RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 ARMC9Q7Z3E5 817 aa9.94□□□□□ -0.82
SCN1A-207ENST00000507401 KCNV2Q8TDN2 545 aa9.94□□□□□ -0.82
SCN1A-207ENST00000507401 CSRNP1Q96S65 589 aa9.94□□□□□ -0.82
SCN1A-207ENST00000507401 SCAF8Q9UPN6 1271 aaKnown RBP9.94□□□□□ -0.82
SCN1A-207ENST00000507401 LRRFIP2Q9Y608 721 aaKnown RBP9.94□□□□□ -0.82
SCN1A-207ENST00000507401 PPP1R12BO60237 982 aaPredicted RBP9.93□□□□□ -0.82
SCN1A-207ENST00000507401 BCAR3O75815 825 aa9.93□□□□□ -0.82
SCN1A-207ENST00000507401 TRIM27P14373 513 aa9.93□□□□□ -0.82
SCN1A-207ENST00000507401 OSBPP22059 807 aa9.93□□□□□ -0.82
SCN1A-207ENST00000507401 TNFAIP1Q13829 316 aa9.93□□□□□ -0.82
SCN1A-207ENST00000507401 TTLL12Q14166 644 aaPredicted RBP9.93□□□□□ -0.82
SCN1A-207ENST00000507401 RASAL3Q86YV0 1011 aa9.93□□□□□ -0.82
SCN1A-207ENST00000507401 DZIP1LQ8IYY4 767 aaKnown RBP9.93□□□□□ -0.82
SCN1A-207ENST00000507401 WDR66Q8TBY9 1149 aa9.93□□□□□ -0.82
SCN1A-207ENST00000507401 IPO9Q96P70 1041 aaKnown RBP9.93□□□□□ -0.82
SCN1A-207ENST00000507401 MEIS3Q99687 375 aa9.93□□□□□ -0.82
SCN1A-207ENST00000507401 RABGEF1Q9UJ41 708 aa9.93□□□□□ -0.82
SCN1A-207ENST00000507401 JAG2Q9Y219 1238 aa9.93□□□□□ -0.82
SCN1A-207ENST00000507401 ECM29Q5VYK3 1845 aa9.93□□□□□ -0.82
SCN1A-207ENST00000507401 SEMA3EO15041 775 aa9.92□□□□□ -0.82
SCN1A-207ENST00000507401 GNAI2P04899 355 aa9.92□□□□□ -0.82
SCN1A-207ENST00000507401 CRKP46108 304 aa9.92□□□□□ -0.82
SCN1A-207ENST00000507401 TM4SF4P48230 202 aa9.92□□□□□ -0.82
SCN1A-207ENST00000507401 INHBEP58166 350 aa9.92□□□□□ -0.82
SCN1A-207ENST00000507401 FKBP1CQ5VVH2 108 aa9.92□□□□□ -0.82
SCN1A-207ENST00000507401 ZKSCAN2Q63HK3 967 aa9.92□□□□□ -0.82
SCN1A-207ENST00000507401 HHIPL2Q6UWX4 724 aa9.92□□□□□ -0.82
SCN1A-207ENST00000507401 MOB2Q70IA6 237 aa9.92□□□□□ -0.82
SCN1A-207ENST00000507401 FRAT1Q92837 279 aaPredicted RBP9.92□□□□□ -0.82
SCN1A-207ENST00000507401 TEKT1Q969V4 418 aa9.92□□□□□ -0.82
SCN1A-207ENST00000507401 KCTD12Q96CX2 325 aaKnown RBP9.92□□□□□ -0.82
SCN1A-207ENST00000507401 GNL3LQ9NVN8 582 aaKnown RBP9.92□□□□□ -0.82
SCN1A-207ENST00000507401 RNF186Q9NXI6 227 aa9.92□□□□□ -0.82
SCN1A-207ENST00000507401 HCSTQ9UBK5 93 aa9.92□□□□□ -0.82
SCN1A-207ENST00000507401 ZNF70Q9UC06 446 aaPredicted RBP9.92□□□□□ -0.82
SCN1A-207ENST00000507401 PCDHAC2Q9Y5I4 1007 aa9.92□□□□□ -0.82
SCN1A-207ENST00000507401 MAST3O60307 1309 aa9.91□□□□□ -0.82
SCN1A-207ENST00000507401 ZBED9Q6R2W3 1325 aa9.91□□□□□ -0.82
SCN1A-207ENST00000507401 CLRN2A0PK11 232 aa9.91□□□□□ -0.82
SCN1A-207ENST00000507401 SRGAP3O43295 1099 aa9.91□□□□□ -0.82
SCN1A-207ENST00000507401 TNNI2P48788 182 aa9.91□□□□□ -0.82
SCN1A-207ENST00000507401 CHAF1AQ13111 956 aaPredicted RBP9.91□□□□□ -0.82
SCN1A-207ENST00000507401 RASA3Q14644 834 aa9.91□□□□□ -0.82
SCN1A-207ENST00000507401 ATP2B3Q16720 1220 aa9.91□□□□□ -0.82
SCN1A-207ENST00000507401 SLC10A4Q96EP9 437 aa9.91□□□□□ -0.82
SCN1A-207ENST00000507401 ZDHHC15Q96MV8 337 aa9.91□□□□□ -0.82
SCN1A-207ENST00000507401 SIL1Q9H173 461 aa9.91□□□□□ -0.82
SCN1A-207ENST00000507401 TDRD3Q9H7E2 651 aaKnown RBP9.91□□□□□ -0.82
SCN1A-207ENST00000507401 VEZTQ9HBM0 779 aa9.91□□□□□ -0.82
SCN1A-207ENST00000507401 ANGEL1Q9UNK9 670 aaKnown RBP9.91□□□□□ -0.82
SCN1A-207ENST00000507401 IQSEC3Q9UPP2 1182 aaPredicted RBP9.91□□□□□ -0.82
SCN1A-207ENST00000507401 AKAP2Q9Y2D5 859 aa9.91□□□□□ -0.82
SCN1A-207ENST00000507401 AKAP11Q9UKA4 1901 aa9.91□□□□□ -0.82
SCN1A-207ENST00000507401 USP2O75604 605 aaPredicted RBP9.9□□□□□ -0.82
SCN1A-207ENST00000507401 TRPA1O75762 1119 aa9.9□□□□□ -0.82
SCN1A-207ENST00000507401 IREB2P48200 963 aaKnown RBP9.9□□□□□ -0.82
SCN1A-207ENST00000507401 GRIK5Q16478 980 aa9.9□□□□□ -0.82
SCN1A-207ENST00000507401 NBPF12Q5TAG4 269 aaPredicted RBP9.9□□□□□ -0.82
SCN1A-207ENST00000507401 FAM83AQ86UY5 434 aa9.9□□□□□ -0.82
SCN1A-207ENST00000507401 DENND2AQ9ULE3 1009 aa9.9□□□□□ -0.82
SCN1A-207ENST00000507401 AOX1Q06278 1338 aa9.89□□□□□ -0.83
SCN1A-207ENST00000507401 SALL1Q9NSC2 1324 aa9.89□□□□□ -0.83
SCN1A-207ENST00000507401 GRXCR2A6NFK2 248 aa9.89□□□□□ -0.83
SCN1A-207ENST00000507401 MAP3K7O43318 606 aa9.89□□□□□ -0.83
SCN1A-207ENST00000507401 ZBTB48P10074 688 aaPredicted RBP9.89□□□□□ -0.83
SCN1A-207ENST00000507401 SREBF2Q12772 1141 aa9.89□□□□□ -0.83
SCN1A-207ENST00000507401 PRKG1Q13976 671 aa9.89□□□□□ -0.83
SCN1A-207ENST00000507401 NOM1Q5C9Z4 860 aaKnown RBP9.89□□□□□ -0.83
SCN1A-207ENST00000507401 SPRYD7Q5W111 196 aa9.89□□□□□ -0.83
SCN1A-207ENST00000507401 APOBEC3HQ6NTF7 200 aaKnown RBP9.89□□□□□ -0.83
SCN1A-207ENST00000507401 ANKRD13AQ8IZ07 590 aa9.89□□□□□ -0.83
SCN1A-207ENST00000507401 CLUAP1Q96AJ1 413 aa9.89□□□□□ -0.83
SCN1A-207ENST00000507401 HOOK2Q96ED9 719 aa9.89□□□□□ -0.83
SCN1A-207ENST00000507401 TEPSINQ96N21 525 aa9.89□□□□□ -0.83
SCN1A-207ENST00000507401 CFHR5Q9BXR6 569 aa9.89□□□□□ -0.83
SCN1A-207ENST00000507401 TSKSQ9UJT2 592 aa9.89□□□□□ -0.83
SCN1A-207ENST00000507401 PA2G4Q9UQ80 394 aaKnown RBP9.89□□□□□ -0.83
SCN1A-207ENST00000507401 ARAP2Q8WZ64 1704 aa9.89□□□□□ -0.83
SCN1A-207ENST00000507401 PDS5AQ29RF7 1337 aaKnown RBP9.88□□□□□ -0.83
SCN1A-207ENST00000507401 MANSC4A6NHS7 340 aaPredicted RBP9.88□□□□□ -0.83
SCN1A-207ENST00000507401 TRIM6-TRIM34B2RNG4 842 aa9.88□□□□□ -0.83
SCN1A-207ENST00000507401 ALDH1A1P00352 501 aa9.88□□□□□ -0.83
SCN1A-207ENST00000507401 TIMM10P62072 90 aa9.88□□□□□ -0.83
SCN1A-207ENST00000507401 ATP8B2P98198 1209 aa9.88□□□□□ -0.83
SCN1A-207ENST00000507401 G3BP1Q13283 466 aaKnown RBP eCLIP9.88□□□□□ -0.83
SCN1A-207ENST00000507401 GLIPR1L2Q4G1C9 344 aa9.88□□□□□ -0.83
SCN1A-207ENST00000507401 CCDC102BQ68D86 513 aa9.88□□□□□ -0.83
SCN1A-207ENST00000507401 ZGPATQ8N5A5 531 aaKnown RBP9.88□□□□□ -0.83
SCN1A-207ENST00000507401 TMEM57Q8N5G2 664 aa9.88□□□□□ -0.83
SCN1A-207ENST00000507401 ABHD8Q96I13 439 aa9.88□□□□□ -0.83
SCN1A-207ENST00000507401 NBPF3Q9H094 633 aa9.88□□□□□ -0.83
SCN1A-207ENST00000507401 TMOD2Q9NZR1 351 aa9.88□□□□□ -0.83
SCN1A-207ENST00000507401 KIAA1468Q9P260 1216 aa9.88□□□□□ -0.83
SCN1A-207ENST00000507401 CASP8AP2Q9UKL3 1982 aa9.88□□□□□ -0.83
SCN1A-207ENST00000507401 A0A1B0GUL7 405 aa9.87□□□□□ -0.83
SCN1A-207ENST00000507401 TCP10L2B9ZVM9 353 aa9.87□□□□□ -0.83
SCN1A-207ENST00000507401 ZBTB7BO15156 539 aaPredicted RBP9.87□□□□□ -0.83
SCN1A-207ENST00000507401 LDHBP07195 334 aaKnown RBP9.87□□□□□ -0.83
SCN1A-207ENST00000507401 MS4A1P11836 297 aa9.87□□□□□ -0.83
SCN1A-207ENST00000507401 TFCP2Q12800 502 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms