RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 LEFTY1O75610 366 aa7.18□□□□□ -1.26
VPS29-202ENST00000447578 PLCL1Q15111 1095 aa7.18□□□□□ -1.26
VPS29-202ENST00000447578 KIF4BQ2VIQ3 1234 aa7.18□□□□□ -1.26
VPS29-202ENST00000447578 SMYD4Q8IYR2 804 aaPredicted RBP7.18□□□□□ -1.26
VPS29-202ENST00000447578 KCNB2Q92953 911 aa7.18□□□□□ -1.26
VPS29-202ENST00000447578 ATXN3LQ9H3M9 355 aa7.18□□□□□ -1.26
VPS29-202ENST00000447578 PAPLNO95428 1278 aa7.17□□□□□ -1.26
VPS29-202ENST00000447578 JUNBP17275 347 aaPredicted RBP7.17□□□□□ -1.26
VPS29-202ENST00000447578 CD96P40200 585 aa7.17□□□□□ -1.26
VPS29-202ENST00000447578 ZNF792Q3KQV3 632 aa7.17□□□□□ -1.26
VPS29-202ENST00000447578 PDZD3Q86UT5 571 aa7.17□□□□□ -1.26
VPS29-202ENST00000447578 TMEM39AQ9NV64 488 aa7.17□□□□□ -1.26
VPS29-202ENST00000447578 CD8BP10966 210 aa7.16□□□□□ -1.26
VPS29-202ENST00000447578 NPM2Q86SE8 214 aaKnown RBP7.16□□□□□ -1.26
VPS29-202ENST00000447578 RETREG2Q8NC44 543 aa7.16□□□□□ -1.26
VPS29-202ENST00000447578 ALKBH8Q96BT7 664 aaKnown RBP7.16□□□□□ -1.26
VPS29-202ENST00000447578 DMRTB1Q96MA1 342 aa7.16□□□□□ -1.26
VPS29-202ENST00000447578 RBCK1Q9BYM8 510 aa7.16□□□□□ -1.26
VPS29-202ENST00000447578 BCO2Q9BYV7 579 aa7.16□□□□□ -1.26
VPS29-202ENST00000447578 KRT82Q9NSB4 513 aa7.16□□□□□ -1.26
VPS29-202ENST00000447578 NEFMP07197 916 aa7.15□□□□□ -1.26
VPS29-202ENST00000447578 TMC7Q7Z402 723 aa7.15□□□□□ -1.26
VPS29-202ENST00000447578 STK11IPQ8N1F8 1099 aa7.15□□□□□ -1.26
VPS29-202ENST00000447578 NETO1Q8TDF5 533 aa7.15□□□□□ -1.26
VPS29-202ENST00000447578 NLRP2Q9NX02 1062 aa7.15□□□□□ -1.26
VPS29-202ENST00000447578 AKAP2Q9Y2D5 859 aa7.15□□□□□ -1.26
VPS29-202ENST00000447578 PPP2R3AQ06190 1150 aa7.14□□□□□ -1.27
VPS29-202ENST00000447578 NXPE4Q6UWF7 544 aa7.14□□□□□ -1.27
VPS29-202ENST00000447578 MPRIPQ6WCQ1 1025 aa7.14□□□□□ -1.27
VPS29-202ENST00000447578 SULF2Q8IWU5 870 aa7.14□□□□□ -1.27
VPS29-202ENST00000447578 DUSP23Q9BVJ7 150 aa7.14□□□□□ -1.27
VPS29-202ENST00000447578 PCOLCE2Q9UKZ9 415 aa7.14□□□□□ -1.27
VPS29-202ENST00000447578 CARMIL2Q6F5E8 1435 aa7.13□□□□□ -1.27
VPS29-202ENST00000447578 MAP1SQ66K74 1059 aaPredicted RBP7.13□□□□□ -1.27
VPS29-202ENST00000447578 ISL2Q96A47 359 aa7.13□□□□□ -1.27
VPS29-202ENST00000447578 SSU72Q9NP77 194 aaKnown RBP7.13□□□□□ -1.27
VPS29-202ENST00000447578 PPP4R2Q9NY27 417 aa7.13□□□□□ -1.27
VPS29-202ENST00000447578 ADAMTS6Q9UKP5 1117 aa7.13□□□□□ -1.27
VPS29-202ENST00000447578 CCDC9Q9Y3X0 531 aaKnown RBP7.13□□□□□ -1.27
VPS29-202ENST00000447578 NCANO14594 1321 aa7.12□□□□□ -1.27
VPS29-202ENST00000447578 SOWAHDA6NJG2 315 aa7.12□□□□□ -1.27
VPS29-202ENST00000447578 RNASE1P07998 156 aaKnown RBP7.12□□□□□ -1.27
VPS29-202ENST00000447578 FUT4P22083 530 aa7.12□□□□□ -1.27
VPS29-202ENST00000447578 ARNTP27540 789 aa7.12□□□□□ -1.27
VPS29-202ENST00000447578 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.12□□□□□ -1.27
VPS29-202ENST00000447578 ZC3H12AQ5D1E8 599 aaKnown RBP7.12□□□□□ -1.27
VPS29-202ENST00000447578 TOP6BLQ8N6T0 577 aa7.12□□□□□ -1.27
VPS29-202ENST00000447578 GPBAR1Q8TDU6 330 aa7.12□□□□□ -1.27
VPS29-202ENST00000447578 MISP3Q96FF7 219 aa7.12□□□□□ -1.27
VPS29-202ENST00000447578 TRAIPQ9BWF2 469 aa7.12□□□□□ -1.27
VPS29-202ENST00000447578 MBNL3Q9NUK0 354 aaKnown RBP7.12□□□□□ -1.27
VPS29-202ENST00000447578 BIN2Q9UBW5 565 aaPredicted RBP7.12□□□□□ -1.27
VPS29-202ENST00000447578 PLAGL2Q9UPG8 496 aa7.12□□□□□ -1.27
VPS29-202ENST00000447578 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.12□□□□□ -1.27
VPS29-202ENST00000447578 OXCT1P55809 520 aa7.11□□□□□ -1.27
VPS29-202ENST00000447578 ZNF124Q15973 351 aa7.11□□□□□ -1.27
VPS29-202ENST00000447578 AOC3Q16853 763 aa7.11□□□□□ -1.27
VPS29-202ENST00000447578 ZNF648Q5T619 568 aaPredicted RBP7.11□□□□□ -1.27
VPS29-202ENST00000447578 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.11□□□□□ -1.27
VPS29-202ENST00000447578 RC3H2Q9HBD1 1191 aaKnown RBP7.11□□□□□ -1.27
VPS29-202ENST00000447578 VAV3Q9UKW4 847 aa7.11□□□□□ -1.27
VPS29-202ENST00000447578 CSADQ9Y600 493 aa7.11□□□□□ -1.27
VPS29-202ENST00000447578 PNMA6FA0A0J9YX94 578 aa7.1□□□□□ -1.27
VPS29-202ENST00000447578 PRRG2O14669 202 aa7.1□□□□□ -1.27
VPS29-202ENST00000447578 ZNF865P0CJ78 1059 aaPredicted RBP7.1□□□□□ -1.27
VPS29-202ENST00000447578 XRCC5P13010 732 aaKnown RBP7.1□□□□□ -1.27
VPS29-202ENST00000447578 ITIH2P19823 946 aa7.1□□□□□ -1.27
VPS29-202ENST00000447578 NME2P22392 152 aa7.1□□□□□ -1.27
VPS29-202ENST00000447578 PRKCQQ04759 706 aa7.1□□□□□ -1.27
VPS29-202ENST00000447578 DSC3Q14574 896 aa7.1□□□□□ -1.27
VPS29-202ENST00000447578 IFI16Q16666 785 aaKnown RBP7.1□□□□□ -1.27
VPS29-202ENST00000447578 KRTAP19-4Q3LI73 84 aa7.1□□□□□ -1.27
VPS29-202ENST00000447578 ARHGAP27Q6ZUM4 889 aa7.1□□□□□ -1.27
VPS29-202ENST00000447578 GRIN3AQ8TCU5 1115 aa7.1□□□□□ -1.27
VPS29-202ENST00000447578 CBX8Q9HC52 389 aa7.1□□□□□ -1.27
VPS29-202ENST00000447578 CEACAM5P06731 702 aa7.09□□□□□ -1.27
VPS29-202ENST00000447578 PLCB3Q01970 1234 aa7.09□□□□□ -1.27
VPS29-202ENST00000447578 ZNF252P-AS1Q0IIN9 211 aa7.09□□□□□ -1.27
VPS29-202ENST00000447578 PPM1JQ5JR12 505 aa7.09□□□□□ -1.27
VPS29-202ENST00000447578 UBE3DQ7Z6J8 389 aa7.09□□□□□ -1.27
VPS29-202ENST00000447578 AEBP1Q8IUX7 1158 aa7.09□□□□□ -1.27
VPS29-202ENST00000447578 RNF214Q8ND24 703 aa7.09□□□□□ -1.27
VPS29-202ENST00000447578 PI4K2BQ8TCG2 481 aa7.09□□□□□ -1.27
VPS29-202ENST00000447578 HEXIM2Q96MH2 286 aaKnown RBP7.09□□□□□ -1.27
VPS29-202ENST00000447578 DCTN4Q9UJW0 460 aa7.09□□□□□ -1.27
VPS29-202ENST00000447578 BIN1O00499 593 aa7.08□□□□□ -1.28
VPS29-202ENST00000447578 ERVK-24P63145 666 aa7.08□□□□□ -1.28
VPS29-202ENST00000447578 HNRNPUQ00839 825 aaKnown RBP eCLIP7.08□□□□□ -1.28
VPS29-202ENST00000447578 TPTE2Q6XPS3 522 aa7.08□□□□□ -1.28
VPS29-202ENST00000447578 LRRN4CLQ8ND94 238 aa7.08□□□□□ -1.28
VPS29-202ENST00000447578 C3orf58Q8NDZ4 430 aa7.08□□□□□ -1.28
VPS29-202ENST00000447578 ACSBG1Q96GR2 724 aa7.08□□□□□ -1.28
VPS29-202ENST00000447578 HRASLS5Q96KN8 279 aa7.08□□□□□ -1.28
VPS29-202ENST00000447578 KRTAP9-3Q9BYQ3 159 aa7.08□□□□□ -1.28
VPS29-202ENST00000447578 PRDM7Q9NQW5 492 aa7.08□□□□□ -1.28
VPS29-202ENST00000447578 DCDC2CA8MYV0 355 aa7.07□□□□□ -1.28
VPS29-202ENST00000447578 FBXO24O75426 580 aa7.07□□□□□ -1.28
VPS29-202ENST00000447578 PAGE1O75459 146 aa7.07□□□□□ -1.28
VPS29-202ENST00000447578 BMP6P22004 513 aa7.07□□□□□ -1.28
VPS29-202ENST00000447578 NTF4P34130 210 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms