLNB2CW77 178 aa8.78□□□□□ -1
UBR4-205ENST00000417040 CD164L2Q6UWJ8 174 aa8.77□□□□□ -1
UBR4-205ENST00000417040 IGLV2-18A0A075B6J9 118 aa8.77□□□□□ -1.01
UBR4-205ENST00000417040 FBXL19-AS1Q494R0 122 aa8.77□□□□□ -1.01
UBR4-205ENST00000417040 EML5Q05BV3 1969 aa8.77□□□□□ -1.01
UBR4-205ENST00000417040 PRR15LQ9BU68 103 aa8.77□□□□□ -1.01
UBR4-205ENST00000417040 M0R378 163 aa8.76□□□□□ -1.01
UBR4-205ENST00000417040 CDC42SE2Q9NRR3 84 aa8.76□□□□□ -1.01
UBR4-205ENST00000417040 CACNA1GO43497 2377 aa8.76□□□□□ -1.01
UBR4-205ENST00000417040 ZNF702PQ9H963 129 aa8.76□□□□□ -1.01
UBR4-205ENST00000417040 MED13LQ71F56 2210 aa8.76□□□□□ -1.01
UBR4-205ENST00000417040 ABCA4P78363 2273 aa8.76□□□□□ -1.01
UBR4-205ENST00000417040 PSPHP1O15172 72 aa8.76□□□□□ -1.01
UBR4-205ENST00000417040 ZNF73O43830 326 aaPredicted RBP8.76□□□□□ -1.01
UBR4-205ENST00000417040 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.75□□□□□ -1.01
UBR4-205ENST00000417040 GPR179Q6PRD1 2367 aa8.75□□□□□ -1.01
UBR4-205ENST00000417040 SPTAN1Q13813 2472 aaKnown RBP8.75□□□□□ -1.01
UBR4-205ENST00000417040 M0R2N4 97 aa8.75□□□□□ -1.01
UBR4-205ENST00000417040 Q8N6K4 173 aa8.75□□□□□ -1.01
UBR4-205ENST00000417040 A0A096LNJ9 63 aa8.75□□□□□ -1.01
UBR4-205ENST00000417040 C11orf71Q6IPW1 123 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms