RNA–Protein interactions for RNA: ENST00000531014.5

CTNND1-229, Transcript of catenin delta 1, humanhuman

TSL 1 (best) BASIC

Gene CTNND1, Length 5,053 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-229ENST00000531014 PLEKHD1A6NEE1 506 aa9.79□□□□□ -0.84
CTNND1-229ENST00000531014 HMGXB3Q12766 1538 aa9.78□□□□□ -0.84
CTNND1-229ENST00000531014 IFT140Q96RY7 1462 aa9.78□□□□□ -0.84
CTNND1-229ENST00000531014 ACIN1Q9UKV3 1341 aaKnown RBP9.78□□□□□ -0.84
CTNND1-229ENST00000531014 SLC24A1O60721 1099 aa9.77□□□□□ -0.85
CTNND1-229ENST00000531014 LAMC3Q9Y6N6 1575 aa9.77□□□□□ -0.85
CTNND1-229ENST00000531014 KCNH8Q96L42 1107 aa9.77□□□□□ -0.85
CTNND1-229ENST00000531014 ERICH6BQ5W0A0 696 aa9.77□□□□□ -0.85
CTNND1-229ENST00000531014 ANP32EQ9BTT0 268 aa9.76□□□□□ -0.85
CTNND1-229ENST00000531014 SMARCA4P51532 1647 aa9.74□□□□□ -0.85
CTNND1-229ENST00000531014 FAM69CQ0P6D2 419 aa9.73□□□□□ -0.85
CTNND1-229ENST00000531014 AMER1Q5JTC6 1135 aaPredicted RBP9.73□□□□□ -0.85
CTNND1-229ENST00000531014 NAP1L5Q96NT1 182 aaPredicted RBP9.72□□□□□ -0.85
CTNND1-229ENST00000531014 KIF27Q86VH2 1401 aa9.71□□□□□ -0.85
CTNND1-229ENST00000531014 SCAF1Q9H7N4 1312 aaKnown RBP9.71□□□□□ -0.86
CTNND1-229ENST00000531014 DNTTIP2Q5QJE6 756 aaKnown RBP9.7□□□□□ -0.86
CTNND1-229ENST00000531014 RSF1Q96T23 1441 aaPredicted RBP9.69□□□□□ -0.86
CTNND1-229ENST00000531014 PTMAP06454 111 aaKnown RBP9.68□□□□□ -0.86
CTNND1-229ENST00000531014 BICRAQ9NZM4 1560 aa9.67□□□□□ -0.86
CTNND1-229ENST00000531014 HDGFP51858 240 aaKnown RBP9.67□□□□□ -0.86
CTNND1-229ENST00000531014 ZNF326Q5BKZ1 582 aaKnown RBP9.67□□□□□ -0.86
CTNND1-229ENST00000531014 FKBP8Q14318 412 aa9.66□□□□□ -0.86
CTNND1-229ENST00000531014 ZNF777Q9ULD5 760 aaPredicted RBP9.66□□□□□ -0.86
CTNND1-229ENST00000531014 ARID3CA6NKF2 412 aa9.65□□□□□ -0.86
CTNND1-229ENST00000531014 C14orf37Q86TY3 774 aa9.65□□□□□ -0.86
CTNND1-229ENST00000531014 GOLGA6L22H0YM25 854 aa9.65□□□□□ -0.86
CTNND1-229ENST00000531014 TDRD9Q8NDG6 1382 aaKnown RBP9.65□□□□□ -0.87
CTNND1-229ENST00000531014 CALRP27797 417 aaKnown RBP9.63□□□□□ -0.87
CTNND1-229ENST00000531014 DCAF8L1A6NGE4 600 aa9.63□□□□□ -0.87
CTNND1-229ENST00000531014 MROH2BQ7Z745 1585 aa9.63□□□□□ -0.87
CTNND1-229ENST00000531014 TOP2AP11388 1531 aaKnown RBP9.62□□□□□ -0.87
CTNND1-229ENST00000531014 TNNT3P45378 269 aaPredicted RBP9.62□□□□□ -0.87
CTNND1-229ENST00000531014 JPH4Q96JJ6 628 aa9.62□□□□□ -0.87
CTNND1-229ENST00000531014 DMRT2Q9Y5R5 561 aa9.62□□□□□ -0.87
CTNND1-229ENST00000531014 P3H3Q8IVL6 736 aa9.61□□□□□ -0.87
CTNND1-229ENST00000531014 PHF23Q9BUL5 403 aaPredicted RBP9.61□□□□□ -0.87
CTNND1-229ENST00000531014 TSPY4P0CV99 314 aa9.61□□□□□ -0.87
CTNND1-229ENST00000531014 TSPY10P0CW01 314 aa9.61□□□□□ -0.87
CTNND1-229ENST00000531014 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.61□□□□□ -0.87
CTNND1-229ENST00000531014 ZRSR1Q15695 479 aaKnown RBP9.61□□□□□ -0.87
CTNND1-229ENST00000531014 GRIN2BQ13224 1484 aa9.61□□□□□ -0.87
CTNND1-229ENST00000531014 TRIM52Q96A61 297 aa9.6□□□□□ -0.87
CTNND1-229ENST00000531014 DDRGK1Q96HY6 314 aa9.6□□□□□ -0.87
CTNND1-229ENST00000531014 PPP1R15AO75807 674 aaPredicted RBP9.6□□□□□ -0.87
CTNND1-229ENST00000531014 NEUROD1Q13562 356 aa9.6□□□□□ -0.87
CTNND1-229ENST00000531014 BECN1Q14457 450 aa9.6□□□□□ -0.87
CTNND1-229ENST00000531014 POGZQ7Z3K3 1410 aa9.59□□□□□ -0.87
CTNND1-229ENST00000531014 CCDC136Q96JN2 1154 aa9.59□□□□□ -0.87
CTNND1-229ENST00000531014 PTPRGP23470 1445 aa9.58□□□□□ -0.88
CTNND1-229ENST00000531014 RTN4Q9NQC3 1192 aaKnown RBP9.57□□□□□ -0.88
CTNND1-229ENST00000531014 CSRNP3Q8WYN3 585 aa9.57□□□□□ -0.88
CTNND1-229ENST00000531014 CLIP1P30622 1438 aa9.57□□□□□ -0.88
CTNND1-229ENST00000531014 GOLGA3Q08378 1498 aa9.56□□□□□ -0.88
CTNND1-229ENST00000531014 SYNJ1O43426 1573 aa9.56□□□□□ -0.88
CTNND1-229ENST00000531014 NESP48681 1621 aa9.56□□□□□ -0.88
CTNND1-229ENST00000531014 MLECQ14165 292 aa9.55□□□□□ -0.88
CTNND1-229ENST00000531014 HAP1P54257 671 aaPredicted RBP9.55□□□□□ -0.88
CTNND1-229ENST00000531014 GOLGA6L6A8MZA4 724 aa9.55□□□□□ -0.88
CTNND1-229ENST00000531014 NRDCO43847 1150 aa9.55□□□□□ -0.88
CTNND1-229ENST00000531014 CHAF1AQ13111 956 aaPredicted RBP9.55□□□□□ -0.88
CTNND1-229ENST00000531014 PPM1GO15355 546 aaPredicted RBP9.54□□□□□ -0.88
CTNND1-229ENST00000531014 EFCAB2Q5VUJ9 269 aa9.53□□□□□ -0.88
CTNND1-229ENST00000531014 GAPVD1Q14C86 1478 aa9.53□□□□□ -0.88
CTNND1-229ENST00000531014 FAM50AQ14320 339 aaKnown RBP9.52□□□□□ -0.89
CTNND1-229ENST00000531014 CARMIL1Q5VZK9 1371 aa9.52□□□□□ -0.89
CTNND1-229ENST00000531014 CFTRP13569 1480 aa9.51□□□□□ -0.89
CTNND1-229ENST00000531014 CHGAP10645 457 aaKnown RBP9.5□□□□□ -0.89
CTNND1-229ENST00000531014 L1TD1Q5T7N2 865 aaKnown RBP9.5□□□□□ -0.89
CTNND1-229ENST00000531014 CCDC88BA6NC98 1476 aa9.49□□□□□ -0.89
CTNND1-229ENST00000531014 FHAD1B1AJZ9 1412 aa9.49□□□□□ -0.89
CTNND1-229ENST00000531014 HNRNPUQ00839 825 aaKnown RBP eCLIP9.48□□□□□ -0.89
CTNND1-229ENST00000531014 EID1Q9Y6B2 187 aa9.48□□□□□ -0.89
CTNND1-229ENST00000531014 EEA1Q15075 1411 aa9.47□□□□□ -0.89
CTNND1-229ENST00000531014 MYH16Q9H6N6 1097 aa9.47□□□□□ -0.89
CTNND1-229ENST00000531014 MAGI1Q96QZ7 1491 aaPredicted RBP9.47□□□□□ -0.89
CTNND1-229ENST00000531014 PTMSP20962 102 aa9.47□□□□□ -0.89
CTNND1-229ENST00000531014 AQRO60306 1485 aaKnown RBP eCLIP9.46□□□□□ -0.892e-9■■■□□ 18.1
CTNND1-229ENST00000531014 KANK1Q14678 1352 aa9.46□□□□□ -0.89
CTNND1-229ENST00000531014 TNIKQ9UKE5 1360 aa9.46□□□□□ -0.89
CTNND1-229ENST00000531014 PLCB2Q00722 1185 aa9.46□□□□□ -0.9
CTNND1-229ENST00000531014 MSNP26038 577 aaKnown RBP9.45□□□□□ -0.9
CTNND1-229ENST00000531014 MEX3CQ5U5Q3 659 aaKnown RBP9.45□□□□□ -0.9
CTNND1-229ENST00000531014 TEX14Q8IWB6 1497 aa9.44□□□□□ -0.9
CTNND1-229ENST00000531014 UNC13AQ9UPW8 1703 aa9.43□□□□□ -0.9
CTNND1-229ENST00000531014 MTUS2Q5JR59 1369 aa9.43□□□□□ -0.9
CTNND1-229ENST00000531014 PRG4Q92954 1404 aaPredicted RBP9.43□□□□□ -0.9
CTNND1-229ENST00000531014 SYNJ2O15056 1496 aa9.42□□□□□ -0.9
CTNND1-229ENST00000531014 DNMBPQ6XZF7 1577 aa9.42□□□□□ -0.9
CTNND1-229ENST00000531014 LOC105371045A0A1W2PR82 267 aa9.42□□□□□ -0.9
CTNND1-229ENST00000531014 SNAPC4Q5SXM2 1469 aa9.42□□□□□ -0.9
CTNND1-229ENST00000531014 TOPBP1Q92547 1522 aa9.41□□□□□ -0.9
CTNND1-229ENST00000531014 FGD5Q6ZNL6 1462 aa9.41□□□□□ -0.9
CTNND1-229ENST00000531014 CFDP1Q9UEE9 299 aaPredicted RBP9.41□□□□□ -0.9
CTNND1-229ENST00000531014 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.4□□□□□ -0.91e-8■■□□□ 13.5
CTNND1-229ENST00000531014 SETQ01105 290 aaPredicted RBP9.4□□□□□ -0.9
CTNND1-229ENST00000531014 PNNQ9H307 717 aaKnown RBP9.4□□□□□ -0.9
CTNND1-229ENST00000531014 TULP1O00294 542 aaPredicted RBP9.39□□□□□ -0.91
CTNND1-229ENST00000531014 FAM9BQ8IZU0 186 aa9.39□□□□□ -0.91
CTNND1-229ENST00000531014 A0A0G2JS52 829 aa9.39□□□□□ -0.91
CTNND1-229ENST00000531014 NOC3LQ8WTT2 800 aaKnown RBP9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms