RNA–Protein interactions for RNA: ENST00000378726.1

SSU72-204, Transcript of SSU72 homolog, RNA polymerase II CTD phosphatase, humanhuman

TSL 2

Gene SSU72, Length 2,238 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72-204ENST00000378726 P0DMU3 169 aa13.94□□□□□ -0.18
SSU72-204ENST00000378726 FAM231AP0DMU4 169 aa13.94□□□□□ -0.18
SSU72-204ENST00000378726 FAM231CP0DMU5 169 aa13.94□□□□□ -0.18
SSU72-204ENST00000378726 NOP10Q9NPE3 64 aaKnown RBP13.94□□□□□ -0.18
SSU72-204ENST00000378726 UBE2D3P61077 147 aa13.93□□□□□ -0.18
SSU72-204ENST00000378726 UBE2D2P62837 147 aa13.93□□□□□ -0.18
SSU72-204ENST00000378726 C16orf74Q96GX8 76 aa13.93□□□□□ -0.18
SSU72-204ENST00000378726 OPRPNQ99935 248 aaPredicted RBP13.93□□□□□ -0.18
SSU72-204ENST00000378726 IGHV3-30P01768 117 aa13.92□□□□□ -0.18
SSU72-204ENST00000378726 IGHV3-30-5P0DP03 117 aa13.92□□□□□ -0.18
SSU72-204ENST00000378726 Q6ZTI0 123 aa13.92□□□□□ -0.18
SSU72-204ENST00000378726 DAZ2Q13117 558 aaKnown RBP13.92□□□□□ -0.18
SSU72-204ENST00000378726 AMELXQ99217 191 aa13.92□□□□□ -0.18
SSU72-204ENST00000378726 GEMIN7Q9H840 131 aaKnown RBP13.92□□□□□ -0.18
SSU72-204ENST00000378726 PLAC8L1A1L4L8 177 aa13.91□□□□□ -0.18
SSU72-204ENST00000378726 CFC1BP0CG36 223 aa13.91□□□□□ -0.18
SSU72-204ENST00000378726 CFC1P0CG37 223 aa13.91□□□□□ -0.18
SSU72-204ENST00000378726 CDIP1Q9H305 208 aa13.91□□□□□ -0.18
SSU72-204ENST00000378726 Q9UF83 564 aa13.91□□□□□ -0.18
SSU72-204ENST00000378726 TNFRSF18Q9Y5U5 241 aa13.91□□□□□ -0.18
SSU72-204ENST00000378726 NACAE9PAV3 2078 aa13.91□□□□□ -0.18
SSU72-204ENST00000378726 I3L3M4 83 aa13.91□□□□□ -0.18
SSU72-204ENST00000378726 IGHV3-53P01767 116 aa13.91□□□□□ -0.18
SSU72-204ENST00000378726 NFE4Q86UQ8 179 aa13.91□□□□□ -0.18
SSU72-204ENST00000378726 SLC25A29Q8N8R3 303 aa13.91□□□□□ -0.18
SSU72-204ENST00000378726 TRAV26-1A0A087WT03 109 aa13.9□□□□□ -0.18
SSU72-204ENST00000378726 C3orf56Q8N813 242 aa13.9□□□□□ -0.18
SSU72-204ENST00000378726 FBN1P35555 2871 aaKnown RBP13.9□□□□□ -0.18
SSU72-204ENST00000378726 J3QQQ9 107 aa13.9□□□□□ -0.18
SSU72-204ENST00000378726 SPINK8P0C7L1 97 aa13.89□□□□□ -0.19
SSU72-204ENST00000378726 PRIMA1Q86XR5 153 aa13.89□□□□□ -0.19
SSU72-204ENST00000378726 CRYBA4P53673 196 aa13.88□□□□□ -0.19
SSU72-204ENST00000378726 WIPF1O43516 503 aa13.88□□□□□ -0.19
SSU72-204ENST00000378726 TCL1BO95988 128 aa13.88□□□□□ -0.19
SSU72-204ENST00000378726 OVOL2Q9BRP0 275 aa13.88□□□□□ -0.19
SSU72-204ENST00000378726 LGALS3P17931 250 aaKnown RBP13.87□□□□□ -0.19
SSU72-204ENST00000378726 LYRM7Q5U5X0 104 aa13.87□□□□□ -0.19
SSU72-204ENST00000378726 VCX2Q9H322 139 aa13.87□□□□□ -0.19
SSU72-204ENST00000378726 TRAV4A0A0B4J268 109 aa13.86□□□□□ -0.19
SSU72-204ENST00000378726 RHOHQ15669 191 aa13.86□□□□□ -0.19
SSU72-204ENST00000378726 GAGE7O76087 117 aa13.86□□□□□ -0.19
SSU72-204ENST00000378726 GAGE12FP0CL80 117 aa13.86□□□□□ -0.19
SSU72-204ENST00000378726 GAGE12GP0CL81 117 aa13.86□□□□□ -0.19
SSU72-204ENST00000378726 GAGE12IP0CL82 117 aa13.86□□□□□ -0.19
SSU72-204ENST00000378726 DNAJC30Q96LL9 226 aa13.86□□□□□ -0.19
SSU72-204ENST00000378726 TMEM223A0PJW6 202 aa13.85□□□□□ -0.19
SSU72-204ENST00000378726 Q6ZUT4 128 aa13.85□□□□□ -0.19
SSU72-204ENST00000378726 C10orf126Q8N4M7 172 aa13.85□□□□□ -0.19
SSU72-204ENST00000378726 PPDPFLQ8WWR9 84 aa13.85□□□□□ -0.19
SSU72-204ENST00000378726 IGHV3-64A0A075B6Q5 118 aa13.84□□□□□ -0.19
SSU72-204ENST00000378726 TRGV2A0A075B6R0 118 aa13.84□□□□□ -0.19
SSU72-204ENST00000378726 MT-ATP8P03928 68 aa13.84□□□□□ -0.19
SSU72-204ENST00000378726 CARD19Q96LW7 228 aa13.84□□□□□ -0.19
SSU72-204ENST00000378726 SHISA2Q6UWI4 295 aa13.84□□□□□ -0.19
SSU72-204ENST00000378726 PRO1854Q9UHT4 67 aa13.84□□□□□ -0.19
SSU72-204ENST00000378726 LEPROTO15243 131 aa13.83□□□□□ -0.2
SSU72-204ENST00000378726 EIF4EBP3O60516 100 aaPredicted RBP13.83□□□□□ -0.2
SSU72-204ENST00000378726 TEN1Q86WV5 123 aa13.83□□□□□ -0.2
SSU72-204ENST00000378726 C20orf203Q8NBC4 194 aa13.83□□□□□ -0.2
SSU72-204ENST00000378726 ZNF22P17026 224 aaPredicted RBP13.83□□□□□ -0.2
SSU72-204ENST00000378726 KIR2DL5BQ8NHK3 375 aa13.83□□□□□ -0.2
SSU72-204ENST00000378726 XGP55808 180 aa13.82□□□□□ -0.2
SSU72-204ENST00000378726 OXLD1Q5BKU9 147 aa13.82□□□□□ -0.2
SSU72-204ENST00000378726 TRBV20-1A0A075B6N2 111 aa13.82□□□□□ -0.2
SSU72-204ENST00000378726 A0A0J9YXV3 536 aa13.82□□□□□ -0.2
SSU72-204ENST00000378726 A4D1N5 150 aa13.82□□□□□ -0.2
SSU72-204ENST00000378726 APOC4P55056 127 aa13.82□□□□□ -0.2
SSU72-204ENST00000378726 X6R8D5 127 aa13.82□□□□□ -0.2
SSU72-204ENST00000378726 STAB1Q9NY15 2570 aa13.81□□□□□ -0.2
SSU72-204ENST00000378726 SCGB1C2P0DMR2 95 aa13.81□□□□□ -0.2
SSU72-204ENST00000378726 IGLV4-3A0A075B6K6 122 aa13.8□□□□□ -0.2
SSU72-204ENST00000378726 SMIM9A6NGZ8 99 aa13.8□□□□□ -0.2
SSU72-204ENST00000378726 SBSPONQ8IVN8 264 aa13.8□□□□□ -0.2
SSU72-204ENST00000378726 NBEAL2Q6ZNJ1 2754 aa13.8□□□□□ -0.2
SSU72-204ENST00000378726 IGHV3-38A0A0C4DH36 116 aa13.8□□□□□ -0.2
SSU72-204ENST00000378726 K7EQD1 137 aa13.79□□□□□ -0.2
SSU72-204ENST00000378726 DEFB135Q30KP9 77 aa13.79□□□□□ -0.2
SSU72-204ENST00000378726 MUSTN1Q8IVN3 82 aa13.79□□□□□ -0.2
SSU72-204ENST00000378726 ERG28Q9UKR5 140 aa13.79□□□□□ -0.2
SSU72-204ENST00000378726 TRBV10-1A0A0K0K1A3 114 aa13.78□□□□□ -0.2
SSU72-204ENST00000378726 IGHV4-30-4P0DP06 118 aa13.78□□□□□ -0.2
SSU72-204ENST00000378726 IGHV3-33P01772 117 aa13.77□□□□□ -0.21
SSU72-204ENST00000378726 RPL36AP83881 106 aaKnown RBP13.77□□□□□ -0.21
SSU72-204ENST00000378726 RPL36ALQ969Q0 106 aaKnown RBP13.77□□□□□ -0.21
SSU72-204ENST00000378726 H7C2G1 150 aa13.76□□□□□ -0.21
SSU72-204ENST00000378726 DEFB130BP0DP73 79 aa13.76□□□□□ -0.21
SSU72-204ENST00000378726 DEFB130AP0DP74 79 aa13.76□□□□□ -0.21
SSU72-204ENST00000378726 ANKRD29Q8N6D5 301 aa13.76□□□□□ -0.21
SSU72-204ENST00000378726 FAM104AQ969W3 186 aa13.76□□□□□ -0.21
SSU72-204ENST00000378726 TRGV4A0A0C4DH28 118 aa13.76□□□□□ -0.21
SSU72-204ENST00000378726 TMEM262E9PQX1 116 aa13.76□□□□□ -0.21
SSU72-204ENST00000378726 CHCHD7Q9BUK0 85 aa13.75□□□□□ -0.21
SSU72-204ENST00000378726 MAST4O15021 2626 aa13.75□□□□□ -0.21
SSU72-204ENST00000378726 KRTAP10-11P60412 298 aa13.75□□□□□ -0.21
SSU72-204ENST00000378726 CEMP1Q6PRD7 247 aaPredicted RBP13.75□□□□□ -0.21
SSU72-204ENST00000378726 A0A0J9YXY3 114 aa13.74□□□□□ -0.21
SSU72-204ENST00000378726 TRBV6-4A0A1B0GX49 114 aa13.74□□□□□ -0.21
SSU72-204ENST00000378726 GAGE12JA6NER3 117 aa13.74□□□□□ -0.21
SSU72-204ENST00000378726 GAGE4Q13068 117 aa13.74□□□□□ -0.21
SSU72-204ENST00000378726 GAGE5Q13069 117 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms