RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 RBMS1P29558 406 aaKnown RBP3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 SIM2Q14190 667 aaPredicted RBP3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 GRIK4Q16099 956 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 TDRD5Q8NAT2 981 aaKnown RBP3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 SNX19Q92543 992 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 CUL5Q93034 780 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 NEUROD4Q9HD90 331 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 LMCD1Q9NZU5 365 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 SVILO95425 2214 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 MYOM3Q5VTT5 1437 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 JMJD1CQ15652 2540 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 MAST3O60307 1309 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 DIAPH2O60879 1101 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 SGPL1O95470 568 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 DHPSP49366 369 aaPredicted RBP3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 NFE2L2Q16236 605 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 GNASQ5JWF2 1037 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 BARGINQ6ZT62 677 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 FAM160A2Q8N612 972 aaPredicted RBP3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 RIN2Q8WYP3 895 aaPredicted RBP3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 CCDC85AQ96PX6 553 aaPredicted RBP3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 TCHPQ9BT92 498 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 ANP32EQ9BTT0 268 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 GPRC5CQ9NQ84 441 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 DACH1Q9UI36 760 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 SCAF11Q99590 1463 aaKnown RBP3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 IFNA2P01563 188 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 GNSP15586 552 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 LTKP29376 864 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 GNL1P36915 607 aaPredicted RBP3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 TMPOP42166 694 aaKnown RBP3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 SEMG2Q02383 582 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 MYSM1Q5VVJ2 828 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 DHX30Q7L2E3 1194 aaKnown RBP eCLIP3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 PLEKHM2Q8IWE5 1019 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 TMEM87BQ96K49 555 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 GPR20Q99678 358 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 BRIP1Q9BX63 1249 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 ABCF2Q9UG63 623 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 SFMBT1Q9UHJ3 866 aa3.29□□□□□ -1.88
CCDC88A-205ENST00000426576 RTEL1-TNFRSF6BF6WH68 1400 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 KIAA0232Q92628 1395 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 SPTBN4Q9H254 2564 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 TRIM75PA6NK02 468 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 ZBTB7BO15156 539 aaPredicted RBP3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 NDUFS2O75306 463 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 MYL3P08590 195 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 PHKA2P46019 1235 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 FLT3LGP49771 235 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 INHBCP55103 352 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 CCDC149Q6ZUS6 474 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 RD3Q7Z3Z2 195 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 CKAP2LQ8IYA6 745 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 TEX19Q8NA77 164 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 HNRNPLLQ8WVV9 542 aaKnown RBP3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 BBXQ8WY36 941 aaPredicted RBP3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 TLN1Q9Y490 2541 aaKnown RBP3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 A0A087X0B3 334 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 AP1G2O75843 785 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 STAG3L1P0CL83 205 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 RTP1P59025 263 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 BTG3Q14201 252 aaPredicted RBP3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 MORC1Q86VD1 984 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 ANKRD35Q8N283 1001 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 DCAF11Q8TEB1 546 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 SOCS4Q8WXH5 440 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 CDCA5Q96FF9 252 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 SPACA7Q96KW9 195 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 NEK1Q96PY6 1258 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 RTKNQ9BST9 563 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 NKX2-4Q9H2Z4 354 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 KNSTRNQ9Y448 316 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 FARP1Q9Y4F1 1045 aaPredicted RBP3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 MAPKBP1O60336 1514 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 ALDH1A2O94788 518 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 SLC3A2P08195 630 aaKnown RBP3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 SRRM1Q8IYB3 904 aaKnown RBP3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 CENPSQ8N2Z9 138 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 UBR7Q8N806 425 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 HPS3Q969F9 1004 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 GAD1Q99259 594 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 TCF25Q9BQ70 676 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 BRD8Q9H0E9 1235 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 V9GY48 417 aaPredicted RBP3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 PNPLA6Q8IY17 1366 aa3.28□□□□□ -1.88
CCDC88A-205ENST00000426576 SPATA31A1Q5TZJ5 1347 aa3.28□□□□□ -1.89
CCDC88A-205ENST00000426576 KDM5DQ9BY66 1539 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 SPTLC1O15269 473 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 MAP3K7O43318 606 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 PRMT3O60678 531 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 C6P13671 934 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 PRKAR2AP13861 404 aaKnown RBP3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 ELNP15502 786 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 USP5P45974 858 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 ZYXQ15942 572 aaKnown RBP3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 AOC3Q16853 763 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 TMEM164Q5U3C3 297 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 FIBCD1Q8N539 461 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 TMEM169Q96HH4 297 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 CNTNAP3BQ96NU0 1288 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms