RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 ANKHD1Q8IWZ3 2542 aaKnown RBP4.53□□□□□ -1.68
HERC4-209ENST00000473533 DCHS2Q6V1P9 2916 aa4.53□□□□□ -1.68
HERC4-209ENST00000473533 SPRY2O43597 315 aa4.53□□□□□ -1.68
HERC4-209ENST00000473533 ELANEP08246 267 aa4.53□□□□□ -1.68
HERC4-209ENST00000473533 NDUFV3P56181 108 aaKnown RBP4.53□□□□□ -1.68
HERC4-209ENST00000473533 TIRAPP58753 221 aa4.53□□□□□ -1.68
HERC4-209ENST00000473533 DEFB104AQ8WTQ1 72 aa4.53□□□□□ -1.68
HERC4-209ENST00000473533 VSIG2Q96IQ7 327 aa4.53□□□□□ -1.68
HERC4-209ENST00000473533 IMUPQ9GZP8 106 aa4.53□□□□□ -1.68
HERC4-209ENST00000473533 MSMBP08118 114 aa4.53□□□□□ -1.68
HERC4-209ENST00000473533 DEFB121Q5J5C9 76 aa4.53□□□□□ -1.68
HERC4-209ENST00000473533 BRD3OSQ6XYD6 125 aa4.53□□□□□ -1.68
HERC4-209ENST00000473533 C10orf105Q8TEF2 133 aa4.53□□□□□ -1.68
HERC4-209ENST00000473533 OVOL2Q9BRP0 275 aa4.53□□□□□ -1.68
HERC4-209ENST00000473533 LINC00467Q9BRT7 94 aa4.53□□□□□ -1.68
HERC4-209ENST00000473533 PRORYQ9H606 182 aa4.53□□□□□ -1.68
HERC4-209ENST00000473533 B4DSR2 109 aa4.52□□□□□ -1.69
HERC4-209ENST00000473533 LST1O00453 97 aa4.52□□□□□ -1.69
HERC4-209ENST00000473533 TRIAP1O43715 76 aa4.52□□□□□ -1.69
HERC4-209ENST00000473533 TGFAP01135 160 aa4.52□□□□□ -1.69
HERC4-209ENST00000473533 PSMB8P28062 276 aa4.52□□□□□ -1.69
HERC4-209ENST00000473533 J3QLI3 93 aa4.52□□□□□ -1.69
HERC4-209ENST00000473533 HERVK_113P63121 156 aa4.52□□□□□ -1.69
HERC4-209ENST00000473533 FHL3Q13643 280 aa4.52□□□□□ -1.69
HERC4-209ENST00000473533 DGAT2L7PQ6IED9 249 aa4.52□□□□□ -1.69
HERC4-209ENST00000473533 C15orf53Q8NAA6 179 aa4.52□□□□□ -1.69
HERC4-209ENST00000473533 TMEM101Q96IK0 257 aa4.52□□□□□ -1.69
HERC4-209ENST00000473533 CCL19Q99731 98 aa4.52□□□□□ -1.69
HERC4-209ENST00000473533 ACACBO00763 2458 aa4.52□□□□□ -1.69
HERC4-209ENST00000473533 IGHV3OR16-10A0A075B7F0 116 aa4.52□□□□□ -1.69
HERC4-209ENST00000473533 NDUFA1O15239 70 aa4.52□□□□□ -1.69
HERC4-209ENST00000473533 ATP5G1P05496 136 aa4.52□□□□□ -1.69
HERC4-209ENST00000473533 CDSNQ15517 529 aa4.52□□□□□ -1.69
HERC4-209ENST00000473533 USP9XQ93008 2570 aaPredicted RBP4.51□□□□□ -1.69
HERC4-209ENST00000473533 DEFB1P60022 68 aa4.51□□□□□ -1.69
HERC4-209ENST00000473533 SPINK13Q1W4C9 94 aa4.51□□□□□ -1.69
HERC4-209ENST00000473533 TMEM61Q8N0U2 210 aa4.51□□□□□ -1.69
HERC4-209ENST00000473533 BEX4Q9NWD9 120 aaPredicted RBP4.51□□□□□ -1.69
HERC4-209ENST00000473533 HERV-K104P63124 156 aa4.51□□□□□ -1.69
HERC4-209ENST00000473533 CLUHP3Q96NS8 147 aa4.51□□□□□ -1.69
HERC4-209ENST00000473533 DUX3Q96PT4 197 aa4.51□□□□□ -1.69
HERC4-209ENST00000473533 PEMTQ9UBM1 199 aa4.51□□□□□ -1.69
HERC4-209ENST00000473533 IGHV3-64A0A075B6Q5 118 aa4.5□□□□□ -1.69
HERC4-209ENST00000473533 A8MTW9 85 aa4.5□□□□□ -1.69
HERC4-209ENST00000473533 LITAFQ99732 161 aa4.5□□□□□ -1.69
HERC4-209ENST00000473533 PF4P02776 101 aa4.5□□□□□ -1.69
HERC4-209ENST00000473533 INAFM2P0DMQ5 153 aa4.5□□□□□ -1.69
HERC4-209ENST00000473533 IGHV4-38-2P0DP08 117 aa4.5□□□□□ -1.69
HERC4-209ENST00000473533 BLCAPP62952 87 aa4.5□□□□□ -1.69
HERC4-209ENST00000473533 UBE2E2Q96LR5 201 aa4.5□□□□□ -1.69
HERC4-209ENST00000473533 DUX5Q96PT3 197 aa4.5□□□□□ -1.69
HERC4-209ENST00000473533 TMEM126AQ9H061 195 aa4.5□□□□□ -1.69
HERC4-209ENST00000473533 TRAV12-2A0A075B6T6 113 aa4.5□□□□□ -1.69
HERC4-209ENST00000473533 IGLV5-45A0A087WSX0 123 aa4.5□□□□□ -1.69
HERC4-209ENST00000473533 IGHV4-61A0A0C4DH41 118 aa4.5□□□□□ -1.69
HERC4-209ENST00000473533 A0A1W2PPR1 153 aa4.5□□□□□ -1.69
HERC4-209ENST00000473533 H7C423 109 aa4.5□□□□□ -1.69
HERC4-209ENST00000473533 OPRPNQ99935 248 aaPredicted RBP4.5□□□□□ -1.69
HERC4-209ENST00000473533 UBE2D4Q9Y2X8 147 aa4.5□□□□□ -1.69
HERC4-209ENST00000473533 MUC4Q99102 2169 aa4.5□□□□□ -1.69
HERC4-209ENST00000473533 NACAE9PAV3 2078 aa4.5□□□□□ -1.69
HERC4-209ENST00000473533 TRBV7-7A0A0K0K1E9 115 aa4.49□□□□□ -1.69
HERC4-209ENST00000473533 IGKV3-20P01619 116 aa4.49□□□□□ -1.69
HERC4-209ENST00000473533 IGHV3-53P01767 116 aa4.49□□□□□ -1.69
HERC4-209ENST00000473533 TRACP01848 142 aa4.49□□□□□ -1.69
HERC4-209ENST00000473533 ATP5J2P56134 94 aa4.49□□□□□ -1.69
HERC4-209ENST00000473533 TEX49A0A1B0GTD5 131 aa4.49□□□□□ -1.69
HERC4-209ENST00000473533 COX7A2LO14548 114 aa4.49□□□□□ -1.69
HERC4-209ENST00000473533 CRYBG3Q68DQ2 2970 aa4.49□□□□□ -1.69
HERC4-209ENST00000473533 INSP01308 110 aa4.49□□□□□ -1.69
HERC4-209ENST00000473533 FAM19A3Q7Z5A8 133 aa4.49□□□□□ -1.69
HERC4-209ENST00000473533 TRAV4A0A0B4J268 109 aa4.48□□□□□ -1.69
HERC4-209ENST00000473533 CSDC2Q9Y534 153 aaKnown RBP4.48□□□□□ -1.69
HERC4-209ENST00000473533 CHD6Q8TD26 2715 aa4.48□□□□□ -1.69
HERC4-209ENST00000473533 TRBV10-1A0A0K0K1A3 114 aa4.48□□□□□ -1.69
HERC4-209ENST00000473533 B5MCH6 92 aa4.48□□□□□ -1.69
HERC4-209ENST00000473533 SYNJ2BPP57105 145 aa4.48□□□□□ -1.69
HERC4-209ENST00000473533 FAM222AQ5U5X8 452 aa4.48□□□□□ -1.69
HERC4-209ENST00000473533 LINC00643Q86TS7 51 aa4.48□□□□□ -1.69
HERC4-209ENST00000473533 WFDC12Q8WWY7 111 aa4.48□□□□□ -1.69
HERC4-209ENST00000473533 CHCHD7Q9BUK0 85 aa4.48□□□□□ -1.69
HERC4-209ENST00000473533 RS1O15537 224 aa4.48□□□□□ -1.69
HERC4-209ENST00000473533 EIF4EBP3O60516 100 aaPredicted RBP4.48□□□□□ -1.69
HERC4-209ENST00000473533 BEAN1Q3B7T3 259 aa4.48□□□□□ -1.69
HERC4-209ENST00000473533 LINC01356Q8N9X3 169 aa4.48□□□□□ -1.69
HERC4-209ENST00000473533 KMT2BQ9UMN6 2715 aaPredicted RBP4.48□□□□□ -1.69
HERC4-209ENST00000473533 TRAV8-3A0A0A6YYJ7 113 aa4.47□□□□□ -1.69
HERC4-209ENST00000473533 TRAV13-2A0A0B4J235 113 aa4.47□□□□□ -1.69
HERC4-209ENST00000473533 CMC4P56277 68 aaPredicted RBP4.47□□□□□ -1.69
HERC4-209ENST00000473533 RPL36AP83881 106 aaKnown RBP4.47□□□□□ -1.69
HERC4-209ENST00000473533 RPL36ALQ969Q0 106 aaKnown RBP4.47□□□□□ -1.69
HERC4-209ENST00000473533 HOXD3P31249 432 aaPredicted RBP4.47□□□□□ -1.69
HERC4-209ENST00000473533 CXCL5P42830 114 aa4.47□□□□□ -1.69
HERC4-209ENST00000473533 DAZ2Q13117 558 aaKnown RBP4.47□□□□□ -1.69
HERC4-209ENST00000473533 DAZ4Q86SG3 579 aaKnown RBP4.47□□□□□ -1.69
HERC4-209ENST00000473533 DAND5Q8N907 189 aa4.47□□□□□ -1.69
HERC4-209ENST00000473533 LINC01587Q99440 93 aa4.47□□□□□ -1.69
HERC4-209ENST00000473533 DAZ3Q9NR90 486 aaKnown RBP4.47□□□□□ -1.69
HERC4-209ENST00000473533 VPREB3Q9UKI3 123 aa4.47□□□□□ -1.69
HERC4-209ENST00000473533 IGLV5-39A0A0G2JS06 123 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms