RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 WFDC2Q14508 124 aa10.93□□□□□ -0.66
SF3B4-201ENST00000271628 ZNRF2Q8NHG8 242 aa10.93□□□□□ -0.66
SF3B4-201ENST00000271628 PGPEP1Q9NXJ5 209 aa10.93□□□□□ -0.66
SF3B4-201ENST00000271628 CRYBA4P53673 196 aa10.93□□□□□ -0.66
SF3B4-201ENST00000271628 KRTAP24-1Q3LI83 254 aa10.93□□□□□ -0.66
SF3B4-201ENST00000271628 SLC25A29Q8N8R3 303 aa10.92□□□□□ -0.66
SF3B4-201ENST00000271628 NOTCH3Q9UM47 2321 aa10.92□□□□□ -0.66
SF3B4-201ENST00000271628 TRBV6-4A0A1B0GX49 114 aa10.91□□□□□ -0.66
SF3B4-201ENST00000271628 DAZ4Q86SG3 579 aaKnown RBP10.91□□□□□ -0.66
SF3B4-201ENST00000271628 VCX2Q9H322 139 aa10.91□□□□□ -0.66
SF3B4-201ENST00000271628 DAZ3Q9NR90 486 aaKnown RBP10.91□□□□□ -0.66
SF3B4-201ENST00000271628 CHCHD7Q9BUK0 85 aa10.91□□□□□ -0.66
SF3B4-201ENST00000271628 TRRAPQ9Y4A5 3859 aa10.9□□□□□ -0.66
SF3B4-201ENST00000271628 IGLV4-3A0A075B6K6 122 aa10.9□□□□□ -0.66
SF3B4-201ENST00000271628 J3QQQ9 107 aa10.9□□□□□ -0.66
SF3B4-201ENST00000271628 SPANXA1Q9NS26 97 aa10.9□□□□□ -0.66
SF3B4-201ENST00000271628 PRO0461Q9UI25 63 aa10.9□□□□□ -0.66
SF3B4-201ENST00000271628 LYRM7Q5U5X0 104 aa10.89□□□□□ -0.67
SF3B4-201ENST00000271628 C3orf56Q8N813 242 aa10.89□□□□□ -0.67
SF3B4-201ENST00000271628 X6R8D5 127 aa10.89□□□□□ -0.67
SF3B4-201ENST00000271628 TRGV4A0A0C4DH28 118 aa10.89□□□□□ -0.67
SF3B4-201ENST00000271628 IGHV3-38A0A0C4DH36 116 aa10.89□□□□□ -0.67
SF3B4-201ENST00000271628 IGHV3-30P01768 117 aa10.89□□□□□ -0.67
SF3B4-201ENST00000271628 IGHV3-30-5P0DP03 117 aa10.89□□□□□ -0.67
SF3B4-201ENST00000271628 LGALS3P17931 250 aaKnown RBP10.89□□□□□ -0.67
SF3B4-201ENST00000271628 TSPEAR-AS2P59090 65 aa10.89□□□□□ -0.67
SF3B4-201ENST00000271628 AMELXQ99217 191 aa10.89□□□□□ -0.67
SF3B4-201ENST00000271628 TMEM223A0PJW6 202 aa10.88□□□□□ -0.67
SF3B4-201ENST00000271628 LEPROTO15243 131 aa10.88□□□□□ -0.67
SF3B4-201ENST00000271628 SHISA2Q6UWI4 295 aa10.88□□□□□ -0.67
SF3B4-201ENST00000271628 OPRPNQ99935 248 aaPredicted RBP10.88□□□□□ -0.67
SF3B4-201ENST00000271628 TSPAN13O95857 204 aa10.88□□□□□ -0.67
SF3B4-201ENST00000271628 UBE2D3P61077 147 aa10.88□□□□□ -0.67
SF3B4-201ENST00000271628 UBE2D2P62837 147 aa10.88□□□□□ -0.67
SF3B4-201ENST00000271628 ETDBQ3ZM63 59 aa10.88□□□□□ -0.67
SF3B4-201ENST00000271628 UBE2D4Q9Y2X8 147 aa10.88□□□□□ -0.67
SF3B4-201ENST00000271628 LINC00612Q8N6U2 182 aa10.87□□□□□ -0.67
SF3B4-201ENST00000271628 APOMO95445 188 aa10.86□□□□□ -0.67
SF3B4-201ENST00000271628 BAHCC1Q9P281 2608 aa10.86□□□□□ -0.67
SF3B4-201ENST00000271628 GAGE12JA6NER3 117 aa10.86□□□□□ -0.67
SF3B4-201ENST00000271628 GAGE4Q13068 117 aa10.86□□□□□ -0.67
SF3B4-201ENST00000271628 GAGE5Q13069 117 aa10.86□□□□□ -0.67
SF3B4-201ENST00000271628 FHL2Q14192 279 aa10.86□□□□□ -0.67
SF3B4-201ENST00000271628 SH2D6Q7Z4S9 175 aa10.86□□□□□ -0.67
SF3B4-201ENST00000271628 TIMM21Q9BVV7 248 aa10.86□□□□□ -0.67
SF3B4-201ENST00000271628 GTSF1LQ9H1H1 148 aa10.86□□□□□ -0.67
SF3B4-201ENST00000271628 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.85□□□□□ -0.67
SF3B4-201ENST00000271628 IGKV2-29A2NJV5 120 aaPredicted RBP10.85□□□□□ -0.67
SF3B4-201ENST00000271628 LYRM9A8MSI8 78 aa10.85□□□□□ -0.67
SF3B4-201ENST00000271628 ZNF22P17026 224 aaPredicted RBP10.85□□□□□ -0.67
SF3B4-201ENST00000271628 SMAGPQ0VAQ4 97 aa10.85□□□□□ -0.67
SF3B4-201ENST00000271628 DEFB135Q30KP9 77 aa10.85□□□□□ -0.67
SF3B4-201ENST00000271628 LOC107984156A0A0G2JMH3 177 aa10.85□□□□□ -0.67
SF3B4-201ENST00000271628 CFC1BP0CG36 223 aa10.85□□□□□ -0.67
SF3B4-201ENST00000271628 CFC1P0CG37 223 aa10.85□□□□□ -0.67
SF3B4-201ENST00000271628 IGHV4-30-4P0DP06 118 aa10.85□□□□□ -0.67
SF3B4-201ENST00000271628 DEFB130BP0DP73 79 aa10.85□□□□□ -0.67
SF3B4-201ENST00000271628 DEFB130AP0DP74 79 aa10.85□□□□□ -0.67
SF3B4-201ENST00000271628 ARL17AQ8IVW1 177 aa10.85□□□□□ -0.67
SF3B4-201ENST00000271628 C10orf126Q8N4M7 172 aa10.85□□□□□ -0.67
SF3B4-201ENST00000271628 TRBV20-1A0A075B6N2 111 aa10.84□□□□□ -0.67
SF3B4-201ENST00000271628 ATP6V0E2Q8NHE4 81 aa10.84□□□□□ -0.67
SF3B4-201ENST00000271628 MRPS36P82909 103 aaKnown RBP10.83□□□□□ -0.68
SF3B4-201ENST00000271628 DGAT2L7PQ6IED9 249 aa10.83□□□□□ -0.68
SF3B4-201ENST00000271628 CEMP1Q6PRD7 247 aaPredicted RBP10.83□□□□□ -0.68
SF3B4-201ENST00000271628 FAM104AQ969W3 186 aa10.83□□□□□ -0.68
SF3B4-201ENST00000271628 PRO1854Q9UHT4 67 aa10.83□□□□□ -0.68
SF3B4-201ENST00000271628 FBN1P35555 2871 aaKnown RBP10.83□□□□□ -0.68
SF3B4-201ENST00000271628 GAGE12HA6NDE8 117 aa10.83□□□□□ -0.68
SF3B4-201ENST00000271628 MIFP14174 115 aa10.83□□□□□ -0.68
SF3B4-201ENST00000271628 SIGMAR1Q99720 223 aa10.83□□□□□ -0.68
SF3B4-201ENST00000271628 CSDC2Q9Y534 153 aaKnown RBP10.83□□□□□ -0.68
SF3B4-201ENST00000271628 A0A0J9YXV3 536 aa10.82□□□□□ -0.68
SF3B4-201ENST00000271628 PSMB2P49721 201 aa10.82□□□□□ -0.68
SF3B4-201ENST00000271628 OXLD1Q5BKU9 147 aa10.81□□□□□ -0.68
SF3B4-201ENST00000271628 NTM-AS1Q6ZSK4 140 aa10.81□□□□□ -0.68
SF3B4-201ENST00000271628 MTURNQ8N3F0 131 aa10.81□□□□□ -0.68
SF3B4-201ENST00000271628 SPATA25Q9BR10 227 aa10.81□□□□□ -0.68
SF3B4-201ENST00000271628 TMEM238C9JI98 176 aa10.81□□□□□ -0.68
SF3B4-201ENST00000271628 FAM222AQ5U5X8 452 aa10.81□□□□□ -0.68
SF3B4-201ENST00000271628 PRIMA1Q86XR5 153 aa10.81□□□□□ -0.68
SF3B4-201ENST00000271628 CYSRT1A8MQ03 144 aa10.8□□□□□ -0.68
SF3B4-201ENST00000271628 SCGB1A1P11684 91 aa10.8□□□□□ -0.68
SF3B4-201ENST00000271628 RNF183Q96D59 192 aa10.8□□□□□ -0.68
SF3B4-201ENST00000271628 H7C423 109 aa10.8□□□□□ -0.68
SF3B4-201ENST00000271628 EGFEM1PQ0D2K5 195 aa10.8□□□□□ -0.68
SF3B4-201ENST00000271628 NBEAL2Q6ZNJ1 2754 aa10.79□□□□□ -0.68
SF3B4-201ENST00000271628 LOC100131303A0A0U1RQF7 123 aa10.79□□□□□ -0.68
SF3B4-201ENST00000271628 TINCRA0A1B0GVN0 87 aa10.79□□□□□ -0.68
SF3B4-201ENST00000271628 UBE2L6O14933 153 aa10.79□□□□□ -0.68
SF3B4-201ENST00000271628 SMCPP49901 116 aaPredicted RBP10.79□□□□□ -0.68
SF3B4-201ENST00000271628 FOXI1Q12951 378 aa10.79□□□□□ -0.68
SF3B4-201ENST00000271628 Q6ZUT4 128 aa10.79□□□□□ -0.68
SF3B4-201ENST00000271628 SBSPONQ8IVN8 264 aa10.79□□□□□ -0.68
SF3B4-201ENST00000271628 TMEM243Q9BU79 118 aa10.79□□□□□ -0.68
SF3B4-201ENST00000271628 PRO0255Q9UI72 69 aa10.79□□□□□ -0.68
SF3B4-201ENST00000271628 A0A0B4J2C4 111 aa10.78□□□□□ -0.68
SF3B4-201ENST00000271628 IGHV4-28A0A0C4DH34 117 aa10.78□□□□□ -0.68
SF3B4-201ENST00000271628 A4D1N5 150 aa10.78□□□□□ -0.68
SF3B4-201ENST00000271628 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 102.1 ms