RNA–Protein interactions for RNA: ENST00000525878.5

CSDE1-210, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 626 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-210ENST00000525878 LAMA3Q16787 3333 aa-0.49□□□□□ -2.49
CSDE1-210ENST00000525878 SCN7AQ01118 1682 aa-0.49□□□□□ -2.49
CSDE1-210ENST00000525878 COL4A6Q14031 1691 aa-0.49□□□□□ -2.49
CSDE1-210ENST00000525878 PHLPP1O60346 1717 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 KIAA1551Q9HCM1 1747 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 COL14A1Q05707 1796 aaKnown RBP-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 TEX15Q9BXT5 2789 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 PKD1L2Q7Z442 2459 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 TRAV1-2A0A0B4J238 106 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 TMEM238C9JI98 176 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 BCE1O60756 84 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 SERPINB1P30740 379 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 EDDM3BP56851 147 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 TCTAP57738 103 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 SPCS2Q15005 226 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 C3orf33Q6P1S2 294 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 DCUN1D2Q6PH85 259 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 TMEM91Q6ZNR0 172 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 TMED4Q7Z7H5 227 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 CROCCP2Q86T23 111 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 STX12Q86Y82 276 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 SNX29P2Q8IUI4 249 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 ATP6V0E2Q8NHE4 81 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 DYNLRB2Q8TF09 96 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 DYDC1Q8WWB3 177 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 CEP19Q96LK0 163 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 CCDC115Q96NT0 180 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 VPS25Q9BRG1 176 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 TP53AIP1Q9HCN2 124 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 SCP2D1Q9UJQ7 156 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 ERG28Q9UKR5 140 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 TRAPPC2LQ9UL33 140 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 NIPBLQ6KC79 2804 aaeCLIP-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 OVOS2A0A0G2JMS6 1433 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 DNAH8Q96JB1 4490 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 RAPGEF6Q8TEU7 1601 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 MYOM1P52179 1685 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 QRICH2Q9H0J4 1663 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 PDE4DIPQ5VU43 2346 aa-0.5□□□□□ -2.49
CSDE1-210ENST00000525878 AKAP13Q12802 2813 aa-0.51□□□□□ -2.49
CSDE1-210ENST00000525878 CCDC179H3BU77 68 aa-0.51□□□□□ -2.49
CSDE1-210ENST00000525878 M0R2T5 61 aa-0.51□□□□□ -2.49
CSDE1-210ENST00000525878 FAM107AO95990 144 aa-0.51□□□□□ -2.49
CSDE1-210ENST00000525878 HIST1H1BP16401 226 aaKnown RBP-0.51□□□□□ -2.49
CSDE1-210ENST00000525878 SPRR1BP22528 89 aa-0.51□□□□□ -2.49
CSDE1-210ENST00000525878 MRC1P22897 1456 aa-0.51□□□□□ -2.49
CSDE1-210ENST00000525878 UBE2D1P51668 147 aa-0.51□□□□□ -2.49
CSDE1-210ENST00000525878 LINC01545Q5VT33 79 aa-0.51□□□□□ -2.49
CSDE1-210ENST00000525878 SPAG11AQ6PDA7 123 aa-0.51□□□□□ -2.49
CSDE1-210ENST00000525878 ATP11AUNQ6ZP68 121 aa-0.51□□□□□ -2.49
CSDE1-210ENST00000525878 MNS1Q8NEH6 495 aa-0.51□□□□□ -2.49
CSDE1-210ENST00000525878 C10orf82Q8WW14 230 aa-0.51□□□□□ -2.49
CSDE1-210ENST00000525878 SDF2Q99470 211 aa-0.51□□□□□ -2.49
CSDE1-210ENST00000525878 TULP4Q9NRJ4 1543 aa-0.51□□□□□ -2.49
CSDE1-210ENST00000525878 LSM2Q9Y333 95 aaKnown RBP-0.51□□□□□ -2.49
CSDE1-210ENST00000525878 NOP16Q9Y3C1 178 aaKnown RBP-0.51□□□□□ -2.49
CSDE1-210ENST00000525878 WDR7Q9Y4E6 1490 aa-0.51□□□□□ -2.49
CSDE1-210ENST00000525878 SPCS1Q9Y6A9 102 aa-0.51□□□□□ -2.49
CSDE1-210ENST00000525878 CASKIN1Q8WXD9 1431 aa-0.52□□□□□ -2.49
CSDE1-210ENST00000525878 TRBV6-1A0A0K0K1D8 114 aa-0.52□□□□□ -2.49
CSDE1-210ENST00000525878 E7EQ34 232 aa-0.52□□□□□ -2.49
CSDE1-210ENST00000525878 J3QLW9 94 aa-0.52□□□□□ -2.49
CSDE1-210ENST00000525878 PITX3O75364 302 aa-0.52□□□□□ -2.49
CSDE1-210ENST00000525878 HLA-DRB4P13762 266 aa-0.52□□□□□ -2.49
CSDE1-210ENST00000525878 CCL18P55774 89 aa-0.52□□□□□ -2.49
CSDE1-210ENST00000525878 LSM3P62310 102 aaKnown RBP-0.52□□□□□ -2.49
CSDE1-210ENST00000525878 MRPS25P82663 173 aaKnown RBP-0.52□□□□□ -2.49
CSDE1-210ENST00000525878 CFAP126Q5VTH2 177 aa-0.52□□□□□ -2.49
CSDE1-210ENST00000525878 TOMM20LQ6UXN7 152 aa-0.52□□□□□ -2.49
CSDE1-210ENST00000525878 BAGE3Q86Y29 109 aa-0.52□□□□□ -2.49
CSDE1-210ENST00000525878 DEFB123Q8N688 67 aa-0.52□□□□□ -2.49
CSDE1-210ENST00000525878 CHMP6Q96FZ7 201 aa-0.52□□□□□ -2.49
CSDE1-210ENST00000525878 CCDC32Q9BV29 185 aa-0.52□□□□□ -2.49
CSDE1-210ENST00000525878 AGPAT4-IT1Q9H0P7 198 aa-0.52□□□□□ -2.49
CSDE1-210ENST00000525878 SCN3BQ9NY72 215 aa-0.52□□□□□ -2.49
CSDE1-210ENST00000525878 SMPXQ9UHP9 88 aa-0.52□□□□□ -2.49
CSDE1-210ENST00000525878 NDUFA12Q9UI09 145 aa-0.52□□□□□ -2.49
CSDE1-210ENST00000525878 STOML2Q9UJZ1 356 aa-0.52□□□□□ -2.49
CSDE1-210ENST00000525878 HLA-DRB4X5D2U9 266 aa-0.52□□□□□ -2.49
CSDE1-210ENST00000525878 ABCA13Q86UQ4 5058 aa-0.52□□□□□ -2.49
CSDE1-210ENST00000525878 SPENQ96T58 3664 aaKnown RBP-0.52□□□□□ -2.49
CSDE1-210ENST00000525878 XRN1Q8IZH2 1706 aaKnown RBP-0.52□□□□□ -2.49
CSDE1-210ENST00000525878 LRRK2Q5S007 2527 aa-0.53□□□□□ -2.49
CSDE1-210ENST00000525878 ADAMTS12P58397 1594 aa-0.53□□□□□ -2.49
CSDE1-210ENST00000525878 ARHGEF12Q9NZN5 1544 aa-0.53□□□□□ -2.49
CSDE1-210ENST00000525878 GAPVD1Q14C86 1478 aa-0.53□□□□□ -2.49
CSDE1-210ENST00000525878 ANKRD11Q6UB99 2663 aaPredicted RBP-0.53□□□□□ -2.49
CSDE1-210ENST00000525878 LOC730098B7Z3J9 87 aa-0.53□□□□□ -2.49
CSDE1-210ENST00000525878 MT-ND4LP03901 98 aa-0.53□□□□□ -2.49
CSDE1-210ENST00000525878 PSPHP78330 225 aa-0.53□□□□□ -2.49
CSDE1-210ENST00000525878 C9orf116Q5BN46 136 aaPredicted RBP-0.53□□□□□ -2.49
CSDE1-210ENST00000525878 CLLU1Q5K131 121 aa-0.53□□□□□ -2.49
CSDE1-210ENST00000525878 OR9Q1Q8NGQ5 310 aa-0.53□□□□□ -2.49
CSDE1-210ENST00000525878 BANF2Q9H503 90 aa-0.53□□□□□ -2.49
CSDE1-210ENST00000525878 LINC00472Q9H8W2 130 aa-0.53□□□□□ -2.49
CSDE1-210ENST00000525878 GID8Q9NWU2 228 aa-0.53□□□□□ -2.49
CSDE1-210ENST00000525878 CCDC168Q8NDH2 2452 aa-0.53□□□□□ -2.49
CSDE1-210ENST00000525878 ROBO1Q9Y6N7 1651 aa-0.53□□□□□ -2.49
CSDE1-210ENST00000525878 PTPN23Q9H3S7 1636 aa-0.53□□□□□ -2.49
CSDE1-210ENST00000525878 SPTBN5Q9NRC6 3674 aaKnown RBP-0.53□□□□□ -2.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms