RNA–Protein interactions for RNA: ENST00000368020.5

USF1-202, Transcript of upstream transcription factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USF1, Length 1,717 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-202ENST00000368020 IL17DQ8TAD2 202 aa10.18□□□□□ -0.78
USF1-202ENST00000368020 TMEM263Q8WUH6 116 aaKnown RBP10.18□□□□□ -0.78
USF1-202ENST00000368020 XCL2Q9UBD3 114 aa10.18□□□□□ -0.78
USF1-202ENST00000368020 CCL25O15444 150 aa10.17□□□□□ -0.78
USF1-202ENST00000368020 Q6ZVH6 145 aa10.17□□□□□ -0.78
USF1-202ENST00000368020 CITED1Q99966 193 aa10.17□□□□□ -0.78
USF1-202ENST00000368020 ADARB2-AS1A8MUL3 147 aa10.16□□□□□ -0.78
USF1-202ENST00000368020 CIDEAO60543 219 aa10.16□□□□□ -0.78
USF1-202ENST00000368020 P0DMU3 169 aa10.16□□□□□ -0.78
USF1-202ENST00000368020 FAM231AP0DMU4 169 aa10.16□□□□□ -0.78
USF1-202ENST00000368020 FAM231CP0DMU5 169 aa10.16□□□□□ -0.78
USF1-202ENST00000368020 HIST1H4GQ99525 98 aa10.16□□□□□ -0.78
USF1-202ENST00000368020 TTTY13Q9BZ97 58 aa10.16□□□□□ -0.78
USF1-202ENST00000368020 VCX2Q9H322 139 aa10.16□□□□□ -0.78
USF1-202ENST00000368020 SPANXA1Q9NS26 97 aa10.16□□□□□ -0.78
USF1-202ENST00000368020 STAB1Q9NY15 2570 aa10.16□□□□□ -0.78
USF1-202ENST00000368020 C1orf158Q8N1D5 194 aa10.16□□□□□ -0.78
USF1-202ENST00000368020 MAPKAPK5-AS1Q8N8E1 139 aa10.16□□□□□ -0.78
USF1-202ENST00000368020 FBN1P35555 2871 aaKnown RBP10.15□□□□□ -0.78
USF1-202ENST00000368020 ZNF815PA8K554 130 aa10.15□□□□□ -0.78
USF1-202ENST00000368020 RNASE8Q8TDE3 154 aaKnown RBP10.15□□□□□ -0.78
USF1-202ENST00000368020 MRPL16Q9NX20 251 aaKnown RBP10.15□□□□□ -0.78
USF1-202ENST00000368020 IGHV3-73A0A0B4J1V6 119 aa10.14□□□□□ -0.79
USF1-202ENST00000368020 TRBV10-1A0A0K0K1A3 114 aa10.14□□□□□ -0.79
USF1-202ENST00000368020 TMEM238LA0A1B0GVL6 79 aa10.14□□□□□ -0.79
USF1-202ENST00000368020 A6NJY4 79 aa10.14□□□□□ -0.79
USF1-202ENST00000368020 TMEM170BQ5T4T1 132 aa10.14□□□□□ -0.79
USF1-202ENST00000368020 AMMECR1LQ6DCA0 310 aa10.14□□□□□ -0.79
USF1-202ENST00000368020 C16orf74Q96GX8 76 aa10.14□□□□□ -0.79
USF1-202ENST00000368020 IGLV4-3A0A075B6K6 122 aa10.13□□□□□ -0.79
USF1-202ENST00000368020 AZU1P20160 251 aa10.13□□□□□ -0.79
USF1-202ENST00000368020 FXYD2P54710 66 aa10.13□□□□□ -0.79
USF1-202ENST00000368020 COTL1Q14019 142 aa10.13□□□□□ -0.79
USF1-202ENST00000368020 SCGB1D4Q6XE38 83 aa10.13□□□□□ -0.79
USF1-202ENST00000368020 GAGE10A6NGK3 116 aa10.13□□□□□ -0.79
USF1-202ENST00000368020 SMAGPQ0VAQ4 97 aa10.13□□□□□ -0.79
USF1-202ENST00000368020 DAZ2Q13117 558 aaKnown RBP10.13□□□□□ -0.79
USF1-202ENST00000368020 HIST2H2BDQ6DRA6 164 aa10.13□□□□□ -0.79
USF1-202ENST00000368020 TRBV7-3A0A075B6L6 115 aa10.12□□□□□ -0.79
USF1-202ENST00000368020 TRAV4A0A0B4J268 109 aa10.12□□□□□ -0.79
USF1-202ENST00000368020 AMELXQ99217 191 aa10.12□□□□□ -0.79
USF1-202ENST00000368020 IGHV3OR16-12A0A075B7B8 117 aa10.11□□□□□ -0.79
USF1-202ENST00000368020 TRGV1A0A0A0MS02 117 aa10.11□□□□□ -0.79
USF1-202ENST00000368020 H3BUT2 72 aa10.11□□□□□ -0.79
USF1-202ENST00000368020 PF4P02776 101 aa10.11□□□□□ -0.79
USF1-202ENST00000368020 FABP2P12104 132 aa10.11□□□□□ -0.79
USF1-202ENST00000368020 OR5A1Q8NGJ0 315 aa10.11□□□□□ -0.79
USF1-202ENST00000368020 ZNRF2Q8NHG8 242 aa10.11□□□□□ -0.79
USF1-202ENST00000368020 A0A1W2PPM0 123 aa10.1□□□□□ -0.79
USF1-202ENST00000368020 LEPROTO15243 131 aa10.1□□□□□ -0.79
USF1-202ENST00000368020 LGALS3P17931 250 aaKnown RBP10.1□□□□□ -0.79
USF1-202ENST00000368020 INSL3P51460 131 aa10.1□□□□□ -0.79
USF1-202ENST00000368020 SHISA2Q6UWI4 295 aa10.1□□□□□ -0.79
USF1-202ENST00000368020 C3orf56Q8N813 242 aa10.1□□□□□ -0.79
USF1-202ENST00000368020 PLEKHB2Q96CS7 222 aa10.1□□□□□ -0.79
USF1-202ENST00000368020 TIMM21Q9BVV7 248 aa10.1□□□□□ -0.79
USF1-202ENST00000368020 NHP2Q9NX24 153 aaKnown RBP10.1□□□□□ -0.79
USF1-202ENST00000368020 TMEM223A0PJW6 202 aa10.1□□□□□ -0.79
USF1-202ENST00000368020 K7EP13 123 aa10.1□□□□□ -0.79
USF1-202ENST00000368020 PRM2P04554 102 aa10.1□□□□□ -0.79
USF1-202ENST00000368020 MRPS36P82909 103 aaKnown RBP10.1□□□□□ -0.79
USF1-202ENST00000368020 RPL36AP83881 106 aaKnown RBP10.1□□□□□ -0.79
USF1-202ENST00000368020 SAMD5Q5TGI4 173 aa10.1□□□□□ -0.79
USF1-202ENST00000368020 DEFB104AQ8WTQ1 72 aa10.1□□□□□ -0.79
USF1-202ENST00000368020 RPL36ALQ969Q0 106 aaKnown RBP10.1□□□□□ -0.79
USF1-202ENST00000368020 SPANXB1Q9NS25 103 aaPredicted RBP10.1□□□□□ -0.79
USF1-202ENST00000368020 C19orf73Q9NVV2 129 aa10.1□□□□□ -0.79
USF1-202ENST00000368020 A0A1B0GWB2 263 aa10.09□□□□□ -0.79
USF1-202ENST00000368020 J3QQQ9 107 aa10.09□□□□□ -0.79
USF1-202ENST00000368020 K7EP34 96 aa10.09□□□□□ -0.79
USF1-202ENST00000368020 K7EQD1 137 aa10.09□□□□□ -0.79
USF1-202ENST00000368020 Q6ZSN1 163 aa10.09□□□□□ -0.79
USF1-202ENST00000368020 DAZ4Q86SG3 579 aaKnown RBP10.09□□□□□ -0.79
USF1-202ENST00000368020 RAB37Q96AX2 223 aa10.09□□□□□ -0.79
USF1-202ENST00000368020 CHCHD7Q9BUK0 85 aa10.09□□□□□ -0.79
USF1-202ENST00000368020 DAZ3Q9NR90 486 aaKnown RBP10.09□□□□□ -0.79
USF1-202ENST00000368020 NOTCH3Q9UM47 2321 aa10.09□□□□□ -0.79
USF1-202ENST00000368020 EMP1P54849 157 aa10.08□□□□□ -0.8
USF1-202ENST00000368020 SRSF9Q13242 221 aaKnown RBP eCLIP10.08□□□□□ -0.8
USF1-202ENST00000368020 UBE2D4Q9Y2X8 147 aa10.08□□□□□ -0.8
USF1-202ENST00000368020 ZNF22P17026 224 aaPredicted RBP10.07□□□□□ -0.8
USF1-202ENST00000368020 PHLDA1Q8WV24 401 aaPredicted RBP10.07□□□□□ -0.8
USF1-202ENST00000368020 TINCRA0A1B0GVN0 87 aa10.07□□□□□ -0.8
USF1-202ENST00000368020 RRN3P1Q2M238 152 aa10.07□□□□□ -0.8
USF1-202ENST00000368020 C12orf74Q32Q52 190 aa10.07□□□□□ -0.8
USF1-202ENST00000368020 LINC00482Q8N8I6 264 aa10.07□□□□□ -0.8
USF1-202ENST00000368020 OPRPNQ99935 248 aaPredicted RBP10.07□□□□□ -0.8
USF1-202ENST00000368020 OVOL2Q9BRP0 275 aa10.07□□□□□ -0.8
USF1-202ENST00000368020 A0A0J9YY99 117 aa10.06□□□□□ -0.8
USF1-202ENST00000368020 GIG44P09565 113 aaPredicted RBP10.06□□□□□ -0.8
USF1-202ENST00000368020 SPCS1Q9Y6A9 102 aa10.06□□□□□ -0.8
USF1-202ENST00000368020 A0A0J9YXV3 536 aa10.05□□□□□ -0.8
USF1-202ENST00000368020 Q6ZTI0 123 aa10.05□□□□□ -0.8
USF1-202ENST00000368020 SLC25A29Q8N8R3 303 aa10.05□□□□□ -0.8
USF1-202ENST00000368020 CSNK1G2-AS1Q8NCQ2 148 aa10.05□□□□□ -0.8
USF1-202ENST00000368020 CSDC2Q9Y534 153 aaKnown RBP10.05□□□□□ -0.8
USF1-202ENST00000368020 GAGE12BA1L429 117 aa10.04□□□□□ -0.8
USF1-202ENST00000368020 RPL35AP18077 110 aaKnown RBP10.04□□□□□ -0.8
USF1-202ENST00000368020 DGAT2L7PQ6IED9 249 aa10.04□□□□□ -0.8
USF1-202ENST00000368020 ZNF479Q96JC4 524 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms