RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	PUG1	P40100	303 aa		5.45	□□□□□ -1.54
CAF16	YFL028C	YIL077C	P40508	320 aa		5.45	□□□□□ -1.54
CAF16	YFL028C	SMK1	P41808	388 aa		5.45	□□□□□ -1.54
CAF16	YFL028C	RIM8	P53179	542 aa		5.45	□□□□□ -1.54
CAF16	YFL028C	CPR6	P53691	371 aa	Known RBP	5.45	□□□□□ -1.54
CAF16	YFL028C	ACS1	Q01574	713 aa		5.45	□□□□□ -1.54
CAF16	YFL028C	YMR018W	Q04364	514 aa		5.45	□□□□□ -1.54
CAF16	YFL028C	TRI1	Q05024	226 aa		5.45	□□□□□ -1.54
CAF16	YFL028C	CDA2	Q06703	312 aa		5.45	□□□□□ -1.54
CAF16	YFL028C	NEW1	Q08972	1196 aa	Known RBP	5.45	□□□□□ -1.54
CAF16	YFL028C	AIM41	Q12032	185 aa		5.45	□□□□□ -1.54
CAF16	YFL028C	ENT1	Q12518	454 aa		5.45	□□□□□ -1.54
CAF16	YFL028C	NUC1	P08466	329 aa		5.44	□□□□□ -1.54
CAF16	YFL028C	MET3	P08536	511 aa		5.44	□□□□□ -1.54
CAF16	YFL028C	CAF20	P12962	161 aa	Known RBP	5.44	□□□□□ -1.54
CAF16	YFL028C	PRP45	P28004	379 aa	Predicted RBP	5.44	□□□□□ -1.54
CAF16	YFL028C	MVD1	P32377	396 aa	Known RBP	5.44	□□□□□ -1.54
CAF16	YFL028C	RPN12	P32496	274 aa		5.44	□□□□□ -1.54
CAF16	YFL028C	EHT1	P38295	451 aa		5.44	□□□□□ -1.54
CAF16	YFL028C	COS111	P38308	924 aa		5.44	□□□□□ -1.54
CAF16	YFL028C	SFB3	P38810	929 aa		5.44	□□□□□ -1.54
CAF16	YFL028C	AMA1	P50082	593 aa		5.44	□□□□□ -1.54
CAF16	YFL028C	MCM6	P53091	1017 aa	Known RBP	5.44	□□□□□ -1.54
CAF16	YFL028C	PRP43	P53131	767 aa	Known RBP	5.44	□□□□□ -1.54
CAF16	YFL028C	MRPL13	Q02204	264 aa		5.44	□□□□□ -1.54
CAF16	YFL028C	TIM50	Q02776	476 aa		5.44	□□□□□ -1.54
CAF16	YFL028C	DLT1	Q04216	342 aa		5.44	□□□□□ -1.54
CAF16	YFL028C	LEU2	P04173	364 aa	Predicted RBP	5.43	□□□□□ -1.54
CAF16	YFL028C	TRP4	P07285	380 aa	Predicted RBP	5.43	□□□□□ -1.54
CAF16	YFL028C	MIS1	P09440	975 aa	Known RBP	5.43	□□□□□ -1.54
CAF16	YFL028C	NCP1	P16603	691 aa	Known RBP	5.43	□□□□□ -1.54
CAF16	YFL028C	CLB4	P24871	460 aa		5.43	□□□□□ -1.54
CAF16	YFL028C	SWI4	P25302	1093 aa	Known RBP	5.43	□□□□□ -1.54
CAF16	YFL028C	YCL049C	P25577	312 aa		5.43	□□□□□ -1.54
CAF16	YFL028C	FEN2	P25621	512 aa	Known RBP	5.43	□□□□□ -1.54
CAF16	YFL028C	ELO3	P40319	345 aa		5.43	□□□□□ -1.54
CAF16	YFL028C	PSF2	P40359	213 aa		5.43	□□□□□ -1.54
CAF16	YFL028C	HOS4	P40480	1083 aa		5.43	□□□□□ -1.54
CAF16	YFL028C	BAP3	P41815	604 aa		5.43	□□□□□ -1.54
CAF16	YFL028C	YDL183C	P48569	320 aa		5.43	□□□□□ -1.54
CAF16	YFL028C	EIS1	Q05050	843 aa	Known RBP	5.43	□□□□□ -1.54
CAF16	YFL028C	YFT2	Q06676	274 aa		5.43	□□□□□ -1.54
CAF16	YFL028C	IWR1	Q07532	353 aa	Predicted RBP	5.43	□□□□□ -1.54
CAF16	YFL028C	AAD4	Q07747	329 aa		5.43	□□□□□ -1.54
CAF16	YFL028C	PCK1	P10963	549 aa		5.42	□□□□□ -1.54
CAF16	YFL028C	SIR1	P21691	654 aa		5.42	□□□□□ -1.54
CAF16	YFL028C	CHS3	P29465	1165 aa		5.42	□□□□□ -1.54
CAF16	YFL028C	BCS1	P32839	456 aa		5.42	□□□□□ -1.54
CAF16	YFL028C	YBR053C	P38235	358 aa		5.42	□□□□□ -1.54
CAF16	YFL028C	PIG2	P40187	538 aa		5.42	□□□□□ -1.54
CAF16	YFL028C	FAF1	P40546	346 aa	Predicted RBP	5.42	□□□□□ -1.54
CAF16	YFL028C	MNT3	P40549	630 aa		5.42	□□□□□ -1.54
CAF16	YFL028C	RFX1	P48743	811 aa		5.42	□□□□□ -1.54
CAF16	YFL028C	ADE3	P07245	946 aa	Known RBP	5.41	□□□□□ -1.54
CAF16	YFL028C	RPS24A	P0CX31	135 aa	Known RBP	5.41	□□□□□ -1.54
CAF16	YFL028C	RPS24B	P0CX32	135 aa	Known RBP	5.41	□□□□□ -1.54
CAF16	YFL028C	PRE10	P21242	288 aa	Known RBP RIP-Chip data	5.41	□□□□□ -1.54	not detected
CAF16	YFL028C	RIT1	P23796	513 aa		5.41	□□□□□ -1.54
CAF16	YFL028C	RER1	P25560	188 aa		5.41	□□□□□ -1.54
CAF16	YFL028C	XRS2	P33301	854 aa		5.41	□□□□□ -1.54
CAF16	YFL028C	SLC1	P33333	303 aa		5.41	□□□□□ -1.54
CAF16	YFL028C	HIS7	P33734	552 aa	Known RBP	5.41	□□□□□ -1.54
CAF16	YFL028C	YBR138C	P38277	524 aa		5.41	□□□□□ -1.54
CAF16	YFL028C	TMN3	P40071	706 aa		5.41	□□□□□ -1.54
CAF16	YFL028C	RAD26	P40352	1085 aa		5.41	□□□□□ -1.54
CAF16	YFL028C	GSM1	P42950	618 aa		5.41	□□□□□ -1.54
CAF16	YFL028C	MNN10	P50108	393 aa	Known RBP	5.41	□□□□□ -1.54
CAF16	YFL028C	OPY2	Q06810	360 aa		5.41	□□□□□ -1.54
CAF16	YFL028C	CRD1	Q07560	283 aa		5.41	□□□□□ -1.54
CAF16	YFL028C	YOL087C	Q99247	1116 aa		5.41	□□□□□ -1.54
CAF16	YFL028C	URB1	P34241	1764 aa	Known RBP	5.41	□□□□□ -1.54
CAF16	YFL028C	TUF1	P02992	437 aa	Known RBP	5.4	□□□□□ -1.54
CAF16	YFL028C	MTF2	P10849	440 aa		5.4	□□□□□ -1.54
CAF16	YFL028C	PRP6	P19735	899 aa	Predicted RBP	5.4	□□□□□ -1.54
CAF16	YFL028C	STE11	P23561	717 aa		5.4	□□□□□ -1.54
CAF16	YFL028C	RRN3	P36070	627 aa		5.4	□□□□□ -1.54
CAF16	YFL028C	STB5	P38699	743 aa		5.4	□□□□□ -1.54
CAF16	YFL028C	BCD1	P38772	366 aa		5.4	□□□□□ -1.54
CAF16	YFL028C	MEP3	P53390	489 aa		5.4	□□□□□ -1.54
CAF16	YFL028C	ARA2	Q04212	335 aa		5.4	□□□□□ -1.54
CAF16	YFL028C	PDS5	Q04264	1277 aa		5.4	□□□□□ -1.54
CAF16	YFL028C	ENT2	Q05785	613 aa		5.4	□□□□□ -1.54
CAF16	YFL028C	IMH1	Q06704	911 aa	Known RBP	5.4	□□□□□ -1.54
CAF16	YFL028C	IRC13	Q08630	104 aa		5.4	□□□□□ -1.54
CAF16	YFL028C	CHS5	Q12114	671 aa	Known RBP	5.4	□□□□□ -1.54
CAF16	YFL028C	TRM13	Q12383	476 aa		5.4	□□□□□ -1.54
CAF16	YFL028C	FKS3	Q04952	1785 aa		5.39	□□□□□ -1.55
CAF16	YFL028C	YLR358C	O13565	187 aa		5.39	□□□□□ -1.55
CAF16	YFL028C	SEC12	P11655	471 aa		5.39	□□□□□ -1.55
CAF16	YFL028C	RPS7A	P26786	190 aa	Known RBP	5.39	□□□□□ -1.55
CAF16	YFL028C	IFA38	P38286	347 aa		5.39	□□□□□ -1.55
CAF16	YFL028C	HRB1	P38922	454 aa	Known RBP RIP-Chip data	5.39	□□□□□ -1.55	not detected
CAF16	YFL028C	KAP123	P40069	1113 aa	Known RBP	5.39	□□□□□ -1.55
CAF16	YFL028C	VFA1	P40080	203 aa		5.39	□□□□□ -1.55
CAF16	YFL028C	BNA1	P47096	177 aa		5.39	□□□□□ -1.55
CAF16	YFL028C	PAN2	P53010	1115 aa	Predicted RBP	5.39	□□□□□ -1.55
CAF16	YFL028C	FDC1	Q03034	503 aa		5.39	□□□□□ -1.55
CAF16	YFL028C	YDR056C	Q12025	205 aa		5.39	□□□□□ -1.55
CAF16	YFL028C	RRI2	Q12348	645 aa		5.39	□□□□□ -1.55
CAF16	YFL028C	ZRT2	Q12436	422 aa		5.39	□□□□□ -1.55

Retrieved 100 of 5,963 RNA–protein pairs in 11.7 ms