RNA–Protein interactions for RNA: ENSMUST00000005841.15

Ctcf-201, Transcript of Transcriptional repressor CTCF, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ctcf, Length 3,782 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ctcf-201ENSMUST00000005841 Lrrc6O88978 473 aa19.29■□□□□ 0.68
Ctcf-201ENSMUST00000005841 Tubb4bP68372 445 aaKnown RBP19.29■□□□□ 0.68
Ctcf-201ENSMUST00000005841 Ctr9Q62018 1173 aaKnown RBP19.29■□□□□ 0.68
Ctcf-201ENSMUST00000005841 Krt222Q8CCX5 294 aa19.29■□□□□ 0.68
Ctcf-201ENSMUST00000005841 Ciao1Q99KN2 339 aa19.29■□□□□ 0.68
Ctcf-201ENSMUST00000005841 Dnajc10Q9DC23 793 aa19.29■□□□□ 0.68
Ctcf-201ENSMUST00000005841 CluhQ5SW19 1315 aa19.29■□□□□ 0.68
Ctcf-201ENSMUST00000005841 LbrQ3U9G9 626 aaKnown RBP19.29■□□□□ 0.68
Ctcf-201ENSMUST00000005841 Fam84aQ9D650 292 aa19.29■□□□□ 0.68
Ctcf-201ENSMUST00000005841 Itga2bQ9QUM0 1033 aa19.29■□□□□ 0.68
Ctcf-201ENSMUST00000005841 Rbbp6P97868 1790 aaKnown RBP19.29■□□□□ 0.68
Ctcf-201ENSMUST00000005841 PappaQ8R4K8 1624 aa19.29■□□□□ 0.68
Ctcf-201ENSMUST00000005841 Neurod6P48986 337 aa19.29■□□□□ 0.68
Ctcf-201ENSMUST00000005841 Tsr1Q5SWD9 803 aa19.29■□□□□ 0.68
Ctcf-201ENSMUST00000005841 RarsQ9D0I9 660 aaKnown RBP19.29■□□□□ 0.68
Ctcf-201ENSMUST00000005841 Timm10P62073 90 aa19.28■□□□□ 0.68
Ctcf-201ENSMUST00000005841 Ccdc155Q80VJ8 648 aa19.28■□□□□ 0.68
Ctcf-201ENSMUST00000005841 Irx5Q9JKQ4 484 aa19.28■□□□□ 0.68
Ctcf-201ENSMUST00000005841 Ddx58Q6Q899 926 aa19.28■□□□□ 0.68
Ctcf-201ENSMUST00000005841 Ehd4Q9EQP2 541 aa19.28■□□□□ 0.68
Ctcf-201ENSMUST00000005841 Cwc15Q9JHS9 229 aaKnown RBP19.28■□□□□ 0.68
Ctcf-201ENSMUST00000005841 AK157302I3ITR1 129 aa19.28■□□□□ 0.68
Ctcf-201ENSMUST00000005841 Ckap2Q3V1H1 664 aa19.28■□□□□ 0.68
Ctcf-201ENSMUST00000005841 Acbd5Q5XG73 508 aa19.28■□□□□ 0.68
Ctcf-201ENSMUST00000005841 AidaQ8C4Q6 305 aa19.28■□□□□ 0.68
Ctcf-201ENSMUST00000005841 Isca1Q9D924 129 aa19.28■□□□□ 0.68
Ctcf-201ENSMUST00000005841 Npdc1Q64322 332 aa19.27■□□□□ 0.68
Ctcf-201ENSMUST00000005841 Luc7l2Q7TNC4 392 aaKnown RBP19.27■□□□□ 0.68
Ctcf-201ENSMUST00000005841 Edrf1Q6GQV7 1239 aa19.27■□□□□ 0.68
Ctcf-201ENSMUST00000005841 Prkab2Q6PAM0 271 aa19.27■□□□□ 0.68
Ctcf-201ENSMUST00000005841 Map3k11Q80XI6 850 aa19.27■□□□□ 0.68
Ctcf-201ENSMUST00000005841 Tcp11l1Q8BTG3 509 aa19.27■□□□□ 0.68
Ctcf-201ENSMUST00000005841 Mfap3lQ9D3X9 409 aa19.27■□□□□ 0.68
Ctcf-201ENSMUST00000005841 Foxn2E9Q7L6 429 aa19.27■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Acnat2Q8BGG9 420 aa19.27■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Bcl9Q9D219 1425 aa19.26■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Cyp26a1O55127 497 aa19.26■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Sox5P35710 763 aa19.26■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Atp1a2Q6PIE5 1020 aa19.26■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Tmem67Q8BR76 992 aa19.26■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Kcnq3Q8K3F6 873 aa19.26■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Ccdc12Q8R344 166 aaKnown RBP19.26■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Krt25Q8VCW2 446 aa19.26■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Dapk3O54784 448 aa19.26■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Adam6bQ6IMH7 756 aa19.26■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Baiap3Q80TT2 1134 aa19.26■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Tmco3Q8BH01 678 aa19.26■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Trim52Q8CDV4 233 aa19.26■□□□□ 0.67
Ctcf-201ENSMUST00000005841 GzmnQ920S1 248 aa19.26■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Cyp7b1Q60991 507 aa19.26■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Kcnh5Q920E3 988 aa19.26■□□□□ 0.67
Ctcf-201ENSMUST00000005841 PigbQ9JJQ0 542 aa19.26■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Ercc3P49135 783 aa19.25■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Krt86P97861 486 aa19.25■□□□□ 0.67
Ctcf-201ENSMUST00000005841 MmeQ61391 750 aa19.25■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Irx6Q9ER75 438 aa19.25■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Znf638Q61464 1960 aaKnown RBP19.25■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Evi5P97366 809 aa19.25■□□□□ 0.67
Ctcf-201ENSMUST00000005841 BcrQ6PAJ1 1270 aa19.25■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Nat10Q8K224 1024 aaKnown RBP19.25■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Scgb2b18A0A087WPA9 112 aa19.24■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Zfand4D3Z3C6 739 aa19.24■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Kifap3P70188 793 aa19.24■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Il17raQ60943 864 aa19.24■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Cct6bQ61390 531 aa19.24■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Tmem266Q8BZB3 538 aa19.24■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Znrd1-asQ8R0E5 213 aa19.24■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Gpr108Q91WD0 569 aa19.24■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Knop1Q9Z2Q2 478 aaKnown RBP19.24■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Lrrn2Q6PHP6 730 aa19.24■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Bola3Q8CEI1 110 aa19.24■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Phkg2Q9DB30 406 aa19.24■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Cep120Q7TSG1 988 aa19.24■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Cfap100Q80VN0 613 aa19.24■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Prl3d2F6R3P9 224 aa19.23■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Ppp4r3bQ922R5 820 aa19.23■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Ppp2r3dQ9Z176 491 aa19.23■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Tmx4Q8C0L0 335 aa19.23■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Bcl9lQ67FY2 1494 aa19.23■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Ulk4Q3V129 1303 aa19.23■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Gas2l3Q3UWW6 683 aa19.23■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Myh3P13541 1940 aa19.23■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Pde6aP27664 859 aa19.22■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Arhgef6Q8K4I3 771 aa19.22■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Cgref1Q8R1U2 281 aa19.22■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Casp12O08736 419 aa19.22■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Ranbp1P34022 203 aaKnown RBP19.22■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Olfr121Q5CZY0 321 aa19.22■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Spty2d1Q68FG3 682 aa19.22■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Cep55Q8BT07 462 aa19.22■□□□□ 0.67
Ctcf-201ENSMUST00000005841 TatQ8QZR1 454 aa19.22■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Pcdhb22Q91XZ8 794 aa19.22■□□□□ 0.67
Ctcf-201ENSMUST00000005841 IncenpQ9WU62 880 aa19.22■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Ppfia4B8QI36 1187 aa19.22■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Tspyl4Q8VD63 406 aa19.22■□□□□ 0.67
Ctcf-201ENSMUST00000005841 MycbpQ9EQS3 103 aa19.22■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Ctdspl2Q8BG15 465 aa19.21■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Fam177a1Q8BR63 207 aa19.21■□□□□ 0.67
Ctcf-201ENSMUST00000005841 CerkQ8K4Q7 531 aa19.21■□□□□ 0.67
Ctcf-201ENSMUST00000005841 Tmem39aQ9CYC3 486 aa19.21■□□□□ 0.67
Retrieved 100 of 22,080 RNA–protein pairs in 31.3 ms