RNA–Protein interactions for RNA: ENST00000228251.8

YBX3-201, Transcript of Y-box binding protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene YBX3, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-201ENST00000228251 GAGE12IP0CL82 117 aa13.59□□□□□ -0.23
YBX3-201ENST00000228251 TRBV6-4A0A1B0GX49 114 aa13.58□□□□□ -0.23
YBX3-201ENST00000228251 LINC00612Q8N6U2 182 aa13.58□□□□□ -0.23
YBX3-201ENST00000228251 CSDC2Q9Y534 153 aaKnown RBP13.58□□□□□ -0.23
YBX3-201ENST00000228251 IGLV5-45A0A087WSX0 123 aa13.58□□□□□ -0.24
YBX3-201ENST00000228251 IGHV3-30P01768 117 aa13.58□□□□□ -0.24
YBX3-201ENST00000228251 LINC00694P0DN24 101 aa13.58□□□□□ -0.24
YBX3-201ENST00000228251 IGHV3-30-5P0DP03 117 aa13.58□□□□□ -0.24
YBX3-201ENST00000228251 CITED1Q99966 193 aa13.58□□□□□ -0.24
YBX3-201ENST00000228251 FLNBO75369 2602 aaKnown RBP13.58□□□□□ -0.24
YBX3-201ENST00000228251 IGHV3-30-3P0DP02 117 aa13.57□□□□□ -0.24
YBX3-201ENST00000228251 FABP2P12104 132 aa13.57□□□□□ -0.24
YBX3-201ENST00000228251 C9orf66Q5T8R8 295 aa13.57□□□□□ -0.24
YBX3-201ENST00000228251 FAM19A3Q7Z5A8 133 aa13.57□□□□□ -0.24
YBX3-201ENST00000228251 C10orf126Q8N4M7 172 aa13.57□□□□□ -0.24
YBX3-201ENST00000228251 SPCS1Q9Y6A9 102 aa13.57□□□□□ -0.24
YBX3-201ENST00000228251 GTSF1LQ9H1H1 148 aa13.56□□□□□ -0.24
YBX3-201ENST00000228251 TRGV2A0A075B6R0 118 aa13.55□□□□□ -0.24
YBX3-201ENST00000228251 IGHV1-58A0A0C4DH39 117 aa13.55□□□□□ -0.24
YBX3-201ENST00000228251 GAGE12JA6NER3 117 aa13.55□□□□□ -0.24
YBX3-201ENST00000228251 TIRAPP58753 221 aa13.55□□□□□ -0.24
YBX3-201ENST00000228251 GAGE4Q13068 117 aa13.55□□□□□ -0.24
YBX3-201ENST00000228251 GAGE5Q13069 117 aa13.55□□□□□ -0.24
YBX3-201ENST00000228251 SRSF9Q13242 221 aaKnown RBP eCLIP13.55□□□□□ -0.24
YBX3-201ENST00000228251 FHL2Q14192 279 aa13.55□□□□□ -0.24
YBX3-201ENST00000228251 GAGE13Q4V321 117 aa13.55□□□□□ -0.24
YBX3-201ENST00000228251 IGHV3-64A0A075B6Q5 118 aa13.55□□□□□ -0.24
YBX3-201ENST00000228251 X6R8D5 127 aa13.55□□□□□ -0.24
YBX3-201ENST00000228251 TRAV8-3A0A0A6YYJ7 113 aa13.54□□□□□ -0.24
YBX3-201ENST00000228251 TMEM238LA0A1B0GVL6 79 aa13.54□□□□□ -0.24
YBX3-201ENST00000228251 A6NJY4 79 aa13.54□□□□□ -0.24
YBX3-201ENST00000228251 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.54□□□□□ -0.24
YBX3-201ENST00000228251 KIR2DL5BQ8NHK3 375 aa13.54□□□□□ -0.24
YBX3-201ENST00000228251 VSIG2Q96IQ7 327 aa13.54□□□□□ -0.24
YBX3-201ENST00000228251 LOC100131303A0A0U1RQF7 123 aa13.53□□□□□ -0.24
YBX3-201ENST00000228251 A0A0J9YXY3 114 aa13.52□□□□□ -0.25
YBX3-201ENST00000228251 LITAFQ99732 161 aa13.52□□□□□ -0.25
YBX3-201ENST00000228251 TEP1Q99973 2627 aaKnown RBP13.52□□□□□ -0.25
YBX3-201ENST00000228251 CDC42SE2Q9NRR3 84 aa13.5□□□□□ -0.25
YBX3-201ENST00000228251 CDKN2A-AS1Q9UH64 79 aa13.5□□□□□ -0.25
YBX3-201ENST00000228251 COX6A2Q02221 97 aa13.5□□□□□ -0.25
YBX3-201ENST00000228251 LINC00242Q5T6M2 205 aa13.5□□□□□ -0.25
YBX3-201ENST00000228251 DGAT2L7PQ6IED9 249 aa13.5□□□□□ -0.25
YBX3-201ENST00000228251 TRGV4A0A0C4DH28 118 aa13.49□□□□□ -0.25
YBX3-201ENST00000228251 SMIM9A6NGZ8 99 aa13.49□□□□□ -0.25
YBX3-201ENST00000228251 SPINK8P0C7L1 97 aa13.49□□□□□ -0.25
YBX3-201ENST00000228251 BAHCC1Q9P281 2608 aa13.49□□□□□ -0.25
YBX3-201ENST00000228251 ZFAND6Q6FIF0 208 aa13.48□□□□□ -0.25
YBX3-201ENST00000228251 TMEM243Q9BU79 118 aa13.48□□□□□ -0.25
YBX3-201ENST00000228251 GEMIN7Q9H840 131 aaKnown RBP13.48□□□□□ -0.25
YBX3-201ENST00000228251 ATRQ13535 2644 aa13.48□□□□□ -0.25
YBX3-201ENST00000228251 IGLV5-39A0A0G2JS06 123 aa13.48□□□□□ -0.25
YBX3-201ENST00000228251 H7C423 109 aa13.48□□□□□ -0.25
YBX3-201ENST00000228251 WIPF1O43516 503 aa13.48□□□□□ -0.25
YBX3-201ENST00000228251 CFC1BP0CG36 223 aa13.48□□□□□ -0.25
YBX3-201ENST00000228251 CFC1P0CG37 223 aa13.48□□□□□ -0.25
YBX3-201ENST00000228251 WFDC9Q8NEX5 89 aa13.48□□□□□ -0.25
YBX3-201ENST00000228251 PGPEP1Q9NXJ5 209 aa13.48□□□□□ -0.25
YBX3-201ENST00000228251 NDUFA12Q9UI09 145 aa13.47□□□□□ -0.25
YBX3-201ENST00000228251 A8MZ25 164 aa13.46□□□□□ -0.25
YBX3-201ENST00000228251 TMEM238C9JI98 176 aa13.46□□□□□ -0.25
YBX3-201ENST00000228251 EIF4EBP3O60516 100 aaPredicted RBP13.46□□□□□ -0.25
YBX3-201ENST00000228251 TSPAN13O95857 204 aa13.46□□□□□ -0.25
YBX3-201ENST00000228251 HERVK_113P63121 156 aa13.46□□□□□ -0.25
YBX3-201ENST00000228251 SMAGPQ0VAQ4 97 aa13.46□□□□□ -0.25
YBX3-201ENST00000228251 OCIAD2Q56VL3 154 aa13.45□□□□□ -0.26
YBX3-201ENST00000228251 RBX1P62877 108 aa13.45□□□□□ -0.26
YBX3-201ENST00000228251 TMEM101Q96IK0 257 aa13.45□□□□□ -0.26
YBX3-201ENST00000228251 SPANXDQ9BXN6 97 aa13.44□□□□□ -0.26
YBX3-201ENST00000228251 SPANXCQ9NY87 97 aa13.44□□□□□ -0.26
YBX3-201ENST00000228251 APOMO95445 188 aa13.43□□□□□ -0.26
YBX3-201ENST00000228251 TRBV6-8A0A0A6YYG3 113 aa13.43□□□□□ -0.26
YBX3-201ENST00000228251 A4D1N5 150 aa13.43□□□□□ -0.26
YBX3-201ENST00000228251 F5H768 121 aa13.43□□□□□ -0.26
YBX3-201ENST00000228251 MUSTN1Q8IVN3 82 aa13.43□□□□□ -0.26
YBX3-201ENST00000228251 NDUFA1O15239 70 aa13.42□□□□□ -0.26
YBX3-201ENST00000228251 DEFB130BP0DP73 79 aa13.42□□□□□ -0.26
YBX3-201ENST00000228251 DEFB130AP0DP74 79 aa13.42□□□□□ -0.26
YBX3-201ENST00000228251 ADAMTSL4-AS1Q5T5F5 129 aa13.42□□□□□ -0.26
YBX3-201ENST00000228251 NBEAL2Q6ZNJ1 2754 aa13.42□□□□□ -0.26
YBX3-201ENST00000228251 SMIM1B2RUZ4 78 aa13.41□□□□□ -0.26
YBX3-201ENST00000228251 TIMM17BO60830 172 aa13.41□□□□□ -0.26
YBX3-201ENST00000228251 TRRAPQ9Y4A5 3859 aa13.41□□□□□ -0.26
YBX3-201ENST00000228251 A0A0B4J2C4 111 aa13.4□□□□□ -0.26
YBX3-201ENST00000228251 UBE2L6O14933 153 aa13.4□□□□□ -0.26
YBX3-201ENST00000228251 RPL24P83731 157 aaKnown RBP13.4□□□□□ -0.26
YBX3-201ENST00000228251 TRAV13-1A0A0B4J241 112 aa13.4□□□□□ -0.26
YBX3-201ENST00000228251 LYRM9A8MSI8 78 aa13.4□□□□□ -0.26
YBX3-201ENST00000228251 PRO1854Q9UHT4 67 aa13.4□□□□□ -0.26
YBX3-201ENST00000228251 PRO0461Q9UI25 63 aa13.4□□□□□ -0.26
YBX3-201ENST00000228251 H3BMG7 143 aa13.38□□□□□ -0.27
YBX3-201ENST00000228251 APOC4P55056 127 aa13.38□□□□□ -0.27
YBX3-201ENST00000228251 MIAQ16674 131 aa13.38□□□□□ -0.27
YBX3-201ENST00000228251 FAM222AQ5U5X8 452 aa13.38□□□□□ -0.27
YBX3-201ENST00000228251 DEFB135Q30KP9 77 aa13.37□□□□□ -0.27
YBX3-201ENST00000228251 F8P00451 2351 aa13.37□□□□□ -0.27
YBX3-201ENST00000228251 IGHV3-33P01772 117 aa13.37□□□□□ -0.27
YBX3-201ENST00000228251 GAGE6Q13070 117 aa13.37□□□□□ -0.27
YBX3-201ENST00000228251 IGLV4-60A0A075B6I1 120 aa13.36□□□□□ -0.27
YBX3-201ENST00000228251 F8W1H4 67 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 97.1 ms