RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 Q6ZUT4 128 aa14.42□□□□□ -0.1
COL27A1-207ENST00000494090 NEXN-AS1Q8NBZ9 246 aa14.42□□□□□ -0.1
COL27A1-207ENST00000494090 PCDH15Q96QU1 1955 aa14.42□□□□□ -0.1
COL27A1-207ENST00000494090 ZFAND2AQ8N6M9 145 aa14.42□□□□□ -0.1
COL27A1-207ENST00000494090 TP53TG3Q9ULZ0 132 aa14.42□□□□□ -0.1
COL27A1-207ENST00000494090 TTC28Q96AY4 2481 aa14.41□□□□□ -0.1
COL27A1-207ENST00000494090 SS18L2Q9UHA2 77 aa14.41□□□□□ -0.1
COL27A1-207ENST00000494090 IGKV3D-7A0A0C4DH55 119 aa14.41□□□□□ -0.1
COL27A1-207ENST00000494090 SHISA2Q6UWI4 295 aa14.41□□□□□ -0.1
COL27A1-207ENST00000494090 PLCE1Q9P212 2302 aa14.41□□□□□ -0.1
COL27A1-207ENST00000494090 CEMP1Q6PRD7 247 aaPredicted RBP14.41□□□□□ -0.1
COL27A1-207ENST00000494090 C19orf84I3L1E1 186 aa14.4□□□□□ -0.1
COL27A1-207ENST00000494090 TRAV26-1A0A087WT03 109 aa14.4□□□□□ -0.1
COL27A1-207ENST00000494090 FAM236AA0A1B0GUQ0 79 aa14.4□□□□□ -0.1
COL27A1-207ENST00000494090 FAM236BA0A1B0GV22 79 aa14.4□□□□□ -0.1
COL27A1-207ENST00000494090 REG3AQ06141 175 aa14.4□□□□□ -0.1
COL27A1-207ENST00000494090 SPATA25Q9BR10 227 aa14.4□□□□□ -0.1
COL27A1-207ENST00000494090 ZFAND3Q9H8U3 227 aa14.4□□□□□ -0.1
COL27A1-207ENST00000494090 U3KQK5 164 aa14.4□□□□□ -0.1
COL27A1-207ENST00000494090 A0A0J9YXY3 114 aa14.39□□□□□ -0.11
COL27A1-207ENST00000494090 CRIP1P50238 77 aa14.39□□□□□ -0.11
COL27A1-207ENST00000494090 Q6ZTI0 123 aa14.39□□□□□ -0.11
COL27A1-207ENST00000494090 BDP1A6H8Y1 2624 aa14.39□□□□□ -0.11
COL27A1-207ENST00000494090 NUP210LQ5VU65 1888 aa14.39□□□□□ -0.11
COL27A1-207ENST00000494090 FAM222AQ5U5X8 452 aa14.39□□□□□ -0.11
COL27A1-207ENST00000494090 C20orf173Q96LM9 149 aa14.39□□□□□ -0.11
COL27A1-207ENST00000494090 KIR2DL5BQ8NHK3 375 aa14.39□□□□□ -0.11
COL27A1-207ENST00000494090 ANKHD1Q8IWZ3 2542 aaKnown RBP14.38□□□□□ -0.11
COL27A1-207ENST00000494090 TCL1BO95988 128 aa14.38□□□□□ -0.11
COL27A1-207ENST00000494090 PCNX3Q9H6A9 2034 aa14.38□□□□□ -0.11
COL27A1-207ENST00000494090 WFDC9Q8NEX5 89 aa14.38□□□□□ -0.11
COL27A1-207ENST00000494090 PTH2Q96A98 100 aa14.37□□□□□ -0.11
COL27A1-207ENST00000494090 MIFP14174 115 aa14.37□□□□□ -0.11
COL27A1-207ENST00000494090 RNF183Q96D59 192 aa14.37□□□□□ -0.11
COL27A1-207ENST00000494090 P0DMU3 169 aa14.37□□□□□ -0.11
COL27A1-207ENST00000494090 FAM231AP0DMU4 169 aa14.37□□□□□ -0.11
COL27A1-207ENST00000494090 FAM231CP0DMU5 169 aa14.37□□□□□ -0.11
COL27A1-207ENST00000494090 MED12LQ86YW9 2145 aa14.36□□□□□ -0.11
COL27A1-207ENST00000494090 NOTCH2Q04721 2471 aa14.36□□□□□ -0.11
COL27A1-207ENST00000494090 LINC00269Q8N2A0 174 aa14.35□□□□□ -0.11
COL27A1-207ENST00000494090 WFDC11Q8NEX6 87 aa14.35□□□□□ -0.11
COL27A1-207ENST00000494090 MUC22E2RYF6 1773 aaPredicted RBP14.35□□□□□ -0.11
COL27A1-207ENST00000494090 IGLV2-11P01706 119 aa14.35□□□□□ -0.11
COL27A1-207ENST00000494090 HIST2H2BDQ6DRA6 164 aa14.35□□□□□ -0.11
COL27A1-207ENST00000494090 RNF185Q96GF1 192 aa14.35□□□□□ -0.11
COL27A1-207ENST00000494090 DEFB131BA0A096LNP1 70 aa14.34□□□□□ -0.11
COL27A1-207ENST00000494090 TNCP24821 2201 aa14.34□□□□□ -0.11
COL27A1-207ENST00000494090 C5orf47Q569G3 176 aa14.34□□□□□ -0.11
COL27A1-207ENST00000494090 CHCHD10Q8WYQ3 142 aaPredicted RBP14.33□□□□□ -0.12
COL27A1-207ENST00000494090 CRYGDP07320 174 aa14.33□□□□□ -0.12
COL27A1-207ENST00000494090 TNRC6BQ9UPQ9 1833 aaKnown RBP14.33□□□□□ -0.12
COL27A1-207ENST00000494090 Q6ZSV7 163 aa14.32□□□□□ -0.12
COL27A1-207ENST00000494090 TMEM223A0PJW6 202 aa14.32□□□□□ -0.12
COL27A1-207ENST00000494090 SPANXB1Q9NS25 103 aaPredicted RBP14.32□□□□□ -0.12
COL27A1-207ENST00000494090 C14orf132Q9NPU4 83 aa14.32□□□□□ -0.12
COL27A1-207ENST00000494090 IGKV2-24A0A0C4DH68 120 aa14.32□□□□□ -0.12
COL27A1-207ENST00000494090 C11orf71Q6IPW1 123 aa14.32□□□□□ -0.12
COL27A1-207ENST00000494090 H0Y9J4 135 aa14.31□□□□□ -0.12
COL27A1-207ENST00000494090 TRBV6-4A0A1B0GX49 114 aa14.31□□□□□ -0.12
COL27A1-207ENST00000494090 C10orf142B7Z368 130 aa14.31□□□□□ -0.12
COL27A1-207ENST00000494090 ZNF22P17026 224 aaPredicted RBP14.31□□□□□ -0.12
COL27A1-207ENST00000494090 LINC00467Q9BRT7 94 aa14.31□□□□□ -0.12
COL27A1-207ENST00000494090 IGLV4-3A0A075B6K6 122 aa14.3□□□□□ -0.12
COL27A1-207ENST00000494090 PRO3102Q9H379 93 aa14.3□□□□□ -0.12
COL27A1-207ENST00000494090 INAFM1C9JVW0 142 aa14.3□□□□□ -0.12
COL27A1-207ENST00000494090 SPG11Q96JI7 2443 aa14.3□□□□□ -0.12
COL27A1-207ENST00000494090 LINC00643Q86TS7 51 aa14.3□□□□□ -0.12
COL27A1-207ENST00000494090 IBA57-AS1B1ANH7 110 aa14.29□□□□□ -0.12
COL27A1-207ENST00000494090 TP73-AS1Q9UF72 201 aa14.29□□□□□ -0.12
COL27A1-207ENST00000494090 M0QY20 66 aa14.29□□□□□ -0.12
COL27A1-207ENST00000494090 IGKV2D-26A0A0A0MRZ7 120 aa14.28□□□□□ -0.12
COL27A1-207ENST00000494090 PSMG3-AS1Q96PY0 264 aa14.28□□□□□ -0.12
COL27A1-207ENST00000494090 HIGD2AQ9BW72 106 aa14.28□□□□□ -0.12
COL27A1-207ENST00000494090 CDKN2A-AS1Q9UH64 79 aa14.28□□□□□ -0.12
COL27A1-207ENST00000494090 MAPKAPK5-AS1Q8N8E1 139 aa14.28□□□□□ -0.12
COL27A1-207ENST00000494090 Q8N6K4 173 aa14.27□□□□□ -0.12
COL27A1-207ENST00000494090 CUL9Q8IWT3 2517 aa14.27□□□□□ -0.13
COL27A1-207ENST00000494090 BPY2O14599 106 aa14.26□□□□□ -0.13
COL27A1-207ENST00000494090 TRBV6-8A0A0A6YYG3 113 aa14.26□□□□□ -0.13
COL27A1-207ENST00000494090 ZNF843Q8N446 348 aa14.26□□□□□ -0.13
COL27A1-207ENST00000494090 TRAV10A0A0B4J240 114 aa14.25□□□□□ -0.13
COL27A1-207ENST00000494090 SEC61GP60059 68 aa14.25□□□□□ -0.13
COL27A1-207ENST00000494090 CFAP126Q5VTH2 177 aa14.25□□□□□ -0.13
COL27A1-207ENST00000494090 TRBV6-5A0A0K0K1A5 114 aa14.24□□□□□ -0.13
COL27A1-207ENST00000494090 TRBV27A0A0K0K1C4 114 aa14.24□□□□□ -0.13
COL27A1-207ENST00000494090 NDUFC2O95298 119 aa14.23□□□□□ -0.13
COL27A1-207ENST00000494090 J3KT08 172 aa14.23□□□□□ -0.13
COL27A1-207ENST00000494090 FAM19A1Q7Z5A9 133 aa14.23□□□□□ -0.13
COL27A1-207ENST00000494090 NRACQ8N912 160 aa14.22□□□□□ -0.13
COL27A1-207ENST00000494090 PYGO1Q9Y3Y4 419 aa14.22□□□□□ -0.13
COL27A1-207ENST00000494090 LINC00308Q8TCZ7 52 aa14.22□□□□□ -0.13
COL27A1-207ENST00000494090 OTOGLQ3ZCN5 2332 aa14.21□□□□□ -0.13
COL27A1-207ENST00000494090 A0A087WZ39 114 aa14.21□□□□□ -0.13
COL27A1-207ENST00000494090 TEX49A0A1B0GTD5 131 aa14.21□□□□□ -0.14
COL27A1-207ENST00000494090 CSPG4Q6UVK1 2322 aa14.2□□□□□ -0.14
COL27A1-207ENST00000494090 TRBV30A0A0K0K1B3 111 aa14.2□□□□□ -0.14
COL27A1-207ENST00000494090 SYCNQ0VAF6 134 aa14.2□□□□□ -0.14
COL27A1-207ENST00000494090 FAM110AQ9BQ89 295 aa14.2□□□□□ -0.14
COL27A1-207ENST00000494090 UPK3BQ9BT76 320 aa14.2□□□□□ -0.14
COL27A1-207ENST00000494090 ZNF702PQ9H963 129 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms