RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 TSPYL4Q9UJ04 414 aa6.45□□□□□ -1.38
LIMA1-203ENST00000547825 DDX60Q8IY21 1712 aaKnown RBP6.45□□□□□ -1.38
LIMA1-203ENST00000547825 TMEM229AB2RXF0 380 aa6.45□□□□□ -1.38
LIMA1-203ENST00000547825 SMC2O95347 1197 aa6.45□□□□□ -1.38
LIMA1-203ENST00000547825 CCDC192P0DO97 292 aa6.45□□□□□ -1.38
LIMA1-203ENST00000547825 NOLC1Q14978 699 aaKnown RBP eCLIP6.45□□□□□ -1.38
LIMA1-203ENST00000547825 PDILTQ8N807 584 aa6.45□□□□□ -1.38
LIMA1-203ENST00000547825 SLC10A4Q96EP9 437 aa6.45□□□□□ -1.38
LIMA1-203ENST00000547825 TNMDQ9H2S6 317 aa6.45□□□□□ -1.38
LIMA1-203ENST00000547825 LRRC37AA6NMS7 1700 aa6.45□□□□□ -1.38
LIMA1-203ENST00000547825 WDR33Q9C0J8 1336 aaKnown RBP6.45□□□□□ -1.38
LIMA1-203ENST00000547825 F6X3S4 739 aa6.45□□□□□ -1.38
LIMA1-203ENST00000547825 ZPR1O75312 459 aa6.45□□□□□ -1.38
LIMA1-203ENST00000547825 IFIT2P09913 472 aaKnown RBP6.45□□□□□ -1.38
LIMA1-203ENST00000547825 CWC27Q6UX04 472 aaKnown RBP6.45□□□□□ -1.38
LIMA1-203ENST00000547825 PTF1AQ7RTS3 328 aa6.45□□□□□ -1.38
LIMA1-203ENST00000547825 KRT27Q7Z3Y8 459 aa6.45□□□□□ -1.38
LIMA1-203ENST00000547825 DHX37Q8IY37 1157 aaKnown RBP6.45□□□□□ -1.38
LIMA1-203ENST00000547825 ANKRD24Q8TF21 1146 aa6.45□□□□□ -1.38
LIMA1-203ENST00000547825 GPATCH3Q96I76 525 aa6.45□□□□□ -1.38
LIMA1-203ENST00000547825 COG3Q96JB2 828 aa6.45□□□□□ -1.38
LIMA1-203ENST00000547825 PRDM11Q9NQV5 511 aa6.45□□□□□ -1.38
LIMA1-203ENST00000547825 FAM26DQ5JW98 314 aa6.44□□□□□ -1.38
LIMA1-203ENST00000547825 MEX3CQ5U5Q3 659 aaKnown RBP6.44□□□□□ -1.38
LIMA1-203ENST00000547825 LARP1BQ659C4 914 aaKnown RBP6.44□□□□□ -1.38
LIMA1-203ENST00000547825 ZNF358Q9NW07 568 aa6.44□□□□□ -1.38
LIMA1-203ENST00000547825 C9orf78Q9NZ63 289 aaPredicted RBP6.44□□□□□ -1.38
LIMA1-203ENST00000547825 FCF1Q9Y324 198 aaKnown RBP6.44□□□□□ -1.38
LIMA1-203ENST00000547825 LTBP1Q14766 1721 aa6.44□□□□□ -1.38
LIMA1-203ENST00000547825 TNNT1P13805 278 aa6.44□□□□□ -1.38
LIMA1-203ENST00000547825 CCDC73Q6ZRK6 1079 aa6.44□□□□□ -1.38
LIMA1-203ENST00000547825 CCDC83Q8IWF9 413 aa6.44□□□□□ -1.38
LIMA1-203ENST00000547825 TOMM22Q9NS69 142 aa6.44□□□□□ -1.38
LIMA1-203ENST00000547825 CCDC87Q9NVE4 849 aa6.44□□□□□ -1.38
LIMA1-203ENST00000547825 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.44□□□□□ -1.38
LIMA1-203ENST00000547825 DICER1Q9UPY3 1922 aaKnown RBP6.44□□□□□ -1.38
LIMA1-203ENST00000547825 SBF1O95248 1867 aa6.44□□□□□ -1.38
LIMA1-203ENST00000547825 CYP2E1P05181 493 aaPredicted RBP6.44□□□□□ -1.38
LIMA1-203ENST00000547825 USP4Q13107 963 aa6.44□□□□□ -1.38
LIMA1-203ENST00000547825 EIF4A2Q14240 407 aaKnown RBP6.44□□□□□ -1.38
LIMA1-203ENST00000547825 BPHLQ86WA6 291 aaPredicted RBP6.44□□□□□ -1.38
LIMA1-203ENST00000547825 TSPAN10Q9H1Z9 355 aaPredicted RBP6.44□□□□□ -1.38
LIMA1-203ENST00000547825 EMILIN1Q9Y6C2 1016 aa6.44□□□□□ -1.38
LIMA1-203ENST00000547825 HEG1Q9ULI3 1381 aa6.44□□□□□ -1.38
LIMA1-203ENST00000547825 CHD4Q14839 1912 aa6.44□□□□□ -1.38
LIMA1-203ENST00000547825 GTF2F1P35269 517 aaKnown RBP eCLIP6.44□□□□□ -1.38
LIMA1-203ENST00000547825 GPS2Q13227 327 aa6.44□□□□□ -1.38
LIMA1-203ENST00000547825 BMP2KLQ5H9B9 411 aa6.44□□□□□ -1.38
LIMA1-203ENST00000547825 SCG3Q8WXD2 468 aaKnown RBP6.44□□□□□ -1.38
LIMA1-203ENST00000547825 DDX11Q96FC9 970 aa6.44□□□□□ -1.38
LIMA1-203ENST00000547825 IL25Q9H293 177 aa6.44□□□□□ -1.38
LIMA1-203ENST00000547825 TMX1Q9H3N1 280 aa6.44□□□□□ -1.38
LIMA1-203ENST00000547825 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.44□□□□□ -1.38
LIMA1-203ENST00000547825 MCCD1P59942 119 aaPredicted RBP6.43□□□□□ -1.38
LIMA1-203ENST00000547825 SH3BP2P78314 561 aa6.43□□□□□ -1.38
LIMA1-203ENST00000547825 HSP90AB2PQ58FF8 381 aa6.43□□□□□ -1.38
LIMA1-203ENST00000547825 LRSAM1Q6UWE0 723 aa6.43□□□□□ -1.38
LIMA1-203ENST00000547825 GPT2Q8TD30 523 aa6.43□□□□□ -1.38
LIMA1-203ENST00000547825 MTRQ99707 1265 aa6.43□□□□□ -1.38
LIMA1-203ENST00000547825 WWC3Q9ULE0 1092 aa6.43□□□□□ -1.38
LIMA1-203ENST00000547825 S1PR4O95977 384 aa6.43□□□□□ -1.38
LIMA1-203ENST00000547825 UBTFL1P0CB47 393 aaPredicted RBP6.43□□□□□ -1.38
LIMA1-203ENST00000547825 ATP2B1P20020 1258 aa6.43□□□□□ -1.38
LIMA1-203ENST00000547825 U2AF2P26368 475 aaKnown RBP eCLIP6.43□□□□□ -1.38
LIMA1-203ENST00000547825 AIMP1Q12904 312 aaKnown RBP6.43□□□□□ -1.38
LIMA1-203ENST00000547825 RRS1Q15050 365 aaKnown RBP6.43□□□□□ -1.38
LIMA1-203ENST00000547825 C8orf58Q8NAV2 365 aa6.43□□□□□ -1.38
LIMA1-203ENST00000547825 TMX3Q96JJ7 454 aa6.43□□□□□ -1.38
LIMA1-203ENST00000547825 VAMP4O75379 141 aa6.43□□□□□ -1.38
LIMA1-203ENST00000547825 ADH1BP00325 375 aa6.43□□□□□ -1.38
LIMA1-203ENST00000547825 SCNN1DP51172 638 aa6.43□□□□□ -1.38
LIMA1-203ENST00000547825 EAPPQ56P03 285 aaPredicted RBP6.43□□□□□ -1.38
LIMA1-203ENST00000547825 NOC3LQ8WTT2 800 aaKnown RBP6.43□□□□□ -1.38
LIMA1-203ENST00000547825 RUFY2Q8WXA3 655 aa6.43□□□□□ -1.38
LIMA1-203ENST00000547825 SNX21Q969T3 373 aa6.43□□□□□ -1.38
LIMA1-203ENST00000547825 JAKMIP1Q96N16 626 aaKnown RBP6.43□□□□□ -1.38
LIMA1-203ENST00000547825 PPEF1O14829 653 aaPredicted RBP6.42□□□□□ -1.38
LIMA1-203ENST00000547825 MCM2P49736 904 aa6.42□□□□□ -1.38
LIMA1-203ENST00000547825 NAALADL2Q58DX5 795 aa6.42□□□□□ -1.38
LIMA1-203ENST00000547825 SULT6B1Q6IMI4 303 aa6.42□□□□□ -1.38
LIMA1-203ENST00000547825 NUP62CLQ9H1M0 184 aa6.42□□□□□ -1.38
LIMA1-203ENST00000547825 ARGLU1Q9NWB6 273 aaPredicted RBP6.42□□□□□ -1.38
LIMA1-203ENST00000547825 MAP3K5Q99683 1374 aa6.42□□□□□ -1.38
LIMA1-203ENST00000547825 CYP27B1O15528 508 aa6.42□□□□□ -1.38
LIMA1-203ENST00000547825 SDSP20132 328 aa6.42□□□□□ -1.38
LIMA1-203ENST00000547825 RGL4Q8IZJ4 473 aa6.42□□□□□ -1.38
LIMA1-203ENST00000547825 HELQQ8TDG4 1101 aa6.42□□□□□ -1.38
LIMA1-203ENST00000547825 TCEANC2Q96MN5 208 aa6.42□□□□□ -1.38
LIMA1-203ENST00000547825 TMPRSS4Q9NRS4 437 aa6.42□□□□□ -1.38
LIMA1-203ENST00000547825 SERTAD1Q9UHV2 236 aa6.42□□□□□ -1.38
LIMA1-203ENST00000547825 SPG7Q9UQ90 795 aa6.42□□□□□ -1.38
LIMA1-203ENST00000547825 A0A1W2PRU2 124 aa6.42□□□□□ -1.38
LIMA1-203ENST00000547825 ERVH48-1M5A8F1 160 aa6.42□□□□□ -1.38
LIMA1-203ENST00000547825 KINO60870 393 aaKnown RBP6.42□□□□□ -1.38
LIMA1-203ENST00000547825 TPM3P06753 285 aa6.42□□□□□ -1.38
LIMA1-203ENST00000547825 CASTP20810 708 aaKnown RBP6.42□□□□□ -1.38
LIMA1-203ENST00000547825 IBSPP21815 317 aaPredicted RBP6.42□□□□□ -1.38
LIMA1-203ENST00000547825 KRT85P78386 507 aa6.42□□□□□ -1.38
LIMA1-203ENST00000547825 COL9A3Q14050 684 aaPredicted RBP6.42□□□□□ -1.38
LIMA1-203ENST00000547825 NBPF20Q3BBV1 942 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms