RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 PET117Q6UWS5 81 aa15.05■□□□□ 0
CLN3-209ENST00000561689 TOMM6Q96B49 74 aa15.05■□□□□ 0
CLN3-209ENST00000561689 TP53TG1Q9Y2A0 90 aa15.05■□□□□ 0
CLN3-209ENST00000561689 UQCR10Q9UDW1 63 aa15.05■□□□□ -0
CLN3-209ENST00000561689 TRBV7-3A0A075B6L6 115 aa15.04■□□□□ -0
CLN3-209ENST00000561689 TRBV10-1A0A0K0K1A3 114 aa15.04■□□□□ -0
CLN3-209ENST00000561689 hDV102S1A0JD36 115 aa15.04■□□□□ -0
CLN3-209ENST00000561689 TRBV6-4A0A1B0GX49 114 aa15.04■□□□□ -0
CLN3-209ENST00000561689 C20orf202A1L168 122 aa15.04■□□□□ -0
CLN3-209ENST00000561689 GAGE12JA6NER3 117 aa15.04■□□□□ -0
CLN3-209ENST00000561689 GAGE1Q13065 139 aa15.04■□□□□ -0
CLN3-209ENST00000561689 GAGE4Q13068 117 aa15.04■□□□□ -0
CLN3-209ENST00000561689 GAGE5Q13069 117 aa15.04■□□□□ -0
CLN3-209ENST00000561689 GAGE13Q4V321 117 aa15.04■□□□□ -0
CLN3-209ENST00000561689 LBHQ53QV2 105 aaPredicted RBP15.04■□□□□ -0
CLN3-209ENST00000561689 LOC100131303A0A0U1RQF7 123 aa15.03■□□□□ -0
CLN3-209ENST00000561689 RPL39P62891 51 aaKnown RBP15.03■□□□□ -0
CLN3-209ENST00000561689 RPL36AP83881 106 aaKnown RBP15.03■□□□□ -0
CLN3-209ENST00000561689 DEFB121Q5J5C9 76 aa15.03■□□□□ -0
CLN3-209ENST00000561689 LINC01545Q5VT33 79 aa15.03■□□□□ -0
CLN3-209ENST00000561689 SBSPONQ8IVN8 264 aa15.03■□□□□ -0
CLN3-209ENST00000561689 RPL36ALQ969Q0 106 aaKnown RBP15.03■□□□□ -0
CLN3-209ENST00000561689 SCGB3A1Q96QR1 104 aa15.03■□□□□ -0
CLN3-209ENST00000561689 DAD1P61803 113 aa15.02■□□□□ -0
CLN3-209ENST00000561689 CYSLTR1Q9Y271 337 aa15.02■□□□□ -0
CLN3-209ENST00000561689 ATP5LO75964 103 aa15.02□□□□□ -0.01
CLN3-209ENST00000561689 SPART-AS1P0CW21 52 aa15.02□□□□□ -0.01
CLN3-209ENST00000561689 RHOHQ15669 191 aa15.02□□□□□ -0.01
CLN3-209ENST00000561689 Q6ZN92 141 aa15.02□□□□□ -0.01
CLN3-209ENST00000561689 TP73-AS1Q9UF72 201 aa15.02□□□□□ -0.01
CLN3-209ENST00000561689 HHLA3Q9XRX5 114 aa15.02□□□□□ -0.01
CLN3-209ENST00000561689 PRSS1P07477 247 aa15□□□□□ -0.01
CLN3-209ENST00000561689 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP15□□□□□ -0.01
CLN3-209ENST00000561689 G0S2P27469 103 aa15□□□□□ -0.01
CLN3-209ENST00000561689 UBE2D3P61077 147 aa14.99□□□□□ -0.01
CLN3-209ENST00000561689 UBE2D2P62837 147 aa14.99□□□□□ -0.01
CLN3-209ENST00000561689 MRAPQ8TCY5 172 aa14.99□□□□□ -0.01
CLN3-209ENST00000561689 COTL1Q14019 142 aa14.98□□□□□ -0.01
CLN3-209ENST00000561689 C20orf203Q8NBC4 194 aa14.98□□□□□ -0.01
CLN3-209ENST00000561689 PRADC1Q9BSG0 188 aa14.98□□□□□ -0.01
CLN3-209ENST00000561689 HNRNPA3P51991 378 aaKnown RBP14.98□□□□□ -0.01
CLN3-209ENST00000561689 ERASQ7Z444 233 aa14.97□□□□□ -0.01
CLN3-209ENST00000561689 MRPL52Q86TS9 123 aaKnown RBP14.97□□□□□ -0.01
CLN3-209ENST00000561689 BATFQ16520 125 aa14.96□□□□□ -0.01
CLN3-209ENST00000561689 IGIPA6NJ69 53 aa14.96□□□□□ -0.01
CLN3-209ENST00000561689 CRYBA4P53673 196 aa14.96□□□□□ -0.01
CLN3-209ENST00000561689 DAZ4Q86SG3 579 aaKnown RBP14.96□□□□□ -0.01
CLN3-209ENST00000561689 CHCHD7Q9BUK0 85 aa14.96□□□□□ -0.01
CLN3-209ENST00000561689 DAZ3Q9NR90 486 aaKnown RBP14.96□□□□□ -0.01
CLN3-209ENST00000561689 LGALS9CQ6DKI2 356 aa14.95□□□□□ -0.02
CLN3-209ENST00000561689 PRO0255Q9UI72 69 aa14.95□□□□□ -0.02
CLN3-209ENST00000561689 TENM3Q9P273 2699 aa14.95□□□□□ -0.02
CLN3-209ENST00000561689 ATP5G1P05496 136 aa14.94□□□□□ -0.02
CLN3-209ENST00000561689 HTN3P15516 51 aa14.94□□□□□ -0.02
CLN3-209ENST00000561689 ZMAT4Q9H898 229 aa14.94□□□□□ -0.02
CLN3-209ENST00000561689 GYPEP15421 78 aa14.93□□□□□ -0.02
CLN3-209ENST00000561689 ODF1Q14990 250 aa14.93□□□□□ -0.02
CLN3-209ENST00000561689 BAALCQ8WXS3 180 aa14.93□□□□□ -0.02
CLN3-209ENST00000561689 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.93□□□□□ -0.02
CLN3-209ENST00000561689 IGKV2-29A2NJV5 120 aaPredicted RBP14.93□□□□□ -0.02
CLN3-209ENST00000561689 LINC01549A6NIU2 74 aa14.93□□□□□ -0.02
CLN3-209ENST00000561689 NTM-AS1Q6ZSK4 140 aa14.93□□□□□ -0.02
CLN3-209ENST00000561689 A0A0J9YY99 117 aa14.92□□□□□ -0.02
CLN3-209ENST00000561689 HSBP1L1C9JCN9 74 aa14.92□□□□□ -0.02
CLN3-209ENST00000561689 F5H768 121 aa14.92□□□□□ -0.02
CLN3-209ENST00000561689 PAX4O43316 350 aa14.92□□□□□ -0.02
CLN3-209ENST00000561689 C12orf74Q32Q52 190 aa14.92□□□□□ -0.02
CLN3-209ENST00000561689 TIMM17AQ99595 171 aa14.92□□□□□ -0.02
CLN3-209ENST00000561689 OPRPNQ99935 248 aaPredicted RBP14.92□□□□□ -0.02
CLN3-209ENST00000561689 DNHD1Q96M86 4753 aa14.92□□□□□ -0.02
CLN3-209ENST00000561689 A0A0J9YWU9 116 aa14.91□□□□□ -0.02
CLN3-209ENST00000561689 SPATA25Q9BR10 227 aa14.91□□□□□ -0.02
CLN3-209ENST00000561689 C11orf68Q9H3H3 251 aaKnown RBP14.91□□□□□ -0.02
CLN3-209ENST00000561689 TEX48A0A1B0GUV7 120 aa14.91□□□□□ -0.02
CLN3-209ENST00000561689 LINC00694P0DN24 101 aa14.91□□□□□ -0.02
CLN3-209ENST00000561689 ZC2HC1BQ5TFG8 222 aa14.91□□□□□ -0.02
CLN3-209ENST00000561689 CEMP1Q6PRD7 247 aaPredicted RBP14.91□□□□□ -0.02
CLN3-209ENST00000561689 TMEM141Q96I45 108 aa14.91□□□□□ -0.02
CLN3-209ENST00000561689 VSIG2Q96IQ7 327 aa14.9□□□□□ -0.02
CLN3-209ENST00000561689 TM2D3Q9BRN9 247 aa14.9□□□□□ -0.02
CLN3-209ENST00000561689 MRPS16Q9Y3D3 137 aaKnown RBP14.9□□□□□ -0.02
CLN3-209ENST00000561689 A0A087WX48 190 aa14.89□□□□□ -0.03
CLN3-209ENST00000561689 MRPL35Q9NZE8 188 aaKnown RBP14.89□□□□□ -0.03
CLN3-209ENST00000561689 TRAV26-1A0A087WT03 109 aa14.89□□□□□ -0.03
CLN3-209ENST00000561689 TRAV12-1A0A0B4J245 112 aa14.88□□□□□ -0.03
CLN3-209ENST00000561689 PRSS29PA6NIE9 313 aa14.88□□□□□ -0.03
CLN3-209ENST00000561689 ANKRD39Q53RE8 183 aa14.87□□□□□ -0.03
CLN3-209ENST00000561689 STPG4Q8N801 248 aa14.87□□□□□ -0.03
CLN3-209ENST00000561689 A0A096LPF7 62 aa14.87□□□□□ -0.03
CLN3-209ENST00000561689 HINT1P49773 126 aaPredicted RBP14.87□□□□□ -0.03
CLN3-209ENST00000561689 GTSF1LQ9H1H1 148 aa14.87□□□□□ -0.03
CLN3-209ENST00000561689 SLC25A34Q6PIV7 304 aa14.86□□□□□ -0.03
CLN3-209ENST00000561689 UBE2D4Q9Y2X8 147 aa14.86□□□□□ -0.03
CLN3-209ENST00000561689 CHTOPQ9Y3Y2 248 aaKnown RBP14.86□□□□□ -0.03
CLN3-209ENST00000561689 IGLV4-3A0A075B6K6 122 aa14.85□□□□□ -0.03
CLN3-209ENST00000561689 TCTAP57738 103 aa14.85□□□□□ -0.03
CLN3-209ENST00000561689 ATP6V0E2Q8NHE4 81 aa14.85□□□□□ -0.03
CLN3-209ENST00000561689 CST9LQ9H4G1 147 aa14.85□□□□□ -0.03
CLN3-209ENST00000561689 PYGO1Q9Y3Y4 419 aa14.85□□□□□ -0.03
CLN3-209ENST00000561689 PMVKQ15126 192 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms