RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 MIAQ16674 131 aa9.53□□□□□ -0.88
SFSWAP-209ENST00000540469 SPINK13Q1W4C9 94 aa9.53□□□□□ -0.88
SFSWAP-209ENST00000540469 POM121L12Q8N7R1 296 aa9.53□□□□□ -0.88
SFSWAP-209ENST00000540469 ZNF625Q96I27 306 aaPredicted RBP9.53□□□□□ -0.88
SFSWAP-209ENST00000540469 A0A0J9YX75 114 aa9.52□□□□□ -0.88
SFSWAP-209ENST00000540469 LST1O00453 97 aa9.52□□□□□ -0.88
SFSWAP-209ENST00000540469 BRD3OSQ6XYD6 125 aa9.52□□□□□ -0.89
SFSWAP-209ENST00000540469 DAZ1Q9NQZ3 744 aaKnown RBP9.52□□□□□ -0.89
SFSWAP-209ENST00000540469 IGHV1-58A0A0C4DH39 117 aa9.52□□□□□ -0.89
SFSWAP-209ENST00000540469 KLLNB2CW77 178 aa9.52□□□□□ -0.89
SFSWAP-209ENST00000540469 CSDC2Q9Y534 153 aaKnown RBP9.52□□□□□ -0.89
SFSWAP-209ENST00000540469 RS1O15537 224 aa9.51□□□□□ -0.89
SFSWAP-209ENST00000540469 CIRBPQ14011 172 aaKnown RBP9.51□□□□□ -0.89
SFSWAP-209ENST00000540469 DOPEY2Q9Y3R5 2298 aa9.51□□□□□ -0.89
SFSWAP-209ENST00000540469 FAM19A4Q96LR4 140 aa9.51□□□□□ -0.89
SFSWAP-209ENST00000540469 NOTCH3Q9UM47 2321 aa9.51□□□□□ -0.89
SFSWAP-209ENST00000540469 IGHV3-16A0A0C4DH30 117 aa9.51□□□□□ -0.89
SFSWAP-209ENST00000540469 FAM240AA0A1B0GVK7 77 aa9.51□□□□□ -0.89
SFSWAP-209ENST00000540469 DGAT2L7PQ6IED9 249 aa9.51□□□□□ -0.89
SFSWAP-209ENST00000540469 TMEM61Q8N0U2 210 aa9.51□□□□□ -0.89
SFSWAP-209ENST00000540469 EDA2RQ9HAV5 297 aa9.5□□□□□ -0.89
SFSWAP-209ENST00000540469 KNCNA6PVL3 124 aa9.5□□□□□ -0.89
SFSWAP-209ENST00000540469 ZNF462Q96JM2 2506 aa9.5□□□□□ -0.89
SFSWAP-209ENST00000540469 USP24Q9UPU5 2620 aa9.5□□□□□ -0.89
SFSWAP-209ENST00000540469 IGHV1OR15-1A0A075B7D0 117 aa9.49□□□□□ -0.89
SFSWAP-209ENST00000540469 EDN2P20800 178 aa9.49□□□□□ -0.89
SFSWAP-209ENST00000540469 IGF2-ASQ6U949 168 aa9.49□□□□□ -0.89
SFSWAP-209ENST00000540469 CFAP46Q8IYW2 2715 aa9.49□□□□□ -0.89
SFSWAP-209ENST00000540469 APRG1Q8IVJ8 170 aa9.49□□□□□ -0.89
SFSWAP-209ENST00000540469 SNRPD3P62318 126 aaKnown RBP9.49□□□□□ -0.89
SFSWAP-209ENST00000540469 LRRK2Q5S007 2527 aa9.48□□□□□ -0.89
SFSWAP-209ENST00000540469 LITAFQ99732 161 aa9.48□□□□□ -0.89
SFSWAP-209ENST00000540469 SPANXDQ9BXN6 97 aa9.48□□□□□ -0.89
SFSWAP-209ENST00000540469 SPANXCQ9NY87 97 aa9.48□□□□□ -0.89
SFSWAP-209ENST00000540469 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.48□□□□□ -0.89
SFSWAP-209ENST00000540469 IGKV2-29A2NJV5 120 aaPredicted RBP9.48□□□□□ -0.89
SFSWAP-209ENST00000540469 VSIG2Q96IQ7 327 aa9.48□□□□□ -0.89
SFSWAP-209ENST00000540469 USMG5Q96IX5 58 aa9.48□□□□□ -0.89
SFSWAP-209ENST00000540469 LINC01587Q99440 93 aa9.48□□□□□ -0.89
SFSWAP-209ENST00000540469 BPESC1Q9GZL8 116 aa9.48□□□□□ -0.89
SFSWAP-209ENST00000540469 IGSF10Q6WRI0 2623 aa9.48□□□□□ -0.89
SFSWAP-209ENST00000540469 HIVEP3Q5T1R4 2406 aa9.48□□□□□ -0.89
SFSWAP-209ENST00000540469 TRBV7-7A0A0K0K1E9 115 aa9.47□□□□□ -0.89
SFSWAP-209ENST00000540469 ACYP1P07311 99 aa9.47□□□□□ -0.89
SFSWAP-209ENST00000540469 C9orf85Q96MD7 179 aa9.47□□□□□ -0.89
SFSWAP-209ENST00000540469 MRPS36P82909 103 aaKnown RBP9.47□□□□□ -0.89
SFSWAP-209ENST00000540469 KLRB1Q12918 225 aa9.47□□□□□ -0.89
SFSWAP-209ENST00000540469 C2CD3Q4AC94 2353 aa9.46□□□□□ -0.89
SFSWAP-209ENST00000540469 CSPG4Q6UVK1 2322 aa9.46□□□□□ -0.89
SFSWAP-209ENST00000540469 IGHV3-38A0A0C4DH36 116 aa9.46□□□□□ -0.89
SFSWAP-209ENST00000540469 PROK1P58294 105 aa9.46□□□□□ -0.89
SFSWAP-209ENST00000540469 GAGE2AQ6NT46 116 aa9.46□□□□□ -0.89
SFSWAP-209ENST00000540469 CUBNO60494 3623 aa9.46□□□□□ -0.89
SFSWAP-209ENST00000540469 FLNCQ14315 2725 aa9.46□□□□□ -0.9
SFSWAP-209ENST00000540469 KLK9Q2XQG4 91 aa9.45□□□□□ -0.9
SFSWAP-209ENST00000540469 CDSNQ15517 529 aa9.45□□□□□ -0.9
SFSWAP-209ENST00000540469 FAM19A5Q7Z5A7 132 aaPredicted RBP9.45□□□□□ -0.9
SFSWAP-209ENST00000540469 LINC00643Q86TS7 51 aa9.45□□□□□ -0.9
SFSWAP-209ENST00000540469 C3orf22Q8N5N4 141 aa9.45□□□□□ -0.9
SFSWAP-209ENST00000540469 H3BUX3 64 aa9.44□□□□□ -0.9
SFSWAP-209ENST00000540469 HERVK_113P63121 156 aa9.44□□□□□ -0.9
SFSWAP-209ENST00000540469 NDUFA7O95182 113 aa9.44□□□□□ -0.9
SFSWAP-209ENST00000540469 DAZ2Q13117 558 aaKnown RBP9.44□□□□□ -0.9
SFSWAP-209ENST00000540469 C11orf71Q6IPW1 123 aa9.44□□□□□ -0.9
SFSWAP-209ENST00000540469 DAZ4Q86SG3 579 aaKnown RBP9.44□□□□□ -0.9
SFSWAP-209ENST00000540469 Q9H8V8 135 aa9.44□□□□□ -0.9
SFSWAP-209ENST00000540469 DAZ3Q9NR90 486 aaKnown RBP9.44□□□□□ -0.9
SFSWAP-209ENST00000540469 NOTCH2Q04721 2471 aa9.44□□□□□ -0.9
SFSWAP-209ENST00000540469 BAALC-AS2P0C853 105 aa9.44□□□□□ -0.9
SFSWAP-209ENST00000540469 BLCAPP62952 87 aa9.44□□□□□ -0.9
SFSWAP-209ENST00000540469 CDKN2A-AS1Q9UH64 79 aa9.44□□□□□ -0.9
SFSWAP-209ENST00000540469 K7ENP7 123 aa9.43□□□□□ -0.9
SFSWAP-209ENST00000540469 LINC01600Q96MT4 127 aa9.43□□□□□ -0.9
SFSWAP-209ENST00000540469 TINCRA0A1B0GVN0 87 aa9.43□□□□□ -0.9
SFSWAP-209ENST00000540469 UQCRQO14949 82 aa9.43□□□□□ -0.9
SFSWAP-209ENST00000540469 IMUPQ9GZP8 106 aa9.43□□□□□ -0.9
SFSWAP-209ENST00000540469 PYGO1Q9Y3Y4 419 aa9.43□□□□□ -0.9
SFSWAP-209ENST00000540469 DCANP1Q8TF63 244 aa9.43□□□□□ -0.9
SFSWAP-209ENST00000540469 UTP20O75691 2785 aaKnown RBP9.42□□□□□ -0.9
SFSWAP-209ENST00000540469 COX7A2LO14548 114 aa9.42□□□□□ -0.9
SFSWAP-209ENST00000540469 NRGNQ92686 78 aa9.42□□□□□ -0.9
SFSWAP-209ENST00000540469 CHD6Q8TD26 2715 aa9.42□□□□□ -0.9
SFSWAP-209ENST00000540469 FASNP49327 2511 aaKnown RBP9.42□□□□□ -0.9
SFSWAP-209ENST00000540469 POLQO75417 2590 aa9.42□□□□□ -0.9
SFSWAP-209ENST00000540469 SMIM9A6NGZ8 99 aa9.42□□□□□ -0.9
SFSWAP-209ENST00000540469 C5orf47Q569G3 176 aa9.42□□□□□ -0.9
SFSWAP-209ENST00000540469 DEFB121Q5J5C9 76 aa9.41□□□□□ -0.9
SFSWAP-209ENST00000540469 PRIMA1Q86XR5 153 aa9.41□□□□□ -0.9
SFSWAP-209ENST00000540469 LINC00308Q8TCZ7 52 aa9.41□□□□□ -0.9
SFSWAP-209ENST00000540469 SMCR5Q8TEV8 140 aa9.4□□□□□ -0.9
SFSWAP-209ENST00000540469 CRYBG3Q68DQ2 2970 aa9.4□□□□□ -0.9
SFSWAP-209ENST00000540469 PRB1P04280 392 aa9.4□□□□□ -0.9
SFSWAP-209ENST00000540469 HOXD3P31249 432 aaPredicted RBP9.4□□□□□ -0.9
SFSWAP-209ENST00000540469 SYNJ2BPP57105 145 aa9.4□□□□□ -0.91
SFSWAP-209ENST00000540469 FBXL19-AS1Q494R0 122 aa9.4□□□□□ -0.91
SFSWAP-209ENST00000540469 COPS9Q8WXC6 57 aa9.4□□□□□ -0.91
SFSWAP-209ENST00000540469 DNAJC30Q96LL9 226 aa9.4□□□□□ -0.91
SFSWAP-209ENST00000540469 LINC00467Q9BRT7 94 aa9.4□□□□□ -0.91
SFSWAP-209ENST00000540469 PTPN13Q12923 2485 aa9.4□□□□□ -0.91
SFSWAP-209ENST00000540469 DNAL4O96015 105 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms