RNA–Protein interactions for RNA: ENST00000375274.6

PTCH1-203, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 4,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-203ENST00000375274 MT-ATP8P03928 68 aa8.69□□□□□ -1.02
PTCH1-203ENST00000375274 CITED1Q99966 193 aa8.69□□□□□ -1.02
PTCH1-203ENST00000375274 TRBV10-1A0A0K0K1A3 114 aa8.69□□□□□ -1.02
PTCH1-203ENST00000375274 A0A1B0GX51 115 aa8.69□□□□□ -1.02
PTCH1-203ENST00000375274 COX7A2LO14548 114 aa8.69□□□□□ -1.02
PTCH1-203ENST00000375274 ZNF22P17026 224 aaPredicted RBP8.69□□□□□ -1.02
PTCH1-203ENST00000375274 URB1-AS1Q96HZ7 61 aa8.69□□□□□ -1.02
PTCH1-203ENST00000375274 TNRC6BQ9UPQ9 1833 aaKnown RBP8.69□□□□□ -1.02
PTCH1-203ENST00000375274 NFE4Q86UQ8 179 aa8.69□□□□□ -1.02
PTCH1-203ENST00000375274 K7EQG2 157 aa8.68□□□□□ -1.02
PTCH1-203ENST00000375274 DEFB113Q30KQ7 82 aa8.68□□□□□ -1.02
PTCH1-203ENST00000375274 Q71RC1 249 aaPredicted RBP8.68□□□□□ -1.02
PTCH1-203ENST00000375274 ODF3Q96PU9 254 aa8.68□□□□□ -1.02
PTCH1-203ENST00000375274 TNFRSF13BO14836 293 aaPredicted RBP8.68□□□□□ -1.02
PTCH1-203ENST00000375274 NRACQ8N912 160 aa8.68□□□□□ -1.02
PTCH1-203ENST00000375274 C11orf21Q9P2W6 132 aa8.68□□□□□ -1.02
PTCH1-203ENST00000375274 C3orf56Q8N813 242 aa8.67□□□□□ -1.02
PTCH1-203ENST00000375274 CDKN2A-AS1Q9UH64 79 aa8.67□□□□□ -1.02
PTCH1-203ENST00000375274 IGLV4-3A0A075B6K6 122 aa8.67□□□□□ -1.02
PTCH1-203ENST00000375274 GAS8-AS1O95177 125 aa8.67□□□□□ -1.02
PTCH1-203ENST00000375274 J3QKU1 62 aa8.67□□□□□ -1.02
PTCH1-203ENST00000375274 TEX49A0A1B0GTD5 131 aa8.66□□□□□ -1.02
PTCH1-203ENST00000375274 RNF183Q96D59 192 aa8.66□□□□□ -1.02
PTCH1-203ENST00000375274 JMJD1CQ15652 2540 aa8.66□□□□□ -1.02
PTCH1-203ENST00000375274 M0QY20 66 aa8.66□□□□□ -1.02
PTCH1-203ENST00000375274 HHLA3Q9XRX5 114 aa8.66□□□□□ -1.02
PTCH1-203ENST00000375274 PTPRSQ13332 1948 aa8.65□□□□□ -1.02
PTCH1-203ENST00000375274 TRBV27A0A0K0K1C4 114 aa8.65□□□□□ -1.02
PTCH1-203ENST00000375274 JMJD7-PLA2G4BH0Y9G9 81 aa8.65□□□□□ -1.02
PTCH1-203ENST00000375274 MRPL23Q16540 153 aaKnown RBP8.65□□□□□ -1.02
PTCH1-203ENST00000375274 LINC00643Q86TS7 51 aa8.65□□□□□ -1.02
PTCH1-203ENST00000375274 TMEM263Q8WUH6 116 aaKnown RBP8.65□□□□□ -1.02
PTCH1-203ENST00000375274 TMEM223A0PJW6 202 aa8.65□□□□□ -1.02
PTCH1-203ENST00000375274 IGHV3-33P01772 117 aa8.65□□□□□ -1.02
PTCH1-203ENST00000375274 RBM3P98179 157 aaKnown RBP8.65□□□□□ -1.02
PTCH1-203ENST00000375274 MAP6D1Q9H9H5 199 aa8.65□□□□□ -1.02
PTCH1-203ENST00000375274 Q9HAA7 133 aa8.65□□□□□ -1.02
PTCH1-203ENST00000375274 ESM1Q9NQ30 184 aa8.65□□□□□ -1.02
PTCH1-203ENST00000375274 ZFYVE26Q68DK2 2539 aa8.65□□□□□ -1.02
PTCH1-203ENST00000375274 CDK2AP2O75956 126 aa8.65□□□□□ -1.02
PTCH1-203ENST00000375274 CNFNQ9BYD5 112 aa8.65□□□□□ -1.02
PTCH1-203ENST00000375274 ATP5G1P05496 136 aa8.65□□□□□ -1.03
PTCH1-203ENST00000375274 PKD1L2Q7Z442 2459 aa8.64□□□□□ -1.03
PTCH1-203ENST00000375274 LRP4O75096 1905 aa8.64□□□□□ -1.03
PTCH1-203ENST00000375274 Q8N6K4 173 aa8.64□□□□□ -1.03
PTCH1-203ENST00000375274 IGHV4-4A0A075B6R2 117 aa8.64□□□□□ -1.03
PTCH1-203ENST00000375274 IGKV2D-24A0A075B6R9 120 aa8.64□□□□□ -1.03
PTCH1-203ENST00000375274 HIST2H2BDQ6DRA6 164 aa8.64□□□□□ -1.03
PTCH1-203ENST00000375274 CAMK2N2Q96S95 79 aa8.64□□□□□ -1.03
PTCH1-203ENST00000375274 RNASE3P12724 160 aaKnown RBP8.63□□□□□ -1.03
PTCH1-203ENST00000375274 LINC00467Q9BRT7 94 aa8.63□□□□□ -1.03
PTCH1-203ENST00000375274 CEP350Q5VT06 3117 aa8.63□□□□□ -1.03
PTCH1-203ENST00000375274 NDUFV3P56181 108 aaKnown RBP8.63□□□□□ -1.03
PTCH1-203ENST00000375274 PRR9Q5T870 116 aa8.63□□□□□ -1.03
PTCH1-203ENST00000375274 C4orf3Q8WVX3 66 aa8.63□□□□□ -1.03
PTCH1-203ENST00000375274 C1orf43Q9BWL3 253 aa8.63□□□□□ -1.03
PTCH1-203ENST00000375274 FN1P02751 2386 aaKnown RBP8.63□□□□□ -1.03
PTCH1-203ENST00000375274 TRBV6-5A0A0K0K1A5 114 aa8.63□□□□□ -1.03
PTCH1-203ENST00000375274 TRIAP1O43715 76 aa8.62□□□□□ -1.03
PTCH1-203ENST00000375274 Q6ZTI0 123 aa8.62□□□□□ -1.03
PTCH1-203ENST00000375274 PRRC2CQ9Y520 2896 aaKnown RBP8.62□□□□□ -1.03
PTCH1-203ENST00000375274 hADV29S1A0JD25 119 aa8.62□□□□□ -1.03
PTCH1-203ENST00000375274 SPART-AS1P0CW21 52 aa8.62□□□□□ -1.03
PTCH1-203ENST00000375274 C11orf71Q6IPW1 123 aa8.62□□□□□ -1.03
PTCH1-203ENST00000375274 DNAH12Q6ZR08 3092 aa8.61□□□□□ -1.03
PTCH1-203ENST00000375274 CXCL5P42830 114 aa8.61□□□□□ -1.03
PTCH1-203ENST00000375274 POLR2KP53803 58 aaKnown RBP8.61□□□□□ -1.03
PTCH1-203ENST00000375274 DEFB105AQ8NG35 78 aa8.61□□□□□ -1.03
PTCH1-203ENST00000375274 TRBV30A0A0K0K1B3 111 aa8.61□□□□□ -1.03
PTCH1-203ENST00000375274 IGHV3-30P01768 117 aa8.61□□□□□ -1.03
PTCH1-203ENST00000375274 IGHV3-30-5P0DP03 117 aa8.61□□□□□ -1.03
PTCH1-203ENST00000375274 PSMB8P28062 276 aa8.61□□□□□ -1.03
PTCH1-203ENST00000375274 C14orf132Q9NPU4 83 aa8.61□□□□□ -1.03
PTCH1-203ENST00000375274 C19orf84I3L1E1 186 aa8.61□□□□□ -1.03
PTCH1-203ENST00000375274 MRPS12O15235 138 aaKnown RBP8.61□□□□□ -1.03
PTCH1-203ENST00000375274 CFAP126Q5VTH2 177 aa8.61□□□□□ -1.03
PTCH1-203ENST00000375274 ZMAT4Q9H898 229 aa8.61□□□□□ -1.03
PTCH1-203ENST00000375274 SPAG11BQ08648 103 aa8.6□□□□□ -1.03
PTCH1-203ENST00000375274 RMI2Q96E14 147 aa8.6□□□□□ -1.03
PTCH1-203ENST00000375274 CITED2Q99967 270 aaPredicted RBP8.6□□□□□ -1.03
PTCH1-203ENST00000375274 C9orf66Q5T8R8 295 aa8.6□□□□□ -1.03
PTCH1-203ENST00000375274 LINC00308Q8TCZ7 52 aa8.6□□□□□ -1.03
PTCH1-203ENST00000375274 PRO0255Q9UI72 69 aa8.6□□□□□ -1.03
PTCH1-203ENST00000375274 PRB1P04280 392 aa8.6□□□□□ -1.03
PTCH1-203ENST00000375274 CPAMD8Q8IZJ3 1885 aa8.6□□□□□ -1.03
PTCH1-203ENST00000375274 FUSP35637 526 aaKnown RBP eCLIP8.59□□□□□ -1.03
PTCH1-203ENST00000375274 TMEM256-PLSCR3K7ERE1 68 aa8.59□□□□□ -1.03
PTCH1-203ENST00000375274 PYGO1Q9Y3Y4 419 aa8.59□□□□□ -1.03
PTCH1-203ENST00000375274 KLLNB2CW77 178 aa8.59□□□□□ -1.03
PTCH1-203ENST00000375274 J3KT08 172 aa8.59□□□□□ -1.03
PTCH1-203ENST00000375274 NCR3O14931 201 aa8.59□□□□□ -1.03
PTCH1-203ENST00000375274 PROK1P58294 105 aa8.59□□□□□ -1.03
PTCH1-203ENST00000375274 NDUFA1O15239 70 aa8.58□□□□□ -1.04
PTCH1-203ENST00000375274 INSL3P51460 131 aa8.58□□□□□ -1.04
PTCH1-203ENST00000375274 UFSP1Q6NVU6 142 aa8.58□□□□□ -1.04
PTCH1-203ENST00000375274 Q6ZS46 218 aa8.58□□□□□ -1.04
PTCH1-203ENST00000375274 CLPSL1A2RUU4 121 aa8.58□□□□□ -1.04
PTCH1-203ENST00000375274 TMEM258P61165 79 aa8.58□□□□□ -1.04
PTCH1-203ENST00000375274 C10orf99Q6UWK7 81 aa8.58□□□□□ -1.04
PTCH1-203ENST00000375274 KLK12Q9UKR0 248 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 129.1 ms