RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 IGLV4-69A0A075B6H9 119 aa12.94□□□□□ -0.34
USP39-201ENST00000323701 NMUP48645 174 aa12.94□□□□□ -0.34
USP39-201ENST00000323701 TMEM97Q5BJF2 176 aa12.94□□□□□ -0.34
USP39-201ENST00000323701 RNASE13Q5GAN3 156 aaKnown RBP12.94□□□□□ -0.34
USP39-201ENST00000323701 CIDEAO60543 219 aa12.94□□□□□ -0.34
USP39-201ENST00000323701 LINC01549A6NIU2 74 aa12.93□□□□□ -0.34
USP39-201ENST00000323701 LINC00694P0DN24 101 aa12.93□□□□□ -0.34
USP39-201ENST00000323701 PMVKQ15126 192 aa12.93□□□□□ -0.34
USP39-201ENST00000323701 UBE2D4Q9Y2X8 147 aa12.93□□□□□ -0.34
USP39-201ENST00000323701 TTTY13Q9BZ97 58 aa12.93□□□□□ -0.34
USP39-201ENST00000323701 DAZ4Q86SG3 579 aaKnown RBP12.92□□□□□ -0.34
USP39-201ENST00000323701 DAZ3Q9NR90 486 aaKnown RBP12.92□□□□□ -0.34
USP39-201ENST00000323701 CRYBA4P53673 196 aa12.91□□□□□ -0.34
USP39-201ENST00000323701 C11orf86A6NJI1 115 aa12.91□□□□□ -0.34
USP39-201ENST00000323701 PLNP26678 52 aa12.91□□□□□ -0.34
USP39-201ENST00000323701 PYGO1Q9Y3Y4 419 aa12.91□□□□□ -0.34
USP39-201ENST00000323701 GAGE10A6NGK3 116 aa12.9□□□□□ -0.34
USP39-201ENST00000323701 DAD1P61803 113 aa12.9□□□□□ -0.34
USP39-201ENST00000323701 GTF2H5Q6ZYL4 71 aa12.9□□□□□ -0.34
USP39-201ENST00000323701 PRADC1Q9BSG0 188 aa12.9□□□□□ -0.34
USP39-201ENST00000323701 GYPEP15421 78 aa12.89□□□□□ -0.35
USP39-201ENST00000323701 Q6ZUT4 128 aa12.89□□□□□ -0.35
USP39-201ENST00000323701 SBSPONQ8IVN8 264 aa12.89□□□□□ -0.35
USP39-201ENST00000323701 HUWE1Q7Z6Z7 4374 aaKnown RBP12.89□□□□□ -0.35
USP39-201ENST00000323701 H3BRM9 83 aa12.88□□□□□ -0.35
USP39-201ENST00000323701 VSIG2Q96IQ7 327 aa12.88□□□□□ -0.35
USP39-201ENST00000323701 DNHD1Q96M86 4753 aa12.88□□□□□ -0.35
USP39-201ENST00000323701 A0A0J9YY99 117 aa12.88□□□□□ -0.35
USP39-201ENST00000323701 SIVA1O15304 175 aa12.88□□□□□ -0.35
USP39-201ENST00000323701 SPART-AS1P0CW21 52 aa12.88□□□□□ -0.35
USP39-201ENST00000323701 AMELXQ99217 191 aa12.88□□□□□ -0.35
USP39-201ENST00000323701 PRO0255Q9UI72 69 aa12.88□□□□□ -0.35
USP39-201ENST00000323701 A6NDN8 102 aa12.87□□□□□ -0.35
USP39-201ENST00000323701 C9orf118A6NHY6 69 aa12.87□□□□□ -0.35
USP39-201ENST00000323701 HSD52Q0P140 79 aa12.87□□□□□ -0.35
USP39-201ENST00000323701 VCX2Q9H322 139 aa12.87□□□□□ -0.35
USP39-201ENST00000323701 A0A096LPF7 62 aa12.87□□□□□ -0.35
USP39-201ENST00000323701 K7EIL1 84 aa12.87□□□□□ -0.35
USP39-201ENST00000323701 SPANXA1Q9NS26 97 aa12.86□□□□□ -0.35
USP39-201ENST00000323701 A0A0J9YXV3 536 aa12.86□□□□□ -0.35
USP39-201ENST00000323701 GTSF1LQ9H1H1 148 aa12.86□□□□□ -0.35
USP39-201ENST00000323701 HTN3P15516 51 aa12.85□□□□□ -0.35
USP39-201ENST00000323701 K7EP34 96 aa12.84□□□□□ -0.35
USP39-201ENST00000323701 PAX4O43316 350 aa12.84□□□□□ -0.35
USP39-201ENST00000323701 C12orf74Q32Q52 190 aa12.84□□□□□ -0.35
USP39-201ENST00000323701 COL7A1Q02388 2944 aa12.84□□□□□ -0.35
USP39-201ENST00000323701 TRAV26-1A0A087WT03 109 aa12.84□□□□□ -0.35
USP39-201ENST00000323701 TMEM238C9JI98 176 aa12.84□□□□□ -0.35
USP39-201ENST00000323701 ATP5G1P05496 136 aa12.84□□□□□ -0.35
USP39-201ENST00000323701 MAPKAPK5-AS1Q8N8E1 139 aa12.84□□□□□ -0.35
USP39-201ENST00000323701 F5H768 121 aa12.83□□□□□ -0.36
USP39-201ENST00000323701 TRBV6-8A0A0A6YYG3 113 aa12.83□□□□□ -0.36
USP39-201ENST00000323701 NAA38Q9BRA0 125 aaKnown RBP12.83□□□□□ -0.36
USP39-201ENST00000323701 CHAC1Q9BUX1 264 aa12.83□□□□□ -0.36
USP39-201ENST00000323701 NFE4Q86UQ8 179 aa12.82□□□□□ -0.36
USP39-201ENST00000323701 TMEM243Q9BU79 118 aa12.82□□□□□ -0.36
USP39-201ENST00000323701 ATP6V0E2Q8NHE4 81 aa12.81□□□□□ -0.36
USP39-201ENST00000323701 TIMM21Q9BVV7 248 aa12.81□□□□□ -0.36
USP39-201ENST00000323701 TRBV25-1A0A075B6N4 114 aa12.81□□□□□ -0.36
USP39-201ENST00000323701 H3BUT2 72 aa12.81□□□□□ -0.36
USP39-201ENST00000323701 TMEM170BQ5T4T1 132 aa12.81□□□□□ -0.36
USP39-201ENST00000323701 KPRPQ5T749 579 aaPredicted RBP12.81□□□□□ -0.36
USP39-201ENST00000323701 MRAPQ8TCY5 172 aa12.81□□□□□ -0.36
USP39-201ENST00000323701 A0A0J9YWU9 116 aa12.8□□□□□ -0.36
USP39-201ENST00000323701 PAPPA-AS1Q5QFB9 102 aa12.8□□□□□ -0.36
USP39-201ENST00000323701 HIGD1BQ9P298 99 aa12.8□□□□□ -0.36
USP39-201ENST00000323701 MRPS36P82909 103 aaKnown RBP12.8□□□□□ -0.36
USP39-201ENST00000323701 GAGE6Q13070 117 aa12.8□□□□□ -0.36
USP39-201ENST00000323701 DEFB121Q5J5C9 76 aa12.8□□□□□ -0.36
USP39-201ENST00000323701 DGAT2L7PQ6IED9 249 aa12.8□□□□□ -0.36
USP39-201ENST00000323701 OR5A1Q8NGJ0 315 aa12.8□□□□□ -0.36
USP39-201ENST00000323701 ZNF22P17026 224 aaPredicted RBP12.79□□□□□ -0.36
USP39-201ENST00000323701 FXYD2P54710 66 aa12.79□□□□□ -0.36
USP39-201ENST00000323701 RAB37Q96AX2 223 aa12.79□□□□□ -0.36
USP39-201ENST00000323701 CDC42SE2Q9NRR3 84 aa12.79□□□□□ -0.36
USP39-201ENST00000323701 E9PLD3 99 aa12.78□□□□□ -0.36
USP39-201ENST00000323701 TSPEAR-AS2P59090 65 aa12.78□□□□□ -0.36
USP39-201ENST00000323701 Q6ZTC4 211 aa12.78□□□□□ -0.36
USP39-201ENST00000323701 CSDC2Q9Y534 153 aaKnown RBP12.78□□□□□ -0.36
USP39-201ENST00000323701 DNAH9Q9NYC9 4486 aa12.77□□□□□ -0.36
USP39-201ENST00000323701 IGLV4-60A0A075B6I1 120 aa12.77□□□□□ -0.36
USP39-201ENST00000323701 UBE2L6O14933 153 aa12.77□□□□□ -0.36
USP39-201ENST00000323701 GCSHP23434 173 aa12.77□□□□□ -0.36
USP39-201ENST00000323701 UBE2D1P51668 147 aa12.77□□□□□ -0.36
USP39-201ENST00000323701 CHCHD5Q9BSY4 110 aa12.77□□□□□ -0.36
USP39-201ENST00000323701 C11orf68Q9H3H3 251 aaKnown RBP12.77□□□□□ -0.36
USP39-201ENST00000323701 A0A1W2PPM0 123 aa12.77□□□□□ -0.37
USP39-201ENST00000323701 IGHV3-64A0A075B6Q5 118 aa12.76□□□□□ -0.37
USP39-201ENST00000323701 COX6A2Q02221 97 aa12.76□□□□□ -0.37
USP39-201ENST00000323701 SPCS1Q9Y6A9 102 aa12.76□□□□□ -0.37
USP39-201ENST00000323701 TMEM223A0PJW6 202 aa12.75□□□□□ -0.37
USP39-201ENST00000323701 NANOS2P60321 138 aaKnown RBP12.74□□□□□ -0.37
USP39-201ENST00000323701 TM2D3Q9BRN9 247 aa12.74□□□□□ -0.37
USP39-201ENST00000323701 TRAV13-1A0A0B4J241 112 aa12.74□□□□□ -0.37
USP39-201ENST00000323701 K7ERJ3 54 aa12.74□□□□□ -0.37
USP39-201ENST00000323701 STAB2Q8WWQ8 2551 aa12.74□□□□□ -0.37
USP39-201ENST00000323701 TINCRA0A1B0GVN0 87 aa12.73□□□□□ -0.37
USP39-201ENST00000323701 FABP2P12104 132 aa12.73□□□□□ -0.37
USP39-201ENST00000323701 Q8N3U1 123 aa12.73□□□□□ -0.37
USP39-201ENST00000323701 H7C423 109 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms