RNA–Protein interactions for RNA: ENST00000358544.6

VPS13B-203, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13B, Length 14,094 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-203ENST00000358544 STAT6P42226 847 aa6.78□□□□□ -1.32
VPS13B-203ENST00000358544 ALS2CLQ60I27 953 aa6.78□□□□□ -1.32
VPS13B-203ENST00000358544 PLVAPQ9BX97 442 aa6.78□□□□□ -1.32
VPS13B-203ENST00000358544 IFIH1Q9BYX4 1025 aaKnown RBP6.78□□□□□ -1.32
VPS13B-203ENST00000358544 SVILO95425 2214 aa6.78□□□□□ -1.32
VPS13B-203ENST00000358544 DNAJC8O75937 253 aaPredicted RBP6.78□□□□□ -1.32
VPS13B-203ENST00000358544 GOLGA8FQ08AF8 430 aa6.78□□□□□ -1.32
VPS13B-203ENST00000358544 GOLGA8DPQ0D2H9 430 aa6.78□□□□□ -1.32
VPS13B-203ENST00000358544 DHX32Q7L7V1 743 aaKnown RBP6.78□□□□□ -1.32
VPS13B-203ENST00000358544 APBB1IPQ7Z5R6 666 aaPredicted RBP6.78□□□□□ -1.32
VPS13B-203ENST00000358544 UTP11Q9Y3A2 253 aaKnown RBP6.78□□□□□ -1.32
VPS13B-203ENST00000358544 ZNF202O95125 648 aa6.78□□□□□ -1.32
VPS13B-203ENST00000358544 SF3B2Q13435 895 aaKnown RBP6.78□□□□□ -1.32
VPS13B-203ENST00000358544 CATIPQ7Z7H3 387 aa6.78□□□□□ -1.32
VPS13B-203ENST00000358544 JPH4Q96JJ6 628 aa6.78□□□□□ -1.32
VPS13B-203ENST00000358544 MMRN2Q9H8L6 949 aa6.78□□□□□ -1.32
VPS13B-203ENST00000358544 SNX14Q9Y5W7 946 aa6.78□□□□□ -1.32
VPS13B-203ENST00000358544 TTC21AQ8NDW8 1320 aa6.78□□□□□ -1.32
VPS13B-203ENST00000358544 HECW1Q76N89 1606 aa6.78□□□□□ -1.32
VPS13B-203ENST00000358544 SLFN14P0C7P3 912 aa6.78□□□□□ -1.32
VPS13B-203ENST00000358544 RNASE9P60153 205 aaKnown RBP6.78□□□□□ -1.32
VPS13B-203ENST00000358544 RASIP1Q5U651 963 aa6.78□□□□□ -1.32
VPS13B-203ENST00000358544 ADKP55263 362 aaKnown RBP6.78□□□□□ -1.32
VPS13B-203ENST00000358544 SREK1Q8WXA9 508 aaKnown RBP6.78□□□□□ -1.32
VPS13B-203ENST00000358544 G3V3G9 751 aa6.78□□□□□ -1.32
VPS13B-203ENST00000358544 GYS2P54840 703 aa6.78□□□□□ -1.32
VPS13B-203ENST00000358544 DCAF8Q5TAQ9 597 aa6.78□□□□□ -1.32
VPS13B-203ENST00000358544 CNOT10Q9H9A5 744 aaKnown RBP6.78□□□□□ -1.32
VPS13B-203ENST00000358544 VCX3AQ9NNX9 186 aa6.78□□□□□ -1.32
VPS13B-203ENST00000358544 TXLNGQ9NUQ3 528 aa6.78□□□□□ -1.32
VPS13B-203ENST00000358544 CTIFO43310 598 aaKnown RBP6.78□□□□□ -1.32
VPS13B-203ENST00000358544 POLE2P56282 527 aa6.78□□□□□ -1.32
VPS13B-203ENST00000358544 DDX21Q9NR30 783 aaKnown RBP eCLIP6.78□□□□□ -1.322e-21■■■■■ 83.8
VPS13B-203ENST00000358544 NUTM2BA6NNL0 878 aaPredicted RBP6.78□□□□□ -1.32
VPS13B-203ENST00000358544 NUTM2EB1AL46 878 aaPredicted RBP6.78□□□□□ -1.32
VPS13B-203ENST00000358544 CEP104O60308 925 aa6.78□□□□□ -1.32
VPS13B-203ENST00000358544 CCDC151A5D8V7 595 aa6.78□□□□□ -1.32
VPS13B-203ENST00000358544 DIXDC1Q155Q3 683 aa6.78□□□□□ -1.32
VPS13B-203ENST00000358544 CFAP221Q4G0U5 840 aa6.78□□□□□ -1.32
VPS13B-203ENST00000358544 RAPGEF4Q8WZA2 1011 aa6.78□□□□□ -1.32
VPS13B-203ENST00000358544 CNNM1Q9NRU3 951 aa6.78□□□□□ -1.32
VPS13B-203ENST00000358544 MIER3Q7Z3K6 550 aa6.77□□□□□ -1.32
VPS13B-203ENST00000358544 SCOCQ9UIL1 159 aa6.77□□□□□ -1.32
VPS13B-203ENST00000358544 PTPRKQ15262 1439 aa6.77□□□□□ -1.32
VPS13B-203ENST00000358544 TOP2BQ02880 1626 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 PRC1O43663 620 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 RPS6KB1P23443 525 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 EPHB4P54760 987 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 CALCOCO2Q13137 446 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 NBPF9Q3BBW0 867 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 ARMC9Q7Z3E5 817 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 IQUBQ8NA54 791 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 FAM212AQ96EL1 285 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 LRRC27Q9C0I9 530 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 PPP1R9AQ9ULJ8 1098 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 ACTN4O43707 911 aaKnown RBP6.77□□□□□ -1.33
VPS13B-203ENST00000358544 SF3A3Q12874 501 aaKnown RBP eCLIP6.77□□□□□ -1.33
VPS13B-203ENST00000358544 CASP8Q14790 479 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 C11orf57Q6ZUT1 292 aaPredicted RBP6.77□□□□□ -1.33
VPS13B-203ENST00000358544 GBP7Q8N8V2 638 aaPredicted RBP6.77□□□□□ -1.33
VPS13B-203ENST00000358544 ZMAT2Q96NC0 199 aaKnown RBP6.77□□□□□ -1.33
VPS13B-203ENST00000358544 ABCB6Q9NP58 842 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 I3L4J1 428 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 STX10O60499 249 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 ARID5AQ03989 594 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 TCP11L1Q9NUJ3 509 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 CETN1Q12798 172 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 PARP9Q8IXQ6 854 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 ALDH1L1O75891 902 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 NLRP6P59044 892 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 ESPL1Q14674 2120 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 NAA30Q147X3 362 aaPredicted RBP6.77□□□□□ -1.33
VPS13B-203ENST00000358544 SAAL1Q96ER3 474 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 LLPHQ9BRT6 129 aaKnown RBP6.77□□□□□ -1.33
VPS13B-203ENST00000358544 A0A1W2PQ27 194 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 A0A1W2PQ64 194 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 A0A1W2PQD8 194 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 TMEM132AQ24JP5 1023 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 ANKRD42Q8N9B4 389 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 CALML4Q96GE6 196 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 CTNNA1P35221 906 aaKnown RBP6.77□□□□□ -1.33
VPS13B-203ENST00000358544 CCDC144CPQ8IYA2 1237 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 CCDC97Q96F63 343 aaPredicted RBP6.77□□□□□ -1.33
VPS13B-203ENST00000358544 TESK2Q96S53 571 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 PALD1Q9ULE6 856 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 MSH6P52701 1360 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 SLC27A2O14975 620 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 PAK1Q13153 545 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 SEPT2Q15019 361 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 VPS52Q8N1B4 723 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 ERCC6Q03468 1493 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 RANBP6O60518 1105 aaKnown RBP6.77□□□□□ -1.33
VPS13B-203ENST00000358544 RASSF2P50749 326 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 RPS6KA1Q15418 735 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 TAOK1Q7L7X3 1001 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 TSPYL6Q8N831 410 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 CENPKQ9BS16 269 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 NAPBQ9H115 298 aa6.77□□□□□ -1.33
VPS13B-203ENST00000358544 NCOA5Q9HCD5 579 aaKnown RBP6.77□□□□□ -1.33
VPS13B-203ENST00000358544 MYO1AQ9UBC5 1043 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms