RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 COX6A2Q02221 97 aa13.39□□□□□ -0.27
CCDC3-201ENST00000378825 CITED2Q99967 270 aaPredicted RBP13.39□□□□□ -0.27
CCDC3-201ENST00000378825 TRGV11A0A075B6L2 103 aa13.39□□□□□ -0.27
CCDC3-201ENST00000378825 LST1O00453 97 aa13.39□□□□□ -0.27
CCDC3-201ENST00000378825 C18orf65Q6ZTR6 163 aa13.39□□□□□ -0.27
CCDC3-201ENST00000378825 WNK1Q9H4A3 2382 aa13.38□□□□□ -0.27
CCDC3-201ENST00000378825 DEFB131AP59861 70 aa13.38□□□□□ -0.27
CCDC3-201ENST00000378825 LINC01600Q96MT4 127 aa13.38□□□□□ -0.27
CCDC3-201ENST00000378825 ZNF469Q96JG9 3925 aaPredicted RBP13.38□□□□□ -0.27
CCDC3-201ENST00000378825 NIPBLQ6KC79 2804 aaeCLIP13.38□□□□□ -0.27
CCDC3-201ENST00000378825 EPG5Q9HCE0 2579 aa13.38□□□□□ -0.27
CCDC3-201ENST00000378825 TINCRA0A1B0GVN0 87 aa13.38□□□□□ -0.27
CCDC3-201ENST00000378825 COX6CP09669 75 aa13.37□□□□□ -0.27
CCDC3-201ENST00000378825 HOXD3P31249 432 aaPredicted RBP13.37□□□□□ -0.27
CCDC3-201ENST00000378825 CHD6Q8TD26 2715 aa13.37□□□□□ -0.27
CCDC3-201ENST00000378825 CHCHD5Q9BSY4 110 aa13.36□□□□□ -0.27
CCDC3-201ENST00000378825 Q8N2B8 174 aa13.36□□□□□ -0.27
CCDC3-201ENST00000378825 TMEM101Q96IK0 257 aa13.36□□□□□ -0.27
CCDC3-201ENST00000378825 SONP18583 2426 aaKnown RBP13.36□□□□□ -0.27
CCDC3-201ENST00000378825 H3BT86 120 aa13.35□□□□□ -0.27
CCDC3-201ENST00000378825 NBPF19A0A087WUL8 3843 aa13.34□□□□□ -0.27
CCDC3-201ENST00000378825 SLURP1P55000 103 aa13.33□□□□□ -0.27
CCDC3-201ENST00000378825 Q6Q795 121 aa13.33□□□□□ -0.27
CCDC3-201ENST00000378825 SOSTDC1Q6X4U4 206 aa13.33□□□□□ -0.28
CCDC3-201ENST00000378825 LINC01356Q8N9X3 169 aa13.33□□□□□ -0.28
CCDC3-201ENST00000378825 Q9H8V8 135 aa13.33□□□□□ -0.28
CCDC3-201ENST00000378825 JMJD1CQ15652 2540 aa13.32□□□□□ -0.28
CCDC3-201ENST00000378825 SPANXA1Q9NS26 97 aa13.32□□□□□ -0.28
CCDC3-201ENST00000378825 SETD2Q9BYW2 2564 aaPredicted RBP13.31□□□□□ -0.28
CCDC3-201ENST00000378825 IGHV3OR16-12A0A075B7B8 117 aa13.31□□□□□ -0.28
CCDC3-201ENST00000378825 LINC00694P0DN24 101 aa13.31□□□□□ -0.28
CCDC3-201ENST00000378825 KRTAP10-9P60411 292 aa13.31□□□□□ -0.28
CCDC3-201ENST00000378825 SMIM20Q8N5G0 67 aa13.31□□□□□ -0.28
CCDC3-201ENST00000378825 BBC3Q96PG8 261 aaPredicted RBP13.31□□□□□ -0.28
CCDC3-201ENST00000378825 LINC00308Q8TCZ7 52 aa13.31□□□□□ -0.28
CCDC3-201ENST00000378825 UBR5O95071 2799 aaPredicted RBP13.3□□□□□ -0.28
CCDC3-201ENST00000378825 NF1P21359 2839 aa13.3□□□□□ -0.28
CCDC3-201ENST00000378825 A0A096LNT2 108 aa13.29□□□□□ -0.28
CCDC3-201ENST00000378825 SMCR5Q8TEV8 140 aa13.29□□□□□ -0.28
CCDC3-201ENST00000378825 EDA2RQ9HAV5 297 aa13.29□□□□□ -0.28
CCDC3-201ENST00000378825 CCDC168Q8NDH2 2452 aa13.29□□□□□ -0.28
CCDC3-201ENST00000378825 NDUFA1O15239 70 aa13.29□□□□□ -0.28
CCDC3-201ENST00000378825 MEIG1Q5JSS6 88 aa13.28□□□□□ -0.28
CCDC3-201ENST00000378825 LINC01587Q99440 93 aa13.28□□□□□ -0.28
CCDC3-201ENST00000378825 YAE1D1Q9NRH1 226 aa13.28□□□□□ -0.28
CCDC3-201ENST00000378825 TRAV13-1A0A0B4J241 112 aa13.27□□□□□ -0.28
CCDC3-201ENST00000378825 LINC00242Q5T6M2 205 aa13.27□□□□□ -0.28
CCDC3-201ENST00000378825 DGAT2L7PQ6IED9 249 aa13.27□□□□□ -0.28
CCDC3-201ENST00000378825 DEFB121Q5J5C9 76 aa13.27□□□□□ -0.29
CCDC3-201ENST00000378825 C11orf72Q8NBR9 251 aa13.27□□□□□ -0.29
CCDC3-201ENST00000378825 DSCR9P59020 149 aa13.26□□□□□ -0.29
CCDC3-201ENST00000378825 IGHV3-53P01767 116 aa13.26□□□□□ -0.29
CCDC3-201ENST00000378825 RNF152Q8N8N0 203 aa13.26□□□□□ -0.29
CCDC3-201ENST00000378825 FAM218AQ96MZ4 157 aa13.26□□□□□ -0.29
CCDC3-201ENST00000378825 APCP25054 2843 aa13.25□□□□□ -0.29
CCDC3-201ENST00000378825 ZNF415Q09FC8 603 aa13.25□□□□□ -0.29
CCDC3-201ENST00000378825 PIK3CD-AS1Q5SR53 167 aa13.25□□□□□ -0.29
CCDC3-201ENST00000378825 TMEM89A2RUT3 159 aa13.25□□□□□ -0.29
CCDC3-201ENST00000378825 TIMM17BO60830 172 aa13.24□□□□□ -0.29
CCDC3-201ENST00000378825 IGLV5-45A0A087WSX0 123 aa13.24□□□□□ -0.29
CCDC3-201ENST00000378825 FAM236AA0A1B0GUQ0 79 aa13.24□□□□□ -0.29
CCDC3-201ENST00000378825 FAM236BA0A1B0GV22 79 aa13.24□□□□□ -0.29
CCDC3-201ENST00000378825 FAM240AA0A1B0GVK7 77 aa13.24□□□□□ -0.29
CCDC3-201ENST00000378825 VPREB3Q9UKI3 123 aa13.24□□□□□ -0.29
CCDC3-201ENST00000378825 SMIM1B2RUZ4 78 aa13.23□□□□□ -0.29
CCDC3-201ENST00000378825 XCL2Q9UBD3 114 aa13.23□□□□□ -0.29
CCDC3-201ENST00000378825 C22orf24Q9Y442 160 aa13.23□□□□□ -0.29
CCDC3-201ENST00000378825 HERV-K104P63124 156 aa13.23□□□□□ -0.29
CCDC3-201ENST00000378825 DAZ2Q13117 558 aaKnown RBP13.23□□□□□ -0.29
CCDC3-201ENST00000378825 DAZ4Q86SG3 579 aaKnown RBP13.23□□□□□ -0.29
CCDC3-201ENST00000378825 ZNF702PQ9H963 129 aa13.23□□□□□ -0.29
CCDC3-201ENST00000378825 DAZ3Q9NR90 486 aaKnown RBP13.23□□□□□ -0.29
CCDC3-201ENST00000378825 IGLV5-39A0A0G2JS06 123 aa13.22□□□□□ -0.29
CCDC3-201ENST00000378825 COX7A2LO14548 114 aa13.22□□□□□ -0.29
CCDC3-201ENST00000378825 TIRAPP58753 221 aa13.22□□□□□ -0.29
CCDC3-201ENST00000378825 CIRBPQ14011 172 aaKnown RBP13.22□□□□□ -0.29
CCDC3-201ENST00000378825 IGHV4-31P0DP07 118 aa13.21□□□□□ -0.29
CCDC3-201ENST00000378825 SHISA2Q6UWI4 295 aa13.21□□□□□ -0.29
CCDC3-201ENST00000378825 PRIMA1Q86XR5 153 aa13.21□□□□□ -0.29
CCDC3-201ENST00000378825 UBE2E2Q96LR5 201 aa13.21□□□□□ -0.29
CCDC3-201ENST00000378825 TRBV7-7A0A0K0K1E9 115 aa13.21□□□□□ -0.29
CCDC3-201ENST00000378825 Q9HAA7 133 aa13.21□□□□□ -0.29
CCDC3-201ENST00000378825 NTM-AS1Q6ZSK4 140 aa13.2□□□□□ -0.3
CCDC3-201ENST00000378825 MAP6D1Q9H9H5 199 aa13.2□□□□□ -0.3
CCDC3-201ENST00000378825 BEAN1Q3B7T3 259 aa13.19□□□□□ -0.3
CCDC3-201ENST00000378825 Q96MF0 132 aa13.19□□□□□ -0.3
CCDC3-201ENST00000378825 ITPR3Q14573 2671 aa13.19□□□□□ -0.3
CCDC3-201ENST00000378825 MRPL23Q16540 153 aaKnown RBP13.19□□□□□ -0.3
CCDC3-201ENST00000378825 Q6YL49 198 aa13.19□□□□□ -0.3
CCDC3-201ENST00000378825 SETXQ7Z333 2677 aaKnown RBP13.19□□□□□ -0.3
CCDC3-201ENST00000378825 CR1P17927 2039 aa13.19□□□□□ -0.3
CCDC3-201ENST00000378825 KHDC1LQ5JSQ8 128 aa13.19□□□□□ -0.3
CCDC3-201ENST00000378825 J3QLI3 93 aa13.18□□□□□ -0.3
CCDC3-201ENST00000378825 BAALC-AS2P0C853 105 aa13.18□□□□□ -0.3
CCDC3-201ENST00000378825 A8MTW9 85 aa13.18□□□□□ -0.3
CCDC3-201ENST00000378825 TRGV1A0A0A0MS02 117 aa13.17□□□□□ -0.3
CCDC3-201ENST00000378825 RS1O15537 224 aa13.17□□□□□ -0.3
CCDC3-201ENST00000378825 HERVK_113P63121 156 aa13.17□□□□□ -0.3
CCDC3-201ENST00000378825 C9orf129Q5T035 196 aaKnown RBP13.16□□□□□ -0.3
CCDC3-201ENST00000378825 FLNAP21333 2647 aaKnown RBP13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms