RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 OLFM4Q6UX06 510 aa8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 KSR1Q8IVT5 923 aa8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 TEX11Q8IYF3 940 aa8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 ZNF513Q8N8E2 541 aaPredicted RBP8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 SMCR8Q8TEV9 937 aaPredicted RBP8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 ZNF483Q8TF39 744 aaPredicted RBP8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 CHP1Q99653 195 aa8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 SLC40A1Q9NP59 571 aa8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 SEC31BQ9NQW1 1179 aa8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 LRRC7Q96NW7 1537 aa8.22□□□□□ -1.09
LIMCH1-207ENST00000508466 CDC42BPAQ5VT25 1732 aa8.22□□□□□ -1.09
LIMCH1-207ENST00000508466 GCFC2P16383 781 aaKnown RBP8.22□□□□□ -1.09
LIMCH1-207ENST00000508466 AFMP43652 599 aa8.22□□□□□ -1.09
LIMCH1-207ENST00000508466 CDR1P51861 262 aa8.22□□□□□ -1.09
LIMCH1-207ENST00000508466 MYO1EQ12965 1108 aa8.22□□□□□ -1.09
LIMCH1-207ENST00000508466 PTPROQ16827 1216 aa8.22□□□□□ -1.09
LIMCH1-207ENST00000508466 SPECC1LQ69YQ0 1117 aa8.22□□□□□ -1.09
LIMCH1-207ENST00000508466 CCDC13Q8IYE1 715 aa8.22□□□□□ -1.09
LIMCH1-207ENST00000508466 LINC00301Q8NCQ3 95 aa8.22□□□□□ -1.09
LIMCH1-207ENST00000508466 CCDC148Q8NFR7 591 aa8.22□□□□□ -1.09
LIMCH1-207ENST00000508466 AIDAQ96BJ3 306 aa8.22□□□□□ -1.09
LIMCH1-207ENST00000508466 IL17RAQ96F46 866 aa8.22□□□□□ -1.09
LIMCH1-207ENST00000508466 KCND1Q9NSA2 647 aa8.22□□□□□ -1.09
LIMCH1-207ENST00000508466 SHANK2Q9UPX8 1470 aa8.22□□□□□ -1.09
LIMCH1-207ENST00000508466 A0A1B0GVG6 124 aa8.22□□□□□ -1.09
LIMCH1-207ENST00000508466 PDE2AO00408 941 aaPredicted RBP8.22□□□□□ -1.09
LIMCH1-207ENST00000508466 CHUKO15111 745 aa8.22□□□□□ -1.09
LIMCH1-207ENST00000508466 PYGLP06737 847 aa8.22□□□□□ -1.09
LIMCH1-207ENST00000508466 FXR1P51114 621 aaKnown RBP eCLIP8.22□□□□□ -1.09
LIMCH1-207ENST00000508466 GUCY2FP51841 1108 aa8.22□□□□□ -1.09
LIMCH1-207ENST00000508466 IDI1Q13907 227 aa8.22□□□□□ -1.09
LIMCH1-207ENST00000508466 SLC9C2Q5TAH2 1124 aa8.22□□□□□ -1.09
LIMCH1-207ENST00000508466 CEP112Q8N8E3 955 aa8.22□□□□□ -1.09
LIMCH1-207ENST00000508466 TSEN2Q8NCE0 465 aaKnown RBP8.22□□□□□ -1.09
LIMCH1-207ENST00000508466 IFT81Q8WYA0 676 aa8.22□□□□□ -1.09
LIMCH1-207ENST00000508466 ZNF396Q96N95 335 aaPredicted RBP8.22□□□□□ -1.09
LIMCH1-207ENST00000508466 VPS16Q9H269 839 aa8.22□□□□□ -1.09
LIMCH1-207ENST00000508466 RAB21Q9UL25 225 aa8.22□□□□□ -1.09
LIMCH1-207ENST00000508466 MYO6Q9UM54 1294 aa8.22□□□□□ -1.09
LIMCH1-207ENST00000508466 RIPOR2Q9Y4F9 1068 aa8.22□□□□□ -1.09
LIMCH1-207ENST00000508466 NEDD4P46934 1319 aa8.22□□□□□ -1.09
LIMCH1-207ENST00000508466 MACROD2A1Z1Q3 448 aa8.21□□□□□ -1.09
LIMCH1-207ENST00000508466 ZSCAN5CA6NGD5 496 aaPredicted RBP8.21□□□□□ -1.09
LIMCH1-207ENST00000508466 E7EVH7 732 aa8.21□□□□□ -1.09
LIMCH1-207ENST00000508466 EPB41L2O43491 1005 aaKnown RBP8.21□□□□□ -1.09
LIMCH1-207ENST00000508466 TRADDQ15628 312 aa8.21□□□□□ -1.09
LIMCH1-207ENST00000508466 GNPTABQ3T906 1256 aa8.21□□□□□ -1.09
LIMCH1-207ENST00000508466 ADALQ6DHV7 355 aa8.21□□□□□ -1.09
LIMCH1-207ENST00000508466 PNMA8AQ86V59 439 aaPredicted RBP8.21□□□□□ -1.09
LIMCH1-207ENST00000508466 PPFIBP1Q86W92 1011 aa8.21□□□□□ -1.09
LIMCH1-207ENST00000508466 STAMBPL1Q96FJ0 436 aa8.21□□□□□ -1.09
LIMCH1-207ENST00000508466 JADE2Q9NQC1 790 aa8.21□□□□□ -1.09
LIMCH1-207ENST00000508466 DMGDHQ9UI17 866 aaKnown RBP8.21□□□□□ -1.09
LIMCH1-207ENST00000508466 GRIN2DO15399 1336 aa8.21□□□□□ -1.09
LIMCH1-207ENST00000508466 EIF3HO15372 352 aaKnown RBP eCLIP8.21□□□□□ -1.1
LIMCH1-207ENST00000508466 FDPSP14324 419 aaKnown RBP8.21□□□□□ -1.1
LIMCH1-207ENST00000508466 EIF4A2Q14240 407 aaKnown RBP8.21□□□□□ -1.1
LIMCH1-207ENST00000508466 USP49Q70CQ1 688 aa8.21□□□□□ -1.1
LIMCH1-207ENST00000508466 SSH3Q8TE77 659 aa8.21□□□□□ -1.1
LIMCH1-207ENST00000508466 TCP11Q8WWU5 503 aa8.21□□□□□ -1.1
LIMCH1-207ENST00000508466 RNPC3Q96LT9 517 aaKnown RBP8.21□□□□□ -1.1
LIMCH1-207ENST00000508466 MED15Q96RN5 788 aa8.21□□□□□ -1.1
LIMCH1-207ENST00000508466 DENND2AQ9ULE3 1009 aa8.21□□□□□ -1.1
LIMCH1-207ENST00000508466 ARHGAP5Q13017 1502 aa8.21□□□□□ -1.1
LIMCH1-207ENST00000508466 IQGAP1P46940 1657 aa8.21□□□□□ -1.1
LIMCH1-207ENST00000508466 PPRC1Q5VV67 1664 aaKnown RBP8.21□□□□□ -1.1
LIMCH1-207ENST00000508466 KCNQ3O43525 872 aa8.21□□□□□ -1.1
LIMCH1-207ENST00000508466 PIP4K2AP48426 406 aaPredicted RBP8.21□□□□□ -1.1
LIMCH1-207ENST00000508466 CYP27A1Q02318 531 aa8.21□□□□□ -1.1
LIMCH1-207ENST00000508466 TTMPQ5BVD1 217 aa8.21□□□□□ -1.1
LIMCH1-207ENST00000508466 AP1ARQ63HQ0 302 aa8.21□□□□□ -1.1
LIMCH1-207ENST00000508466 MSANTD4Q8NCY6 345 aa8.21□□□□□ -1.1
LIMCH1-207ENST00000508466 NOC3LQ8WTT2 800 aaKnown RBP8.21□□□□□ -1.1
LIMCH1-207ENST00000508466 COG1Q8WTW3 980 aa8.21□□□□□ -1.1
LIMCH1-207ENST00000508466 HNRNPLLQ8WVV9 542 aaKnown RBP8.21□□□□□ -1.1
LIMCH1-207ENST00000508466 NAPGQ99747 312 aaPredicted RBP8.21□□□□□ -1.1
LIMCH1-207ENST00000508466 TM6SF1Q9BZW5 370 aa8.21□□□□□ -1.1
LIMCH1-207ENST00000508466 TMEM165Q9HC07 324 aa8.21□□□□□ -1.1
LIMCH1-207ENST00000508466 C9orf78Q9NZ63 289 aaPredicted RBP8.21□□□□□ -1.1
LIMCH1-207ENST00000508466 RTEL1Q9NZ71 1219 aa8.21□□□□□ -1.1
LIMCH1-207ENST00000508466 TPX2Q9ULW0 747 aaKnown RBP8.21□□□□□ -1.1
LIMCH1-207ENST00000508466 CLTCL1P53675 1640 aa8.2□□□□□ -1.1
LIMCH1-207ENST00000508466 CARMIL2Q6F5E8 1435 aa8.2□□□□□ -1.1
LIMCH1-207ENST00000508466 KIAA0556O60303 1618 aa8.2□□□□□ -1.1
LIMCH1-207ENST00000508466 GOLGA6L7A0A1B0GV03 622 aa8.2□□□□□ -1.1
LIMCH1-207ENST00000508466 AKR1B15C9JRZ8 316 aaPredicted RBP8.2□□□□□ -1.1
LIMCH1-207ENST00000508466 DNM1LO00429 736 aa8.2□□□□□ -1.1
LIMCH1-207ENST00000508466 MEFVO15553 781 aaPredicted RBP8.2□□□□□ -1.1
LIMCH1-207ENST00000508466 STX10O60499 249 aa8.2□□□□□ -1.1
LIMCH1-207ENST00000508466 TAF5LO75529 589 aa8.2□□□□□ -1.1
LIMCH1-207ENST00000508466 CLTAP09496 248 aa8.2□□□□□ -1.1
LIMCH1-207ENST00000508466 TMOD1P28289 359 aa8.2□□□□□ -1.1
LIMCH1-207ENST00000508466 NBPF9Q3BBW0 867 aa8.2□□□□□ -1.1
LIMCH1-207ENST00000508466 HDGFL1Q5TGJ6 251 aa8.2□□□□□ -1.1
LIMCH1-207ENST00000508466 ANKRD13CQ8N6S4 541 aa8.2□□□□□ -1.1
LIMCH1-207ENST00000508466 KCNV2Q8TDN2 545 aa8.2□□□□□ -1.1
LIMCH1-207ENST00000508466 PHKBQ93100 1093 aa8.2□□□□□ -1.1
LIMCH1-207ENST00000508466 THRAP3Q9Y2W1 955 aaKnown RBP8.2□□□□□ -1.1
LIMCH1-207ENST00000508466 IFT140Q96RY7 1462 aa8.2□□□□□ -1.1
LIMCH1-207ENST00000508466 SSH2Q76I76 1423 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms