RNA–Protein interactions for RNA: ENST00000396096.6

NUP50-202, Transcript of nucleoporin 50, humanhuman

TSL 1 (best) BASIC

Gene NUP50, Length 1,895 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-202ENST00000396096 SETD2Q9BYW2 2564 aaPredicted RBP11.96□□□□□ -0.49
NUP50-202ENST00000396096 TSPAN13O95857 204 aa11.96□□□□□ -0.49
NUP50-202ENST00000396096 CFC1BP0CG36 223 aa11.96□□□□□ -0.49
NUP50-202ENST00000396096 CFC1P0CG37 223 aa11.96□□□□□ -0.49
NUP50-202ENST00000396096 NTM-AS1Q6ZSK4 140 aa11.96□□□□□ -0.49
NUP50-202ENST00000396096 FASNP49327 2511 aaKnown RBP11.96□□□□□ -0.49
NUP50-202ENST00000396096 F8W1H4 67 aa11.95□□□□□ -0.5
NUP50-202ENST00000396096 PF4P02776 101 aa11.95□□□□□ -0.5
NUP50-202ENST00000396096 DGAT2L7PQ6IED9 249 aa11.95□□□□□ -0.5
NUP50-202ENST00000396096 GTSF1LQ9H1H1 148 aa11.95□□□□□ -0.5
NUP50-202ENST00000396096 TRAV8-3A0A0A6YYJ7 113 aa11.95□□□□□ -0.5
NUP50-202ENST00000396096 TRBV6-4A0A1B0GX49 114 aa11.95□□□□□ -0.5
NUP50-202ENST00000396096 SMAGPQ0VAQ4 97 aa11.95□□□□□ -0.5
NUP50-202ENST00000396096 GEMIN7Q9H840 131 aaKnown RBP11.95□□□□□ -0.5
NUP50-202ENST00000396096 GAGE7O76087 117 aa11.94□□□□□ -0.5
NUP50-202ENST00000396096 APOMO95445 188 aa11.94□□□□□ -0.5
NUP50-202ENST00000396096 GAGE12FP0CL80 117 aa11.94□□□□□ -0.5
NUP50-202ENST00000396096 GAGE12GP0CL81 117 aa11.94□□□□□ -0.5
NUP50-202ENST00000396096 GAGE12IP0CL82 117 aa11.94□□□□□ -0.5
NUP50-202ENST00000396096 GAGE12JA6NER3 117 aa11.93□□□□□ -0.5
NUP50-202ENST00000396096 LINC00694P0DN24 101 aa11.93□□□□□ -0.5
NUP50-202ENST00000396096 GAGE4Q13068 117 aa11.93□□□□□ -0.5
NUP50-202ENST00000396096 GAGE5Q13069 117 aa11.93□□□□□ -0.5
NUP50-202ENST00000396096 GAGE13Q4V321 117 aa11.93□□□□□ -0.5
NUP50-202ENST00000396096 LITAFQ99732 161 aa11.93□□□□□ -0.5
NUP50-202ENST00000396096 TRGV2A0A075B6R0 118 aa11.93□□□□□ -0.5
NUP50-202ENST00000396096 RPL24P83731 157 aaKnown RBP11.93□□□□□ -0.5
NUP50-202ENST00000396096 H3BMG7 143 aa11.92□□□□□ -0.5
NUP50-202ENST00000396096 SPINK8P0C7L1 97 aa11.92□□□□□ -0.5
NUP50-202ENST00000396096 RNF151Q2KHN1 245 aa11.92□□□□□ -0.5
NUP50-202ENST00000396096 ZFAND6Q6FIF0 208 aa11.92□□□□□ -0.5
NUP50-202ENST00000396096 NDUFA12Q9UI09 145 aa11.92□□□□□ -0.5
NUP50-202ENST00000396096 JMJD1CQ15652 2540 aa11.91□□□□□ -0.5
NUP50-202ENST00000396096 A4D1N5 150 aa11.91□□□□□ -0.5
NUP50-202ENST00000396096 HERVK_113P63121 156 aa11.91□□□□□ -0.5
NUP50-202ENST00000396096 MUSTN1Q8IVN3 82 aa11.91□□□□□ -0.5
NUP50-202ENST00000396096 CDKN2A-AS1Q9UH64 79 aa11.91□□□□□ -0.5
NUP50-202ENST00000396096 PRO1854Q9UHT4 67 aa11.91□□□□□ -0.5
NUP50-202ENST00000396096 PRO0461Q9UI25 63 aa11.91□□□□□ -0.5
NUP50-202ENST00000396096 A0A0B4J2C4 111 aa11.91□□□□□ -0.5
NUP50-202ENST00000396096 G3V4G9 280 aa11.91□□□□□ -0.5
NUP50-202ENST00000396096 INSL3P51460 131 aa11.91□□□□□ -0.5
NUP50-202ENST00000396096 LYRM7Q5U5X0 104 aa11.91□□□□□ -0.5
NUP50-202ENST00000396096 SPANXDQ9BXN6 97 aa11.91□□□□□ -0.5
NUP50-202ENST00000396096 SPANXCQ9NY87 97 aa11.91□□□□□ -0.5
NUP50-202ENST00000396096 H7C423 109 aa11.9□□□□□ -0.5
NUP50-202ENST00000396096 LINC00242Q5T6M2 205 aa11.9□□□□□ -0.5
NUP50-202ENST00000396096 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.89□□□□□ -0.51
NUP50-202ENST00000396096 IGLV5-39A0A0G2JS06 123 aa11.89□□□□□ -0.51
NUP50-202ENST00000396096 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.89□□□□□ -0.51
NUP50-202ENST00000396096 TMEM243Q9BU79 118 aa11.89□□□□□ -0.51
NUP50-202ENST00000396096 CDC42SE2Q9NRR3 84 aa11.89□□□□□ -0.51
NUP50-202ENST00000396096 EIF4EBP3O60516 100 aaPredicted RBP11.89□□□□□ -0.51
NUP50-202ENST00000396096 TIMM17BO60830 172 aa11.89□□□□□ -0.51
NUP50-202ENST00000396096 COX6A2Q02221 97 aa11.89□□□□□ -0.51
NUP50-202ENST00000396096 FHL2Q14192 279 aa11.89□□□□□ -0.51
NUP50-202ENST00000396096 LINC00612Q8N6U2 182 aa11.89□□□□□ -0.51
NUP50-202ENST00000396096 TRGV4A0A0C4DH28 118 aa11.88□□□□□ -0.51
NUP50-202ENST00000396096 INAFM1C9JVW0 142 aa11.88□□□□□ -0.51
NUP50-202ENST00000396096 KIR2DL5BQ8NHK3 375 aa11.88□□□□□ -0.51
NUP50-202ENST00000396096 TMEM101Q96IK0 257 aa11.88□□□□□ -0.51
NUP50-202ENST00000396096 NDUFA1O15239 70 aa11.87□□□□□ -0.51
NUP50-202ENST00000396096 WFDC2Q14508 124 aa11.87□□□□□ -0.51
NUP50-202ENST00000396096 NIPBLQ6KC79 2804 aaeCLIP11.87□□□□□ -0.51
NUP50-202ENST00000396096 LOC100131303A0A0U1RQF7 123 aa11.87□□□□□ -0.51
NUP50-202ENST00000396096 A8MZ25 164 aa11.87□□□□□ -0.51
NUP50-202ENST00000396096 IGHV3-33P01772 117 aa11.87□□□□□ -0.51
NUP50-202ENST00000396096 MIAQ16674 131 aa11.87□□□□□ -0.51
NUP50-202ENST00000396096 C9orf66Q5T8R8 295 aa11.87□□□□□ -0.51
NUP50-202ENST00000396096 VPS25Q9BRG1 176 aa11.87□□□□□ -0.51
NUP50-202ENST00000396096 LOC107984156A0A0G2JMH3 177 aa11.86□□□□□ -0.51
NUP50-202ENST00000396096 ADAMTSL4-AS1Q5T5F5 129 aa11.86□□□□□ -0.51
NUP50-202ENST00000396096 ARL17AQ8IVW1 177 aa11.86□□□□□ -0.51
NUP50-202ENST00000396096 RNF183Q96D59 192 aa11.86□□□□□ -0.51
NUP50-202ENST00000396096 NOTCH3Q9UM47 2321 aa11.86□□□□□ -0.51
NUP50-202ENST00000396096 TRBV20-1A0A075B6N2 111 aa11.85□□□□□ -0.51
NUP50-202ENST00000396096 UBE2L6O14933 153 aa11.85□□□□□ -0.51
NUP50-202ENST00000396096 TEX48A0A1B0GUV7 120 aa11.85□□□□□ -0.51
NUP50-202ENST00000396096 SMIM9A6NGZ8 99 aa11.85□□□□□ -0.51
NUP50-202ENST00000396096 CRLF1O75462 422 aa11.85□□□□□ -0.51
NUP50-202ENST00000396096 SMIM1B2RUZ4 78 aa11.83□□□□□ -0.52
NUP50-202ENST00000396096 PSMB2P49721 201 aa11.83□□□□□ -0.52
NUP50-202ENST00000396096 ERG28Q9UKR5 140 aa11.83□□□□□ -0.52
NUP50-202ENST00000396096 X6R8D5 127 aa11.83□□□□□ -0.52
NUP50-202ENST00000396096 TRAV13-1A0A0B4J241 112 aa11.83□□□□□ -0.52
NUP50-202ENST00000396096 F5H768 121 aa11.83□□□□□ -0.52
NUP50-202ENST00000396096 IFITM1P13164 125 aa11.83□□□□□ -0.52
NUP50-202ENST00000396096 HECTD1Q9ULT8 2610 aa11.82□□□□□ -0.52
NUP50-202ENST00000396096 TCL1BO95988 128 aa11.82□□□□□ -0.52
NUP50-202ENST00000396096 SFTA2Q6UW10 78 aa11.82□□□□□ -0.52
NUP50-202ENST00000396096 TRBV6-8A0A0A6YYG3 113 aa11.81□□□□□ -0.52
NUP50-202ENST00000396096 PRSS2P07478 247 aa11.8□□□□□ -0.52
NUP50-202ENST00000396096 SPATA3Q8NHX4 192 aa11.8□□□□□ -0.52
NUP50-202ENST00000396096 OTOGQ6ZRI0 2925 aa11.8□□□□□ -0.52
NUP50-202ENST00000396096 SMCPP49901 116 aaPredicted RBP11.8□□□□□ -0.52
NUP50-202ENST00000396096 ETDBQ3ZM63 59 aa11.8□□□□□ -0.52
NUP50-202ENST00000396096 C2CD3Q4AC94 2353 aa11.79□□□□□ -0.52
NUP50-202ENST00000396096 SH2D6Q7Z4S9 175 aa11.79□□□□□ -0.52
NUP50-202ENST00000396096 MTURNQ8N3F0 131 aa11.79□□□□□ -0.52
NUP50-202ENST00000396096 ATP6V0E2Q8NHE4 81 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 214.2 ms