RNA–Protein interactions for RNA: ENST00000350028.4

SAMM50-201, Transcript of SAMM50 sorting and assembly machinery component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SAMM50, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SAMM50-201ENST00000350028 GAGE12JA6NER3 117 aa11.89□□□□□ -0.51
SAMM50-201ENST00000350028 GAGE10A6NGK3 116 aa11.89□□□□□ -0.51
SAMM50-201ENST00000350028 GAGE4Q13068 117 aa11.89□□□□□ -0.51
SAMM50-201ENST00000350028 GAGE5Q13069 117 aa11.89□□□□□ -0.51
SAMM50-201ENST00000350028 SRSF9Q13242 221 aaKnown RBP eCLIP11.89□□□□□ -0.51
SAMM50-201ENST00000350028 GAGE13Q4V321 117 aa11.89□□□□□ -0.51
SAMM50-201ENST00000350028 OR5A1Q8NGJ0 315 aa11.89□□□□□ -0.51
SAMM50-201ENST00000350028 A0A1B0GWB2 263 aa11.88□□□□□ -0.51
SAMM50-201ENST00000350028 SAMD5Q5TGI4 173 aa11.88□□□□□ -0.51
SAMM50-201ENST00000350028 ATRQ13535 2644 aa11.87□□□□□ -0.51
SAMM50-201ENST00000350028 TRGV4A0A0C4DH28 118 aa11.87□□□□□ -0.51
SAMM50-201ENST00000350028 TMEM238LA0A1B0GVL6 79 aa11.87□□□□□ -0.51
SAMM50-201ENST00000350028 SMIM9A6NGZ8 99 aa11.87□□□□□ -0.51
SAMM50-201ENST00000350028 A6NJY4 79 aa11.87□□□□□ -0.51
SAMM50-201ENST00000350028 K7ERJ3 54 aa11.87□□□□□ -0.51
SAMM50-201ENST00000350028 RNASE13Q5GAN3 156 aaKnown RBP11.87□□□□□ -0.51
SAMM50-201ENST00000350028 KIR2DL5BQ8NHK3 375 aa11.87□□□□□ -0.51
SAMM50-201ENST00000350028 GTSF1LQ9H1H1 148 aa11.87□□□□□ -0.51
SAMM50-201ENST00000350028 CSDC2Q9Y534 153 aaKnown RBP11.87□□□□□ -0.51
SAMM50-201ENST00000350028 FABP2P12104 132 aa11.86□□□□□ -0.51
SAMM50-201ENST00000350028 NTM-AS1Q6ZSK4 140 aa11.86□□□□□ -0.51
SAMM50-201ENST00000350028 NAA38Q9BRA0 125 aaKnown RBP11.86□□□□□ -0.51
SAMM50-201ENST00000350028 K7EP34 96 aa11.86□□□□□ -0.51
SAMM50-201ENST00000350028 UBE2D1P51668 147 aa11.86□□□□□ -0.51
SAMM50-201ENST00000350028 TIRAPP58753 221 aa11.86□□□□□ -0.51
SAMM50-201ENST00000350028 SBSPONQ8IVN8 264 aa11.86□□□□□ -0.51
SAMM50-201ENST00000350028 SPATA3Q8NHX4 192 aa11.86□□□□□ -0.51
SAMM50-201ENST00000350028 FHL2Q14192 279 aa11.85□□□□□ -0.51
SAMM50-201ENST00000350028 GEMIN7Q9H840 131 aaKnown RBP11.85□□□□□ -0.51
SAMM50-201ENST00000350028 IGHV1-58A0A0C4DH39 117 aa11.84□□□□□ -0.51
SAMM50-201ENST00000350028 IGLL5B9A064 214 aa11.84□□□□□ -0.51
SAMM50-201ENST00000350028 IGHV3-30-3P0DP02 117 aa11.84□□□□□ -0.51
SAMM50-201ENST00000350028 LINC00612Q8N6U2 182 aa11.84□□□□□ -0.51
SAMM50-201ENST00000350028 IGHV3-64A0A075B6Q5 118 aa11.83□□□□□ -0.52
SAMM50-201ENST00000350028 H7C423 109 aa11.83□□□□□ -0.52
SAMM50-201ENST00000350028 PRIMA1Q86XR5 153 aa11.83□□□□□ -0.52
SAMM50-201ENST00000350028 TMEM243Q9BU79 118 aa11.83□□□□□ -0.52
SAMM50-201ENST00000350028 SPCS1Q9Y6A9 102 aa11.83□□□□□ -0.52
SAMM50-201ENST00000350028 X6R8D5 127 aa11.83□□□□□ -0.52
SAMM50-201ENST00000350028 IGLV5-45A0A087WSX0 123 aa11.82□□□□□ -0.52
SAMM50-201ENST00000350028 LINC00694P0DN24 101 aa11.82□□□□□ -0.52
SAMM50-201ENST00000350028 FAM19A3Q7Z5A8 133 aa11.82□□□□□ -0.52
SAMM50-201ENST00000350028 WFDC9Q8NEX5 89 aa11.82□□□□□ -0.52
SAMM50-201ENST00000350028 LOC100131303A0A0U1RQF7 123 aa11.81□□□□□ -0.52
SAMM50-201ENST00000350028 IGHV3-30P01768 117 aa11.81□□□□□ -0.52
SAMM50-201ENST00000350028 IGHV3-30-5P0DP03 117 aa11.81□□□□□ -0.52
SAMM50-201ENST00000350028 VSIG2Q96IQ7 327 aa11.81□□□□□ -0.52
SAMM50-201ENST00000350028 APOC4P55056 127 aa11.8□□□□□ -0.52
SAMM50-201ENST00000350028 TRAV8-3A0A0A6YYJ7 113 aa11.8□□□□□ -0.52
SAMM50-201ENST00000350028 UBE2L6O14933 153 aa11.8□□□□□ -0.52
SAMM50-201ENST00000350028 HERVK_113P63121 156 aa11.8□□□□□ -0.52
SAMM50-201ENST00000350028 TMEM101Q96IK0 257 aa11.8□□□□□ -0.52
SAMM50-201ENST00000350028 CDC42SE2Q9NRR3 84 aa11.8□□□□□ -0.52
SAMM50-201ENST00000350028 TMEM238C9JI98 176 aa11.79□□□□□ -0.52
SAMM50-201ENST00000350028 DEFB130BP0DP73 79 aa11.79□□□□□ -0.52
SAMM50-201ENST00000350028 DEFB130AP0DP74 79 aa11.79□□□□□ -0.52
SAMM50-201ENST00000350028 A0A0J9YXY3 114 aa11.78□□□□□ -0.52
SAMM50-201ENST00000350028 SPINK8P0C7L1 97 aa11.78□□□□□ -0.52
SAMM50-201ENST00000350028 C10orf126Q8N4M7 172 aa11.78□□□□□ -0.52
SAMM50-201ENST00000350028 CDKN2A-AS1Q9UH64 79 aa11.78□□□□□ -0.52
SAMM50-201ENST00000350028 WIPF1O43516 503 aa11.77□□□□□ -0.52
SAMM50-201ENST00000350028 LINC00242Q5T6M2 205 aa11.77□□□□□ -0.52
SAMM50-201ENST00000350028 LYRM9A8MSI8 78 aa11.77□□□□□ -0.53
SAMM50-201ENST00000350028 NDUFA12Q9UI09 145 aa11.77□□□□□ -0.53
SAMM50-201ENST00000350028 KRTAP24-1Q3LI83 254 aa11.76□□□□□ -0.53
SAMM50-201ENST00000350028 ZFAND6Q6FIF0 208 aa11.76□□□□□ -0.53
SAMM50-201ENST00000350028 VWFP04275 2813 aa11.75□□□□□ -0.53
SAMM50-201ENST00000350028 TRBV6-8A0A0A6YYG3 113 aa11.75□□□□□ -0.53
SAMM50-201ENST00000350028 COX6A2Q02221 97 aa11.75□□□□□ -0.53
SAMM50-201ENST00000350028 APOMO95445 188 aa11.74□□□□□ -0.53
SAMM50-201ENST00000350028 PGPEP1Q9NXJ5 209 aa11.74□□□□□ -0.53
SAMM50-201ENST00000350028 RPL24P83731 157 aaKnown RBP11.74□□□□□ -0.53
SAMM50-201ENST00000350028 TRAV13-1A0A0B4J241 112 aa11.73□□□□□ -0.53
SAMM50-201ENST00000350028 CFC1BP0CG36 223 aa11.73□□□□□ -0.53
SAMM50-201ENST00000350028 CFC1P0CG37 223 aa11.73□□□□□ -0.53
SAMM50-201ENST00000350028 DEFB135Q30KP9 77 aa11.73□□□□□ -0.53
SAMM50-201ENST00000350028 FAM222AQ5U5X8 452 aa11.73□□□□□ -0.53
SAMM50-201ENST00000350028 MUSTN1Q8IVN3 82 aa11.73□□□□□ -0.53
SAMM50-201ENST00000350028 PRO0255Q9UI72 69 aa11.73□□□□□ -0.53
SAMM50-201ENST00000350028 NOTCH3Q9UM47 2321 aa11.73□□□□□ -0.53
SAMM50-201ENST00000350028 IGLV5-39A0A0G2JS06 123 aa11.72□□□□□ -0.53
SAMM50-201ENST00000350028 TIMM17BO60830 172 aa11.72□□□□□ -0.53
SAMM50-201ENST00000350028 GYPEP15421 78 aa11.72□□□□□ -0.53
SAMM50-201ENST00000350028 GAGE6Q13070 117 aa11.72□□□□□ -0.53
SAMM50-201ENST00000350028 ATP6V0E2Q8NHE4 81 aa11.72□□□□□ -0.53
SAMM50-201ENST00000350028 LITAFQ99732 161 aa11.72□□□□□ -0.53
SAMM50-201ENST00000350028 SPANXDQ9BXN6 97 aa11.72□□□□□ -0.53
SAMM50-201ENST00000350028 SPANXCQ9NY87 97 aa11.72□□□□□ -0.53
SAMM50-201ENST00000350028 COL6A5A8TX70 2615 aa11.71□□□□□ -0.53
SAMM50-201ENST00000350028 STAB1Q9NY15 2570 aa11.71□□□□□ -0.53
SAMM50-201ENST00000350028 A4D1N5 150 aa11.71□□□□□ -0.54
SAMM50-201ENST00000350028 A8MZ25 164 aa11.71□□□□□ -0.54
SAMM50-201ENST00000350028 NDUFA1O15239 70 aa11.71□□□□□ -0.54
SAMM50-201ENST00000350028 CHCHD5Q9BSY4 110 aa11.71□□□□□ -0.54
SAMM50-201ENST00000350028 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.7□□□□□ -0.54
SAMM50-201ENST00000350028 TSPAN13O95857 204 aa11.7□□□□□ -0.54
SAMM50-201ENST00000350028 MIFP14174 115 aa11.7□□□□□ -0.54
SAMM50-201ENST00000350028 PRO1854Q9UHT4 67 aa11.7□□□□□ -0.54
SAMM50-201ENST00000350028 TRRAPQ9Y4A5 3859 aa11.7□□□□□ -0.54
SAMM50-201ENST00000350028 IGHV4-28A0A0C4DH34 117 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms