RNA–Protein interactions for RNA: ENST00000424143.5

C9orf3-204, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 1,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-204ENST00000424143 TGFAP01135 160 aa11.09□□□□□ -0.63
C9orf3-204ENST00000424143 IGKV3-20P01619 116 aa11.09□□□□□ -0.63
C9orf3-204ENST00000424143 C2orf82Q6UX34 121 aa11.09□□□□□ -0.63
C9orf3-204ENST00000424143 PRRC2AP48634 2157 aaKnown RBP11.08□□□□□ -0.63
C9orf3-204ENST00000424143 IGHV3-64A0A075B6Q5 118 aa11.08□□□□□ -0.64
C9orf3-204ENST00000424143 AVPP01185 164 aa11.08□□□□□ -0.64
C9orf3-204ENST00000424143 RBMY1A1P0DJD3 496 aaKnown RBP11.08□□□□□ -0.64
C9orf3-204ENST00000424143 RBMY1CP0DJD4 496 aa11.08□□□□□ -0.64
C9orf3-204ENST00000424143 SYNJ2BPP57105 145 aa11.08□□□□□ -0.64
C9orf3-204ENST00000424143 RBMY1FQ15415 496 aaKnown RBP11.08□□□□□ -0.64
C9orf3-204ENST00000424143 H7C2G1 150 aa11.07□□□□□ -0.64
C9orf3-204ENST00000424143 RS1O15537 224 aa11.07□□□□□ -0.64
C9orf3-204ENST00000424143 PRSS2P07478 247 aa11.07□□□□□ -0.64
C9orf3-204ENST00000424143 HOXD3P31249 432 aaPredicted RBP11.07□□□□□ -0.64
C9orf3-204ENST00000424143 TRAV8-3A0A0A6YYJ7 113 aa11.06□□□□□ -0.64
C9orf3-204ENST00000424143 IGLV5-39A0A0G2JS06 123 aa11.06□□□□□ -0.64
C9orf3-204ENST00000424143 IGHV4-59P01825 116 aa11.06□□□□□ -0.64
C9orf3-204ENST00000424143 NHLRC4P0CG21 123 aaPredicted RBP11.06□□□□□ -0.64
C9orf3-204ENST00000424143 NDUFV3P56181 108 aaKnown RBP11.06□□□□□ -0.64
C9orf3-204ENST00000424143 CIRBPQ14011 172 aaKnown RBP11.06□□□□□ -0.64
C9orf3-204ENST00000424143 DEFB112Q30KQ8 113 aa11.06□□□□□ -0.64
C9orf3-204ENST00000424143 TMEM95Q3KNT9 176 aa11.06□□□□□ -0.64
C9orf3-204ENST00000424143 LINC01356Q8N9X3 169 aa11.06□□□□□ -0.64
C9orf3-204ENST00000424143 ACYP1P07311 99 aa11.06□□□□□ -0.64
C9orf3-204ENST00000424143 GNLYP22749 145 aa11.06□□□□□ -0.64
C9orf3-204ENST00000424143 NBASA2RRP1 2371 aa11.05□□□□□ -0.64
C9orf3-204ENST00000424143 CSDC2Q9Y534 153 aaKnown RBP11.05□□□□□ -0.64
C9orf3-204ENST00000424143 TEX49A0A1B0GTD5 131 aa11.04□□□□□ -0.64
C9orf3-204ENST00000424143 HERVK_113P63121 156 aa11.04□□□□□ -0.64
C9orf3-204ENST00000424143 TTC32Q5I0X7 151 aa11.04□□□□□ -0.64
C9orf3-204ENST00000424143 DUX3Q96PT4 197 aa11.04□□□□□ -0.64
C9orf3-204ENST00000424143 VPREB3Q9UKI3 123 aa11.04□□□□□ -0.64
C9orf3-204ENST00000424143 DOPEY2Q9Y3R5 2298 aa11.04□□□□□ -0.64
C9orf3-204ENST00000424143 TRAV4A0A0B4J268 109 aa11.03□□□□□ -0.64
C9orf3-204ENST00000424143 FSHBP01225 129 aa11.03□□□□□ -0.64
C9orf3-204ENST00000424143 LY6DQ14210 128 aa11.03□□□□□ -0.64
C9orf3-204ENST00000424143 C15orf53Q8NAA6 179 aa11.03□□□□□ -0.64
C9orf3-204ENST00000424143 C11orf72Q8NBR9 251 aa11.03□□□□□ -0.64
C9orf3-204ENST00000424143 DCHS1Q96JQ0 3298 aa11.03□□□□□ -0.64
C9orf3-204ENST00000424143 NACAE9PAV3 2078 aa11.03□□□□□ -0.64
C9orf3-204ENST00000424143 ADARB2-AS1A8MUL3 147 aa11.02□□□□□ -0.64
C9orf3-204ENST00000424143 DEFB131AP59861 70 aa11.02□□□□□ -0.64
C9orf3-204ENST00000424143 DUX5Q96PT3 197 aa11.02□□□□□ -0.64
C9orf3-204ENST00000424143 ZNF702PQ9H963 129 aa11.02□□□□□ -0.64
C9orf3-204ENST00000424143 SPTAN1Q13813 2472 aaKnown RBP11.02□□□□□ -0.65
C9orf3-204ENST00000424143 TRBV7-7A0A0K0K1E9 115 aa11.02□□□□□ -0.65
C9orf3-204ENST00000424143 RBMY1BA6NDE4 496 aaKnown RBP11.02□□□□□ -0.65
C9orf3-204ENST00000424143 RBMY1EA6NEQ0 496 aaKnown RBP11.02□□□□□ -0.65
C9orf3-204ENST00000424143 RBMY1DP0C7P1 496 aaKnown RBP11.02□□□□□ -0.65
C9orf3-204ENST00000424143 PROK1P58294 105 aa11.02□□□□□ -0.65
C9orf3-204ENST00000424143 C10orf99Q6UWK7 81 aa11.02□□□□□ -0.65
C9orf3-204ENST00000424143 Q6ZSN1 163 aa11.02□□□□□ -0.65
C9orf3-204ENST00000424143 Q8N2B8 174 aa11.02□□□□□ -0.65
C9orf3-204ENST00000424143 TMEM101Q96IK0 257 aa11.02□□□□□ -0.65
C9orf3-204ENST00000424143 IMUPQ9GZP8 106 aa11.02□□□□□ -0.65
C9orf3-204ENST00000424143 BEX4Q9NWD9 120 aaPredicted RBP11.02□□□□□ -0.65
C9orf3-204ENST00000424143 PEMTQ9UBM1 199 aa11.02□□□□□ -0.65
C9orf3-204ENST00000424143 GAGE12JA6NER3 117 aa11.01□□□□□ -0.65
C9orf3-204ENST00000424143 KNCNA6PVL3 124 aa11.01□□□□□ -0.65
C9orf3-204ENST00000424143 GAGE7O76087 117 aa11.01□□□□□ -0.65
C9orf3-204ENST00000424143 GAGE12FP0CL80 117 aa11.01□□□□□ -0.65
C9orf3-204ENST00000424143 GAGE12GP0CL81 117 aa11.01□□□□□ -0.65
C9orf3-204ENST00000424143 GAGE12IP0CL82 117 aa11.01□□□□□ -0.65
C9orf3-204ENST00000424143 GAGE4Q13068 117 aa11.01□□□□□ -0.65
C9orf3-204ENST00000424143 Q6YL49 198 aa11.01□□□□□ -0.65
C9orf3-204ENST00000424143 A0A096LNT2 108 aa11□□□□□ -0.65
C9orf3-204ENST00000424143 CRLF1O75462 422 aa11□□□□□ -0.65
C9orf3-204ENST00000424143 CEMP1Q6PRD7 247 aaPredicted RBP11□□□□□ -0.65
C9orf3-204ENST00000424143 SHISA2Q6UWI4 295 aa11□□□□□ -0.65
C9orf3-204ENST00000424143 CDKN2A-AS1Q9UH64 79 aa11□□□□□ -0.65
C9orf3-204ENST00000424143 TRBV10-1A0A0K0K1A3 114 aa10.99□□□□□ -0.65
C9orf3-204ENST00000424143 COX7A2LO14548 114 aa10.99□□□□□ -0.65
C9orf3-204ENST00000424143 LINC00308Q8TCZ7 52 aa10.99□□□□□ -0.65
C9orf3-204ENST00000424143 CITED2Q99967 270 aaPredicted RBP10.99□□□□□ -0.65
C9orf3-204ENST00000424143 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.98□□□□□ -0.653e-7■■□□□ 11.6
C9orf3-204ENST00000424143 IGHV3-73A0A0B4J1V6 119 aa10.98□□□□□ -0.65
C9orf3-204ENST00000424143 INSP01308 110 aa10.98□□□□□ -0.65
C9orf3-204ENST00000424143 TRACP01848 142 aa10.98□□□□□ -0.65
C9orf3-204ENST00000424143 HERV-K104P63124 156 aa10.98□□□□□ -0.65
C9orf3-204ENST00000424143 ATRXP46100 2492 aa10.98□□□□□ -0.65
C9orf3-204ENST00000424143 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.98□□□□□ -0.65
C9orf3-204ENST00000424143 IGKV2-29A2NJV5 120 aaPredicted RBP10.98□□□□□ -0.65
C9orf3-204ENST00000424143 IL17DQ8TAD2 202 aa10.98□□□□□ -0.65
C9orf3-204ENST00000424143 CSMD1Q96PZ7 3565 aa10.97□□□□□ -0.65
C9orf3-204ENST00000424143 IGHV3OR16-12A0A075B7B8 117 aa10.97□□□□□ -0.65
C9orf3-204ENST00000424143 TRAV25A0A0B4J276 109 aa10.97□□□□□ -0.65
C9orf3-204ENST00000424143 DGAT2L7PQ6IED9 249 aa10.97□□□□□ -0.65
C9orf3-204ENST00000424143 MAP6D1Q9H9H5 199 aa10.97□□□□□ -0.65
C9orf3-204ENST00000424143 IGF2RP11717 2491 aa10.97□□□□□ -0.65
C9orf3-204ENST00000424143 PF4P02776 101 aa10.96□□□□□ -0.65
C9orf3-204ENST00000424143 LINC00242Q5T6M2 205 aa10.96□□□□□ -0.65
C9orf3-204ENST00000424143 FAM222AQ5U5X8 452 aa10.96□□□□□ -0.65
C9orf3-204ENST00000424143 CLEC2BQ92478 149 aa10.96□□□□□ -0.65
C9orf3-204ENST00000424143 LINC01587Q99440 93 aa10.96□□□□□ -0.65
C9orf3-204ENST00000424143 DAZ2Q13117 558 aaKnown RBP10.95□□□□□ -0.66
C9orf3-204ENST00000424143 RNASE13Q5GAN3 156 aaKnown RBP10.95□□□□□ -0.66
C9orf3-204ENST00000424143 DAZ4Q86SG3 579 aaKnown RBP10.95□□□□□ -0.66
C9orf3-204ENST00000424143 C4orf3Q8WVX3 66 aa10.95□□□□□ -0.66
C9orf3-204ENST00000424143 ZNF625Q96I27 306 aaPredicted RBP10.95□□□□□ -0.66
C9orf3-204ENST00000424143 DAZ3Q9NR90 486 aaKnown RBP10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 286.9 ms