RNA–Protein interactions for RNA: YHR088W

RPF1, Transcript of Protein involved in assembly and export of the large ribosomal subunit, yeastyeast

Gene RPF1, Length 888 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPF1YHR088W YEL077W-AP0CX95 160 aa3.7□□□□□ -1.82
RPF1YHR088W YGR296C-BP0CX96 160 aa3.7□□□□□ -1.82
RPF1YHR088W YPL283W-BP0CX97 160 aa3.7□□□□□ -1.82
RPF1YHR088W YPR204C-AP0CX98 160 aa3.7□□□□□ -1.82
RPF1YHR088W DSS4P32601 143 aa3.7□□□□□ -1.82
RPF1YHR088W FAT1P38225 669 aa3.7□□□□□ -1.82
RPF1YHR088W MNN1P39106 762 aa3.7□□□□□ -1.82
RPF1YHR088W LAS21P40367 830 aa3.7□□□□□ -1.82
RPF1YHR088W CIR1P42940 261 aa3.7□□□□□ -1.82
RPF1YHR088W PCL8Q08966 492 aa3.7□□□□□ -1.82
RPF1YHR088W YOR111WQ99210 232 aa3.7□□□□□ -1.82
RPF1YHR088W ADR1P07248 1323 aa3.7□□□□□ -1.82
RPF1YHR088W YMR085WP0CF18 432 aa3.69□□□□□ -1.82
RPF1YHR088W CDC5P32562 705 aa3.69□□□□□ -1.82
RPF1YHR088W SRP68P38687 599 aaKnown RBP3.69□□□□□ -1.82
RPF1YHR088W CCT4P39078 528 aaKnown RBP3.69□□□□□ -1.82
RPF1YHR088W RNR4P49723 345 aaKnown RBP3.69□□□□□ -1.82
RPF1YHR088W DNM1P54861 757 aa3.69□□□□□ -1.82
RPF1YHR088W HER1Q12276 1246 aa3.69□□□□□ -1.82
RPF1YHR088W YPK1P12688 680 aaKnown RBP3.68□□□□□ -1.82
RPF1YHR088W CWH43P25618 953 aa3.68□□□□□ -1.82
RPF1YHR088W COQ3P27680 312 aa3.68□□□□□ -1.82
RPF1YHR088W RMA1P36001 430 aaKnown RBP3.68□□□□□ -1.82
RPF1YHR088W RNH70P53331 553 aa3.68□□□□□ -1.82
RPF1YHR088W VTC3Q02725 835 aa3.68□□□□□ -1.82
RPF1YHR088W UME1Q03010 460 aa3.68□□□□□ -1.82
RPF1YHR088W CYK3Q07533 885 aa3.68□□□□□ -1.82
RPF1YHR088W SRL1Q08673 210 aa3.68□□□□□ -1.82
RPF1YHR088W BUD7Q08754 746 aa3.68□□□□□ -1.82
RPF1YHR088W NOP56Q12460 504 aaKnown RBP RIP-Chip data3.68□□□□□ -1.82not detected
RPF1YHR088W VPS5Q92331 675 aa3.68□□□□□ -1.82
RPF1YHR088W AIM44Q99299 758 aa3.68□□□□□ -1.82
RPF1YHR088W RPS21AP0C0V8 87 aaKnown RBP3.67□□□□□ -1.82
RPF1YHR088W PCK1P10963 549 aa3.67□□□□□ -1.82
RPF1YHR088W GCS1P35197 352 aa3.67□□□□□ -1.82
RPF1YHR088W SDH8P38345 138 aa3.67□□□□□ -1.82
RPF1YHR088W YAT2P40017 923 aa3.67□□□□□ -1.82
RPF1YHR088W MRN1Q08925 612 aaKnown RBP RIP-Chip data3.67□□□□□ -1.82not detected
RPF1YHR088W PNO1Q99216 274 aaKnown RBP3.67□□□□□ -1.82
RPF1YHR088W AIM17P23180 465 aaKnown RBP3.66□□□□□ -1.82
RPF1YHR088W ATO2P32907 282 aa3.66□□□□□ -1.82
RPF1YHR088W NMD2P38798 1089 aaKnown RBP3.66□□□□□ -1.82
RPF1YHR088W TOM71P38825 639 aaKnown RBP3.66□□□□□ -1.82
RPF1YHR088W MAM1P40065 302 aa3.66□□□□□ -1.82
RPF1YHR088W NOP2P40991 618 aaKnown RBP3.66□□□□□ -1.82
RPF1YHR088W RAD33Q04231 177 aa3.66□□□□□ -1.82
RPF1YHR088W CHO2P05374 869 aaKnown RBP3.65□□□□□ -1.83
RPF1YHR088W ILS1P09436 1072 aaKnown RBP3.65□□□□□ -1.83
RPF1YHR088W YEL076C-AP0CX16 216 aa3.65□□□□□ -1.83
RPF1YHR088W YLR464WP0CX17 216 aa3.65□□□□□ -1.83
RPF1YHR088W MAK32P23060 363 aa3.65□□□□□ -1.83
RPF1YHR088W HXT4P32467 576 aa3.65□□□□□ -1.83
RPF1YHR088W FTH1P38310 465 aa3.65□□□□□ -1.83
RPF1YHR088W YEL076CP39971 216 aa3.65□□□□□ -1.83
RPF1YHR088W COG2P53271 262 aa3.65□□□□□ -1.83
RPF1YHR088W NGL1Q08213 363 aaKnown RBP3.65□□□□□ -1.83
RPF1YHR088W YCP4P25349 247 aaKnown RBP3.64□□□□□ -1.83
RPF1YHR088W MTG2P38860 518 aa3.64□□□□□ -1.83
RPF1YHR088W MDV1P47025 714 aa3.64□□□□□ -1.83
RPF1YHR088W MDR1P53258 950 aa3.64□□□□□ -1.83
RPF1YHR088W BOP3P53958 396 aa3.64□□□□□ -1.83
RPF1YHR088W RPL15BP54780 204 aaPredicted RBP3.64□□□□□ -1.83
RPF1YHR088W ATX2Q12067 313 aa3.64□□□□□ -1.83
RPF1YHR088W UBX3Q12229 455 aa3.64□□□□□ -1.83
RPF1YHR088W NUP145P49687 1317 aa3.64□□□□□ -1.83
RPF1YHR088W YPT1P01123 206 aaKnown RBP3.63□□□□□ -1.83
RPF1YHR088W PLC1P32383 869 aa3.63□□□□□ -1.83
RPF1YHR088W GPP1P41277 250 aaKnown RBP3.63□□□□□ -1.83
RPF1YHR088W YNL092WP53934 400 aa3.63□□□□□ -1.83
RPF1YHR088W SKY1Q03656 742 aa3.63□□□□□ -1.83
RPF1YHR088W GDA1P32621 518 aa3.62□□□□□ -1.83
RPF1YHR088W KES1P35844 434 aaKnown RBP3.62□□□□□ -1.83
RPF1YHR088W PEA2P40091 420 aa3.62□□□□□ -1.83
RPF1YHR088W IRC5P43610 853 aa3.62□□□□□ -1.83
RPF1YHR088W DUG1P43616 481 aaKnown RBP3.62□□□□□ -1.83
RPF1YHR088W SNU56Q03782 492 aaKnown RBP3.62□□□□□ -1.83
RPF1YHR088W GRS2Q06817 618 aa3.62□□□□□ -1.83
RPF1YHR088W KGD2P19262 463 aaPredicted RBP3.61□□□□□ -1.83
RPF1YHR088W PRP45P28004 379 aaPredicted RBP3.61□□□□□ -1.83
RPF1YHR088W SSP120P39931 234 aaKnown RBP3.61□□□□□ -1.83
RPF1YHR088W YIR016WP40572 265 aa3.61□□□□□ -1.83
RPF1YHR088W CIN1P40987 1014 aa3.61□□□□□ -1.83
RPF1YHR088W MAF1P41910 395 aa3.61□□□□□ -1.83
RPF1YHR088W LYS20P48570 428 aaKnown RBP3.61□□□□□ -1.83
RPF1YHR088W GPG1P53130 126 aa3.61□□□□□ -1.83
RPF1YHR088W YNR029CP53729 429 aaKnown RBP3.61□□□□□ -1.83
RPF1YHR088W SNA4Q07549 140 aa3.61□□□□□ -1.83
RPF1YHR088W FAP7Q12055 197 aaPredicted RBP3.61□□□□□ -1.83
RPF1YHR088W GET3Q12154 354 aaKnown RBP3.61□□□□□ -1.83
RPF1YHR088W RPT3P33298 428 aaKnown RBP3.6□□□□□ -1.83
RPF1YHR088W AAT1Q01802 451 aa3.6□□□□□ -1.83
RPF1YHR088W YPR027CQ12079 277 aa3.6□□□□□ -1.83
RPF1YHR088W LYS21Q12122 440 aaKnown RBP3.6□□□□□ -1.83
RPF1YHR088W LCB4Q12246 624 aa3.6□□□□□ -1.83
RPF1YHR088W RMP1Q12530 201 aa3.6□□□□□ -1.83
RPF1YHR088W IMD2P38697 523 aaKnown RBP3.59□□□□□ -1.83
RPF1YHR088W RTT107P38850 1070 aa3.59□□□□□ -1.83
RPF1YHR088W FLO5P38894 1075 aa3.59□□□□□ -1.83
RPF1YHR088W YGR237CP50089 785 aa3.59□□□□□ -1.83
RPF1YHR088W IMD3P50095 523 aaKnown RBP3.59□□□□□ -1.83
Retrieved 100 of 5,963 RNA–protein pairs in 38.3 ms