RNA–Protein interactions for RNA: YML107C

PML39, Transcript of Protein required for nuclear retention of unspliced pre-mRNAs, yeast

Gene PML39, Length 1,005 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PML39	YML107C	HIS6	P40545	261 aa		4.66	□□□□□ -1.66
PML39	YML107C	PIP2	P52960	996 aa		4.66	□□□□□ -1.66
PML39	YML107C	TEP1	P53916	434 aa		4.66	□□□□□ -1.66
PML39	YML107C	CEG1	Q01159	459 aa	Predicted RBP	4.66	□□□□□ -1.66
PML39	YML107C	RPS15	Q01855	142 aa	Known RBP	4.66	□□□□□ -1.66
PML39	YML107C	FMP30	Q02883	468 aa		4.66	□□□□□ -1.66
PML39	YML107C	USA1	Q03714	838 aa		4.66	□□□□□ -1.66
PML39	YML107C	ULA1	Q12059	462 aa		4.66	□□□□□ -1.66
PML39	YML107C	CPA2	P03965	1118 aa	Known RBP	4.65	□□□□□ -1.67
PML39	YML107C	MRPL9	P31334	269 aa		4.65	□□□□□ -1.67
PML39	YML107C	PEX2	P32800	271 aa		4.65	□□□□□ -1.67
PML39	YML107C	PUS4	P48567	403 aa	Known RBP	4.65	□□□□□ -1.67
PML39	YML107C	COS12	P53053	380 aa		4.65	□□□□□ -1.67
PML39	YML107C	YGL117W	P53133	265 aa		4.65	□□□□□ -1.67
PML39	YML107C	ARO10	Q06408	635 aa		4.65	□□□□□ -1.67
PML39	YML107C	CRD1	Q07560	283 aa		4.65	□□□□□ -1.67
PML39	YML107C	KOG1	P38873	1557 aa		4.65	□□□□□ -1.67
PML39	YML107C	BNR1	P40450	1375 aa		4.65	□□□□□ -1.67
PML39	YML107C	YPK1	P12688	680 aa	Known RBP	4.64	□□□□□ -1.67
PML39	YML107C	RNR3	P21672	869 aa	Known RBP	4.64	□□□□□ -1.67
PML39	YML107C	YMC1	P32331	307 aa		4.64	□□□□□ -1.67
PML39	YML107C	VPS27	P40343	622 aa	Known RBP	4.64	□□□□□ -1.67
PML39	YML107C	IMA5	P40884	581 aa		4.64	□□□□□ -1.67
PML39	YML107C	ACS1	Q01574	713 aa		4.64	□□□□□ -1.67
PML39	YML107C	VPS64	Q03944	604 aa		4.64	□□□□□ -1.67
PML39	YML107C	ENT2	Q05785	613 aa		4.64	□□□□□ -1.67
PML39	YML107C	HIM1	Q06674	414 aa		4.64	□□□□□ -1.67
PML39	YML107C	AAD3	P25612	363 aa		4.63	□□□□□ -1.67
PML39	YML107C	MSH1	P25846	959 aa		4.63	□□□□□ -1.67
PML39	YML107C	RPS7A	P26786	190 aa	Known RBP	4.63	□□□□□ -1.67
PML39	YML107C	CUE2	P36075	443 aa	Known RBP	4.63	□□□□□ -1.67
PML39	YML107C	SDH8	P38345	138 aa		4.63	□□□□□ -1.67
PML39	YML107C	MAD3	P47074	515 aa		4.63	□□□□□ -1.67
PML39	YML107C	SAP4	P53036	818 aa		4.63	□□□□□ -1.67
PML39	YML107C	TRS31	Q03337	283 aa		4.63	□□□□□ -1.67
PML39	YML107C	AAD4	Q07747	329 aa		4.63	□□□□□ -1.67
PML39	YML107C	APM3	P38153	483 aa		4.62	□□□□□ -1.67
PML39	YML107C	QRI7	P43122	407 aa		4.62	□□□□□ -1.67
PML39	YML107C	POL31	P46957	487 aa		4.62	□□□□□ -1.67
PML39	YML107C	WAR1	Q03631	944 aa		4.62	□□□□□ -1.67
PML39	YML107C	CRT10	Q08226	957 aa		4.62	□□□□□ -1.67
PML39	YML107C	RRP6	Q12149	733 aa	Known RBP	4.62	□□□□□ -1.67
PML39	YML107C	AAC1	P04710	309 aa		4.61	□□□□□ -1.67
PML39	YML107C	RPL7A	P05737	244 aa	Known RBP	4.61	□□□□□ -1.67
PML39	YML107C	HEM1	P09950	548 aa	Predicted RBP	4.61	□□□□□ -1.67
PML39	YML107C	PHO81	P17442	1178 aa		4.61	□□□□□ -1.67
PML39	YML107C	PRE2	P30656	287 aa	Known RBP	4.61	□□□□□ -1.67
PML39	YML107C	MTG2	P38860	518 aa		4.61	□□□□□ -1.67
PML39	YML107C	SNM1	P40993	198 aa		4.61	□□□□□ -1.67
PML39	YML107C	PAP2	P53632	584 aa	Known RBP	4.61	□□□□□ -1.67
PML39	YML107C	ARG7	Q04728	441 aa		4.61	□□□□□ -1.67
PML39	YML107C	RPL7B	Q12213	244 aa	Known RBP	4.61	□□□□□ -1.67
PML39	YML107C	YMR084W	A2P2R3	262 aa		4.6	□□□□□ -1.67
PML39	YML107C	PMA2	P19657	947 aa		4.6	□□□□□ -1.67
PML39	YML107C	CDC5	P32562	705 aa		4.6	□□□□□ -1.67
PML39	YML107C	FLO10	P36170	1169 aa		4.6	□□□□□ -1.67
PML39	YML107C	YPT10	P38146	199 aa		4.6	□□□□□ -1.67
PML39	YML107C	RRP8	P38961	392 aa	Known RBP	4.6	□□□□□ -1.67
PML39	YML107C	STT3	P39007	718 aa	Known RBP	4.6	□□□□□ -1.67
PML39	YML107C	TPM2	P40414	161 aa		4.6	□□□□□ -1.67
PML39	YML107C	FAF1	P40546	346 aa	Predicted RBP	4.6	□□□□□ -1.67
PML39	YML107C	ARA2	Q04212	335 aa		4.6	□□□□□ -1.67
PML39	YML107C	PIF1	P07271	859 aa		4.59	□□□□□ -1.67
PML39	YML107C	MSS18	P08593	268 aa		4.59	□□□□□ -1.67
PML39	YML107C	HOM2	P13663	365 aa	Known RBP	4.59	□□□□□ -1.67
PML39	YML107C	POL3	P15436	1097 aa		4.59	□□□□□ -1.67
PML39	YML107C	YHL041W	P38730	149 aa		4.59	□□□□□ -1.67
PML39	YML107C	OPT1	P40897	799 aa		4.59	□□□□□ -1.67
PML39	YML107C	YJL043W	P47053	257 aa		4.59	□□□□□ -1.67
PML39	YML107C	IMO32	P53219	342 aa		4.59	□□□□□ -1.67
PML39	YML107C	MOT3	P54785	490 aa	Known RBP	4.59	□□□□□ -1.67
PML39	YML107C	AAT1	Q01802	451 aa		4.59	□□□□□ -1.67
PML39	YML107C	CRF1	Q04930	467 aa		4.59	□□□□□ -1.67
PML39	YML107C	AHA1	Q12449	350 aa	Known RBP	4.59	□□□□□ -1.67
PML39	YML107C	YER175W-A	Q8TGU4	54 aa		4.59	□□□□□ -1.67
PML39	YML107C	MIS1	P09440	975 aa	Known RBP	4.58	□□□□□ -1.68
PML39	YML107C	SEC18	P18759	758 aa	Known RBP	4.58	□□□□□ -1.68
PML39	YML107C	PRP45	P28004	379 aa	Predicted RBP	4.58	□□□□□ -1.68
PML39	YML107C	SWC3	P31376	625 aa		4.58	□□□□□ -1.68
PML39	YML107C	RPC34	P32910	317 aa		4.58	□□□□□ -1.68
PML39	YML107C	LAS21	P40367	830 aa		4.58	□□□□□ -1.68
PML39	YML107C	CAB2	P40506	365 aa		4.58	□□□□□ -1.68
PML39	YML107C	YFL015C	P43578	164 aa		4.58	□□□□□ -1.68
PML39	YML107C	RTS3	P53289	263 aa		4.58	□□□□□ -1.68
PML39	YML107C	NDJ1	Q12366	352 aa		4.58	□□□□□ -1.68
PML39	YML107C	AI5_ALPHA	Q9ZZX1	630 aa		4.58	□□□□□ -1.68
PML39	YML107C	SEC3	P33332	1336 aa	Known RBP	4.57	□□□□□ -1.68
PML39	YML107C	ERG11	P10614	530 aa		4.57	□□□□□ -1.68
PML39	YML107C	SIR1	P21691	654 aa		4.57	□□□□□ -1.68
PML39	YML107C	YCR061W	P25639	631 aa		4.57	□□□□□ -1.68
PML39	YML107C	ORC2	P32833	620 aa		4.57	□□□□□ -1.68
PML39	YML107C	ARB1	P40024	610 aa	Known RBP	4.57	□□□□□ -1.68
PML39	YML107C	MAM1	P40065	302 aa		4.57	□□□□□ -1.68
PML39	YML107C	TAX4	P47030	604 aa		4.57	□□□□□ -1.68
PML39	YML107C	COG2	P53271	262 aa		4.57	□□□□□ -1.68
PML39	YML107C	UBX4	P54730	416 aa		4.57	□□□□□ -1.68
PML39	YML107C	ATG21	Q02887	496 aa		4.57	□□□□□ -1.68
PML39	YML107C	MRI1	Q06489	411 aa	Known RBP	4.57	□□□□□ -1.68
PML39	YML107C	BRE1	Q07457	700 aa	Known RBP	4.57	□□□□□ -1.68
PML39	YML107C	IWR1	Q07532	353 aa	Predicted RBP	4.57	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 32.4 ms