RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 SDHAF1A6NFY7 115 aa13.1□□□□□ -0.31
CCDC88C-203ENST00000389856 M0QY20 66 aa13.1□□□□□ -0.31
CCDC88C-203ENST00000389856 OR4C5Q8NGB2 326 aa13.1□□□□□ -0.31
CCDC88C-203ENST00000389856 TRAV4A0A0B4J268 109 aa13.08□□□□□ -0.32
CCDC88C-203ENST00000389856 A8MZ25 164 aa13.08□□□□□ -0.32
CCDC88C-203ENST00000389856 NOP10Q9NPE3 64 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-203ENST00000389856 STAB1Q9NY15 2570 aa13.08□□□□□ -0.32
CCDC88C-203ENST00000389856 PRSS29PA6NIE9 313 aa13.07□□□□□ -0.32
CCDC88C-203ENST00000389856 IGIPA6NJ69 53 aa13.07□□□□□ -0.32
CCDC88C-203ENST00000389856 CCL25O15444 150 aa13.07□□□□□ -0.32
CCDC88C-203ENST00000389856 KRTAP21-3Q3LHN1 58 aa13.07□□□□□ -0.32
CCDC88C-203ENST00000389856 UFSP1Q6NVU6 142 aa13.07□□□□□ -0.32
CCDC88C-203ENST00000389856 CHAC1Q9BUX1 264 aa13.07□□□□□ -0.32
CCDC88C-203ENST00000389856 TRBV25-1A0A075B6N4 114 aa13.06□□□□□ -0.32
CCDC88C-203ENST00000389856 PMVKQ15126 192 aa13.06□□□□□ -0.32
CCDC88C-203ENST00000389856 OR11H2Q8NH07 326 aa13.06□□□□□ -0.32
CCDC88C-203ENST00000389856 DNAJC30Q96LL9 226 aa13.06□□□□□ -0.32
CCDC88C-203ENST00000389856 TP53TG1Q9Y2A0 90 aa13.06□□□□□ -0.32
CCDC88C-203ENST00000389856 C9orf118A6NHY6 69 aa13.06□□□□□ -0.32
CCDC88C-203ENST00000389856 Q6ZVH6 145 aa13.06□□□□□ -0.32
CCDC88C-203ENST00000389856 FBN1P35555 2871 aaKnown RBP13.06□□□□□ -0.32
CCDC88C-203ENST00000389856 TRGV2A0A075B6R0 118 aa13.05□□□□□ -0.32
CCDC88C-203ENST00000389856 E9PLD3 99 aa13.05□□□□□ -0.32
CCDC88C-203ENST00000389856 IGHV3-53P01767 116 aa13.05□□□□□ -0.32
CCDC88C-203ENST00000389856 KRTAP10-11P60412 298 aa13.05□□□□□ -0.32
CCDC88C-203ENST00000389856 DEFB135Q30KP9 77 aa13.05□□□□□ -0.32
CCDC88C-203ENST00000389856 Q6ZTI0 123 aa13.05□□□□□ -0.32
CCDC88C-203ENST00000389856 TM2D2Q9BX73 214 aa13.05□□□□□ -0.32
CCDC88C-203ENST00000389856 PLAC8L1A1L4L8 177 aa13.04□□□□□ -0.32
CCDC88C-203ENST00000389856 MIFP14174 115 aa13.04□□□□□ -0.32
CCDC88C-203ENST00000389856 HERVK_113P61574 105 aa13.04□□□□□ -0.32
CCDC88C-203ENST00000389856 TNFRSF18Q9Y5U5 241 aa13.04□□□□□ -0.32
CCDC88C-203ENST00000389856 COL6A5A8TX70 2615 aa13.04□□□□□ -0.32
CCDC88C-203ENST00000389856 IGHV3-73A0A0B4J1V6 119 aa13.03□□□□□ -0.32
CCDC88C-203ENST00000389856 I3L3M4 83 aa13.03□□□□□ -0.32
CCDC88C-203ENST00000389856 TCTAP57738 103 aa13.03□□□□□ -0.32
CCDC88C-203ENST00000389856 SAMD5Q5TGI4 173 aa13.03□□□□□ -0.32
CCDC88C-203ENST00000389856 X6R8D5 127 aa13.03□□□□□ -0.32
CCDC88C-203ENST00000389856 RNF183Q96D59 192 aa13.02□□□□□ -0.32
CCDC88C-203ENST00000389856 MYMXA0A1B0GTQ4 84 aa13.02□□□□□ -0.33
CCDC88C-203ENST00000389856 LYRM9A8MSI8 78 aa13.02□□□□□ -0.33
CCDC88C-203ENST00000389856 SMIM13P0DJ93 91 aa13.02□□□□□ -0.33
CCDC88C-203ENST00000389856 NEGR1Q7Z3B1 354 aa13.02□□□□□ -0.33
CCDC88C-203ENST00000389856 CST9LQ9H4G1 147 aa13.02□□□□□ -0.33
CCDC88C-203ENST00000389856 TRAV8-6A0A0B4J262 113 aa13.01□□□□□ -0.33
CCDC88C-203ENST00000389856 TRBV10-1A0A0K0K1A3 114 aa13.01□□□□□ -0.33
CCDC88C-203ENST00000389856 GAGE12BA1L429 117 aa13.01□□□□□ -0.33
CCDC88C-203ENST00000389856 GAGE7O76087 117 aa13.01□□□□□ -0.33
CCDC88C-203ENST00000389856 GAGE12FP0CL80 117 aa13.01□□□□□ -0.33
CCDC88C-203ENST00000389856 GAGE12GP0CL81 117 aa13.01□□□□□ -0.33
CCDC88C-203ENST00000389856 GAGE12IP0CL82 117 aa13.01□□□□□ -0.33
CCDC88C-203ENST00000389856 EMP1P54849 157 aa13.01□□□□□ -0.33
CCDC88C-203ENST00000389856 GTF2H5Q6ZYL4 71 aa13.01□□□□□ -0.33
CCDC88C-203ENST00000389856 CEND1Q8N111 149 aa13.01□□□□□ -0.33
CCDC88C-203ENST00000389856 G3V4G9 280 aa13□□□□□ -0.33
CCDC88C-203ENST00000389856 K7EP13 123 aa13□□□□□ -0.33
CCDC88C-203ENST00000389856 TSHBP01222 138 aa13□□□□□ -0.33
CCDC88C-203ENST00000389856 AMMECR1LQ6DCA0 310 aa13□□□□□ -0.33
CCDC88C-203ENST00000389856 GCSHP23434 173 aa12.99□□□□□ -0.33
CCDC88C-203ENST00000389856 CRYBA4P53673 196 aa12.99□□□□□ -0.33
CCDC88C-203ENST00000389856 C20orf203Q8NBC4 194 aa12.99□□□□□ -0.33
CCDC88C-203ENST00000389856 TEX48A0A1B0GUV7 120 aa12.99□□□□□ -0.33
CCDC88C-203ENST00000389856 C11orf86A6NJI1 115 aa12.99□□□□□ -0.33
CCDC88C-203ENST00000389856 MAPKAPK5-AS1Q8N8E1 139 aa12.99□□□□□ -0.33
CCDC88C-203ENST00000389856 ZNF479Q96JC4 524 aa12.99□□□□□ -0.33
CCDC88C-203ENST00000389856 NACAE9PAV3 2078 aa12.98□□□□□ -0.33
CCDC88C-203ENST00000389856 IGLV4-69A0A075B6H9 119 aa12.98□□□□□ -0.33
CCDC88C-203ENST00000389856 K7EQD1 137 aa12.98□□□□□ -0.33
CCDC88C-203ENST00000389856 LINC00612Q8N6U2 182 aa12.98□□□□□ -0.33
CCDC88C-203ENST00000389856 PRADC1Q9BSG0 188 aa12.98□□□□□ -0.33
CCDC88C-203ENST00000389856 TRGV4A0A0C4DH28 118 aa12.97□□□□□ -0.33
CCDC88C-203ENST00000389856 RPL36AP83881 106 aaKnown RBP12.97□□□□□ -0.33
CCDC88C-203ENST00000389856 NFE4Q86UQ8 179 aa12.97□□□□□ -0.33
CCDC88C-203ENST00000389856 RPL36ALQ969Q0 106 aaKnown RBP12.97□□□□□ -0.33
CCDC88C-203ENST00000389856 TTTY13Q9BZ97 58 aa12.97□□□□□ -0.33
CCDC88C-203ENST00000389856 PYGO1Q9Y3Y4 419 aa12.97□□□□□ -0.33
CCDC88C-203ENST00000389856 DNHD1Q96M86 4753 aa12.96□□□□□ -0.33
CCDC88C-203ENST00000389856 GAGE10A6NGK3 116 aa12.96□□□□□ -0.33
CCDC88C-203ENST00000389856 RPL39P62891 51 aaKnown RBP12.96□□□□□ -0.33
CCDC88C-203ENST00000389856 MDFIQ99750 246 aa12.96□□□□□ -0.33
CCDC88C-203ENST00000389856 IGHV4-28A0A0C4DH34 117 aa12.95□□□□□ -0.34
CCDC88C-203ENST00000389856 TRBV6-4A0A1B0GX49 114 aa12.95□□□□□ -0.34
CCDC88C-203ENST00000389856 FXYD2P54710 66 aa12.95□□□□□ -0.34
CCDC88C-203ENST00000389856 DEFB130BP0DP73 79 aa12.95□□□□□ -0.34
CCDC88C-203ENST00000389856 DEFB130AP0DP74 79 aa12.95□□□□□ -0.34
CCDC88C-203ENST00000389856 Q6ZSN1 163 aa12.95□□□□□ -0.34
CCDC88C-203ENST00000389856 HIST1H4GQ99525 98 aa12.95□□□□□ -0.34
CCDC88C-203ENST00000389856 TRBV7-3A0A075B6L6 115 aa12.94□□□□□ -0.34
CCDC88C-203ENST00000389856 P0DMU3 169 aa12.94□□□□□ -0.34
CCDC88C-203ENST00000389856 FAM231AP0DMU4 169 aa12.94□□□□□ -0.34
CCDC88C-203ENST00000389856 FAM231CP0DMU5 169 aa12.94□□□□□ -0.34
CCDC88C-203ENST00000389856 OR5A1Q8NGJ0 315 aa12.94□□□□□ -0.34
CCDC88C-203ENST00000389856 A0A1W2PPM0 123 aa12.93□□□□□ -0.34
CCDC88C-203ENST00000389856 H3BUT2 72 aa12.93□□□□□ -0.34
CCDC88C-203ENST00000389856 K7EP34 96 aa12.93□□□□□ -0.34
CCDC88C-203ENST00000389856 SPART-AS1P0CW21 52 aa12.93□□□□□ -0.34
CCDC88C-203ENST00000389856 FAM222AQ5U5X8 452 aa12.93□□□□□ -0.34
CCDC88C-203ENST00000389856 Q8NAQ8 132 aa12.93□□□□□ -0.34
CCDC88C-203ENST00000389856 ZNF815PA8K554 130 aa12.92□□□□□ -0.34
CCDC88C-203ENST00000389856 FABP2P12104 132 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms