RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 WWC3Q9ULE0 1092 aa8.18□□□□□ -1.1
VPS29-210ENST00000552130 PCDHGB7Q9Y5F8 929 aa8.18□□□□□ -1.1
VPS29-210ENST00000552130 CCDC189A1A4V9 331 aa8.17□□□□□ -1.1
VPS29-210ENST00000552130 NDUFB5O43674 189 aa8.17□□□□□ -1.1
VPS29-210ENST00000552130 WNT11O96014 354 aa8.17□□□□□ -1.1
VPS29-210ENST00000552130 MCCP23508 829 aa8.17□□□□□ -1.1
VPS29-210ENST00000552130 EVA1CP58658 441 aa8.17□□□□□ -1.1
VPS29-210ENST00000552130 RACK1P63244 317 aaKnown RBP8.17□□□□□ -1.1
VPS29-210ENST00000552130 UBE4AQ14139 1066 aa8.17□□□□□ -1.1
VPS29-210ENST00000552130 DSC3Q14574 896 aa8.17□□□□□ -1.1
VPS29-210ENST00000552130 DUOXA2Q1HG44 320 aa8.17□□□□□ -1.1
VPS29-210ENST00000552130 CEP120Q8N960 986 aa8.17□□□□□ -1.1
VPS29-210ENST00000552130 MKL1Q969V6 931 aa8.17□□□□□ -1.1
VPS29-210ENST00000552130 PBX4Q9BYU1 374 aa8.17□□□□□ -1.1
VPS29-210ENST00000552130 DDX3YO15523 660 aaKnown RBP8.16□□□□□ -1.1
VPS29-210ENST00000552130 PLCB3Q01970 1234 aa8.16□□□□□ -1.1
VPS29-210ENST00000552130 WDR78Q5VTH9 848 aa8.16□□□□□ -1.1
VPS29-210ENST00000552130 CCSAPQ6IQ19 270 aaPredicted RBP8.16□□□□□ -1.1
VPS29-210ENST00000552130 SHKBP1Q8TBC3 707 aa8.16□□□□□ -1.1
VPS29-210ENST00000552130 KLHDC7BQ96G42 594 aa8.16□□□□□ -1.1
VPS29-210ENST00000552130 SENP7Q9BQF6 1050 aa8.16□□□□□ -1.1
VPS29-210ENST00000552130 IER2Q9BTL4 223 aa8.16□□□□□ -1.1
VPS29-210ENST00000552130 PCGF6Q9BYE7 350 aa8.16□□□□□ -1.1
VPS29-210ENST00000552130 FAM13BQ9NYF5 915 aa8.16□□□□□ -1.1
VPS29-210ENST00000552130 ATP2B2Q01814 1243 aa8.15□□□□□ -1.1
VPS29-210ENST00000552130 EHHADHQ08426 723 aa8.15□□□□□ -1.1
VPS29-210ENST00000552130 MAP9Q49MG5 647 aa8.15□□□□□ -1.1
VPS29-210ENST00000552130 USP48Q86UV5 1035 aa8.15□□□□□ -1.1
VPS29-210ENST00000552130 TMC1Q8TDI8 760 aa8.15□□□□□ -1.1
VPS29-210ENST00000552130 UBASH3BQ8TF42 649 aa8.15□□□□□ -1.1
VPS29-210ENST00000552130 SH2B1Q9NRF2 756 aaPredicted RBP8.15□□□□□ -1.1
VPS29-210ENST00000552130 FAM13AO94988 1023 aa8.14□□□□□ -1.11
VPS29-210ENST00000552130 PREPP48147 710 aa8.14□□□□□ -1.11
VPS29-210ENST00000552130 GYS2P54840 703 aa8.14□□□□□ -1.11
VPS29-210ENST00000552130 OS9Q13438 667 aaPredicted RBP8.14□□□□□ -1.11
VPS29-210ENST00000552130 SAFB2Q14151 953 aaKnown RBP eCLIP8.14□□□□□ -1.11
VPS29-210ENST00000552130 ANKRD34AQ69YU3 496 aa8.14□□□□□ -1.11
VPS29-210ENST00000552130 FERMT3Q86UX7 667 aa8.14□□□□□ -1.11
VPS29-210ENST00000552130 WNT8BQ93098 351 aa8.14□□□□□ -1.11
VPS29-210ENST00000552130 RELTQ969Z4 430 aa8.14□□□□□ -1.11
VPS29-210ENST00000552130 CEP89Q96ST8 783 aa8.14□□□□□ -1.11
VPS29-210ENST00000552130 POP1Q99575 1024 aaKnown RBP8.14□□□□□ -1.11
VPS29-210ENST00000552130 SEC31BQ9NQW1 1179 aa8.14□□□□□ -1.11
VPS29-210ENST00000552130 HIF3AQ9Y2N7 669 aa8.14□□□□□ -1.11
VPS29-210ENST00000552130 EID1Q9Y6B2 187 aa8.14□□□□□ -1.11
VPS29-210ENST00000552130 EXOC5O00471 708 aa8.13□□□□□ -1.11
VPS29-210ENST00000552130 CYP2E1P05181 493 aaPredicted RBP8.13□□□□□ -1.11
VPS29-210ENST00000552130 VIL1P09327 827 aaKnown RBP8.13□□□□□ -1.11
VPS29-210ENST00000552130 BMP3P12645 472 aa8.13□□□□□ -1.11
VPS29-210ENST00000552130 ATF4P18848 351 aaPredicted RBP8.13□□□□□ -1.11
VPS29-210ENST00000552130 FZD5Q13467 585 aa8.13□□□□□ -1.11
VPS29-210ENST00000552130 FAM117BQ6P1L5 589 aa8.13□□□□□ -1.11
VPS29-210ENST00000552130 CAPN12Q6ZSI9 719 aa8.13□□□□□ -1.11
VPS29-210ENST00000552130 BEND4Q6ZU67 534 aa8.13□□□□□ -1.11
VPS29-210ENST00000552130 HELQQ8TDG4 1101 aa8.13□□□□□ -1.11
VPS29-210ENST00000552130 IL17RAQ96F46 866 aa8.13□□□□□ -1.11
VPS29-210ENST00000552130 SRPK1Q96SB4 655 aaKnown RBP8.13□□□□□ -1.11
VPS29-210ENST00000552130 ABI2Q9NYB9 513 aaPredicted RBP8.13□□□□□ -1.11
VPS29-210ENST00000552130 FNDC3AQ9Y2H6 1198 aaKnown RBP8.13□□□□□ -1.11
VPS29-210ENST00000552130 ARID1BQ8NFD5 2236 aaPredicted RBP8.13□□□□□ -1.11
VPS29-210ENST00000552130 CCER2I3L3R5 266 aa8.12□□□□□ -1.11
VPS29-210ENST00000552130 CDC45O75419 566 aa8.12□□□□□ -1.11
VPS29-210ENST00000552130 NPR3P17342 541 aa8.12□□□□□ -1.11
VPS29-210ENST00000552130 PTPRAP18433 802 aa8.12□□□□□ -1.11
VPS29-210ENST00000552130 BDNFP23560 247 aa8.12□□□□□ -1.11
VPS29-210ENST00000552130 CDC25BP30305 580 aa8.12□□□□□ -1.11
VPS29-210ENST00000552130 ZAP70P43403 619 aa8.12□□□□□ -1.11
VPS29-210ENST00000552130 GJA8P48165 433 aa8.12□□□□□ -1.11
VPS29-210ENST00000552130 TTC39BQ5VTQ0 682 aaPredicted RBP8.12□□□□□ -1.11
VPS29-210ENST00000552130 FAM43BQ6ZT52 329 aaPredicted RBP8.12□□□□□ -1.11
VPS29-210ENST00000552130 AMOTL1Q8IY63 956 aa8.12□□□□□ -1.11
VPS29-210ENST00000552130 CRELD1Q96HD1 420 aa8.12□□□□□ -1.11
VPS29-210ENST00000552130 CITED4Q96RK1 184 aa8.12□□□□□ -1.11
VPS29-210ENST00000552130 OSGEPQ9NPF4 335 aa8.12□□□□□ -1.11
VPS29-210ENST00000552130 FBXO9Q9UK97 447 aaPredicted RBP8.12□□□□□ -1.11
VPS29-210ENST00000552130 THRAP3Q9Y2W1 955 aaKnown RBP8.12□□□□□ -1.11
VPS29-210ENST00000552130 H3BRJ5 948 aa8.11□□□□□ -1.11
VPS29-210ENST00000552130 NFKBIEO00221 500 aa8.11□□□□□ -1.11
VPS29-210ENST00000552130 PLIN1O60240 522 aa8.11□□□□□ -1.11
VPS29-210ENST00000552130 LIG1P18858 919 aa8.11□□□□□ -1.11
VPS29-210ENST00000552130 HOXA10P31260 410 aaPredicted RBP8.11□□□□□ -1.11
VPS29-210ENST00000552130 PIP4K2BP78356 416 aa8.11□□□□□ -1.11
VPS29-210ENST00000552130 DMRTB1Q96MA1 342 aa8.11□□□□□ -1.11
VPS29-210ENST00000552130 SETDB2Q96T68 719 aa8.11□□□□□ -1.11
VPS29-210ENST00000552130 RNF208Q9H0X6 261 aa8.11□□□□□ -1.11
VPS29-210ENST00000552130 SWAP70Q9UH65 585 aa8.11□□□□□ -1.11
VPS29-210ENST00000552130 SFMBT1Q9UHJ3 866 aa8.11□□□□□ -1.11
VPS29-210ENST00000552130 MEGF11A6BM72 1044 aa8.1□□□□□ -1.11
VPS29-210ENST00000552130 ZBTB39O15060 712 aa8.1□□□□□ -1.11
VPS29-210ENST00000552130 KIF3BO15066 747 aa8.1□□□□□ -1.11
VPS29-210ENST00000552130 GNALP38405 381 aa8.1□□□□□ -1.11
VPS29-210ENST00000552130 CHMP4BP1P59074 171 aa8.1□□□□□ -1.11
VPS29-210ENST00000552130 DHX8Q14562 1220 aaKnown RBP8.1□□□□□ -1.11
VPS29-210ENST00000552130 NAP1L4Q99733 375 aaKnown RBP8.1□□□□□ -1.11
VPS29-210ENST00000552130 C12orf49Q9H741 205 aa8.1□□□□□ -1.11
VPS29-210ENST00000552130 JADE2Q9NQC1 790 aa8.1□□□□□ -1.11
VPS29-210ENST00000552130 FANCLQ9NW38 375 aa8.1□□□□□ -1.11
VPS29-210ENST00000552130 SIRPGQ9P1W8 387 aa8.1□□□□□ -1.11
VPS29-210ENST00000552130 SALL4Q9UJQ4 1053 aa8.1□□□□□ -1.11
VPS29-210ENST00000552130 LDHAP00338 332 aaKnown RBP8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms