RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 TMEM223A0PJW6 202 aa15.83■□□□□ 0.12
SHMT1-202ENST00000352886 PTH2Q96A98 100 aa15.83■□□□□ 0.12
SHMT1-202ENST00000352886 AMELXQ99217 191 aa15.83■□□□□ 0.12
SHMT1-202ENST00000352886 LINC00467Q9BRT7 94 aa15.83■□□□□ 0.12
SHMT1-202ENST00000352886 GTSF1LQ9H1H1 148 aa15.83■□□□□ 0.12
SHMT1-202ENST00000352886 XCL2Q9UBD3 114 aa15.83■□□□□ 0.12
SHMT1-202ENST00000352886 A0A0J9YXV3 536 aa15.83■□□□□ 0.12
SHMT1-202ENST00000352886 ZNF22P17026 224 aaPredicted RBP15.83■□□□□ 0.12
SHMT1-202ENST00000352886 CCL24O00175 119 aa15.82■□□□□ 0.12
SHMT1-202ENST00000352886 RHODO00212 210 aa15.82■□□□□ 0.12
SHMT1-202ENST00000352886 UBE2D1P51668 147 aa15.82■□□□□ 0.12
SHMT1-202ENST00000352886 FHL3Q13643 280 aa15.82■□□□□ 0.12
SHMT1-202ENST00000352886 PGPEP1Q9NXJ5 209 aa15.82■□□□□ 0.12
SHMT1-202ENST00000352886 PYGO1Q9Y3Y4 419 aa15.82■□□□□ 0.12
SHMT1-202ENST00000352886 CEMP1Q6PRD7 247 aaPredicted RBP15.81■□□□□ 0.12
SHMT1-202ENST00000352886 IGHV3-64A0A075B6Q5 118 aa15.8■□□□□ 0.12
SHMT1-202ENST00000352886 H3BMG7 143 aa15.8■□□□□ 0.12
SHMT1-202ENST00000352886 SMAGPQ0VAQ4 97 aa15.8■□□□□ 0.12
SHMT1-202ENST00000352886 SLC25A29Q8N8R3 303 aa15.8■□□□□ 0.12
SHMT1-202ENST00000352886 FAM104AQ969W3 186 aa15.8■□□□□ 0.12
SHMT1-202ENST00000352886 SIGMAR1Q99720 223 aa15.8■□□□□ 0.12
SHMT1-202ENST00000352886 SPXQ9BT56 116 aa15.8■□□□□ 0.12
SHMT1-202ENST00000352886 SPANXB1Q9NS25 103 aaPredicted RBP15.8■□□□□ 0.12
SHMT1-202ENST00000352886 LEPROTO15243 131 aa15.8■□□□□ 0.12
SHMT1-202ENST00000352886 STHQ8IWL8 128 aa15.8■□□□□ 0.12
SHMT1-202ENST00000352886 TRAV25A0A0B4J276 109 aa15.79■□□□□ 0.12
SHMT1-202ENST00000352886 TENM4Q6N022 2769 aa15.79■□□□□ 0.12
SHMT1-202ENST00000352886 BEAN1Q3B7T3 259 aa15.78■□□□□ 0.12
SHMT1-202ENST00000352886 IGHV3OR16-12A0A075B7B8 117 aa15.78■□□□□ 0.12
SHMT1-202ENST00000352886 APOMO95445 188 aa15.78■□□□□ 0.12
SHMT1-202ENST00000352886 IGHV3-53P01767 116 aa15.78■□□□□ 0.12
SHMT1-202ENST00000352886 IGHV3-30P01768 117 aa15.78■□□□□ 0.12
SHMT1-202ENST00000352886 IGHV3-30-5P0DP03 117 aa15.78■□□□□ 0.12
SHMT1-202ENST00000352886 RNASE13Q5GAN3 156 aaKnown RBP15.77■□□□□ 0.12
SHMT1-202ENST00000352886 CITED2Q99967 270 aaPredicted RBP15.77■□□□□ 0.12
SHMT1-202ENST00000352886 CHCHD7Q9BUK0 85 aa15.77■□□□□ 0.12
SHMT1-202ENST00000352886 IGHV3-38A0A0C4DH36 116 aa15.76■□□□□ 0.11
SHMT1-202ENST00000352886 A0A1B0GV72 72 aa15.76■□□□□ 0.11
SHMT1-202ENST00000352886 F8W1H4 67 aa15.76■□□□□ 0.11
SHMT1-202ENST00000352886 RS1O15537 224 aa15.76■□□□□ 0.11
SHMT1-202ENST00000352886 C1orf158Q8N1D5 194 aa15.75■□□□□ 0.11
SHMT1-202ENST00000352886 TSSC4Q9Y5U2 329 aaPredicted RBP15.75■□□□□ 0.11
SHMT1-202ENST00000352886 WFDC2Q14508 124 aa15.75■□□□□ 0.11
SHMT1-202ENST00000352886 IGKV2D-29A0A075B6S2 120 aaPredicted RBP15.74■□□□□ 0.11
SHMT1-202ENST00000352886 IGKV2-29A2NJV5 120 aaPredicted RBP15.74■□□□□ 0.11
SHMT1-202ENST00000352886 TSPAN13O95857 204 aa15.74■□□□□ 0.11
SHMT1-202ENST00000352886 CRYBA4P53673 196 aa15.74■□□□□ 0.11
SHMT1-202ENST00000352886 MRPS36P82909 103 aaKnown RBP15.74■□□□□ 0.11
SHMT1-202ENST00000352886 KRTAP1-1Q07627 177 aa15.74■□□□□ 0.11
SHMT1-202ENST00000352886 NDUFA11Q86Y39 141 aa15.74■□□□□ 0.11
SHMT1-202ENST00000352886 DNAJC30Q96LL9 226 aa15.74■□□□□ 0.11
SHMT1-202ENST00000352886 UBE2D4Q9Y2X8 147 aa15.74■□□□□ 0.11
SHMT1-202ENST00000352886 GAGE12HA6NDE8 117 aa15.73■□□□□ 0.11
SHMT1-202ENST00000352886 SFTA2Q6UW10 78 aa15.73■□□□□ 0.11
SHMT1-202ENST00000352886 MTURNQ8N3F0 131 aa15.73■□□□□ 0.11
SHMT1-202ENST00000352886 LINC01006Q8NI28 216 aa15.73■□□□□ 0.11
SHMT1-202ENST00000352886 YAE1D1Q9NRH1 226 aa15.73■□□□□ 0.11
SHMT1-202ENST00000352886 SPANXA1Q9NS26 97 aa15.73■□□□□ 0.11
SHMT1-202ENST00000352886 CFC1BP0CG36 223 aa15.72■□□□□ 0.11
SHMT1-202ENST00000352886 CFC1P0CG37 223 aa15.72■□□□□ 0.11
SHMT1-202ENST00000352886 PDZD2O15018 2839 aa15.71■□□□□ 0.11
SHMT1-202ENST00000352886 ACANP16112 2415 aa15.71■□□□□ 0.11
SHMT1-202ENST00000352886 SETD2Q9BYW2 2564 aaPredicted RBP15.71■□□□□ 0.11
SHMT1-202ENST00000352886 IGHV3-30-3P0DP02 117 aa15.71■□□□□ 0.11
SHMT1-202ENST00000352886 GAGE13Q4V321 117 aa15.71■□□□□ 0.11
SHMT1-202ENST00000352886 TIMM21Q9BVV7 248 aa15.71■□□□□ 0.11
SHMT1-202ENST00000352886 TRGV1A0A0A0MS02 117 aa15.7■□□□□ 0.1
SHMT1-202ENST00000352886 LOC107984156A0A0G2JMH3 177 aa15.7■□□□□ 0.1
SHMT1-202ENST00000352886 ARL17AQ8IVW1 177 aa15.7■□□□□ 0.1
SHMT1-202ENST00000352886 C10orf126Q8N4M7 172 aa15.7■□□□□ 0.1
SHMT1-202ENST00000352886 IL17DQ8TAD2 202 aa15.7■□□□□ 0.1
SHMT1-202ENST00000352886 Q6ZUT4 128 aa15.69■□□□□ 0.1
SHMT1-202ENST00000352886 TRAV8-3A0A0A6YYJ7 113 aa15.68■□□□□ 0.1
SHMT1-202ENST00000352886 RNASE1P07998 156 aaKnown RBP15.68■□□□□ 0.1
SHMT1-202ENST00000352886 PRO0461Q9UI25 63 aa15.68■□□□□ 0.1
SHMT1-202ENST00000352886 SPATA25Q9BR10 227 aa15.67■□□□□ 0.1
SHMT1-202ENST00000352886 ANK3Q12955 4377 aaKnown RBP15.67■□□□□ 0.1
SHMT1-202ENST00000352886 TINCRA0A1B0GVN0 87 aa15.67■□□□□ 0.1
SHMT1-202ENST00000352886 ADARB2-AS1A8MUL3 147 aa15.67■□□□□ 0.1
SHMT1-202ENST00000352886 C16orf95Q9H693 158 aa15.67■□□□□ 0.1
SHMT1-202ENST00000352886 A0A0J9YXY3 114 aa15.66■□□□□ 0.1
SHMT1-202ENST00000352886 UBE2D3P61077 147 aa15.66■□□□□ 0.1
SHMT1-202ENST00000352886 UBE2D2P62837 147 aa15.66■□□□□ 0.1
SHMT1-202ENST00000352886 ETDBQ3ZM63 59 aa15.66■□□□□ 0.1
SHMT1-202ENST00000352886 SH2D6Q7Z4S9 175 aa15.66■□□□□ 0.1
SHMT1-202ENST00000352886 IGHV1-58A0A0C4DH39 117 aa15.66■□□□□ 0.1
SHMT1-202ENST00000352886 A4D1N5 150 aa15.66■□□□□ 0.1
SHMT1-202ENST00000352886 Q6ZTI0 123 aa15.65■□□□□ 0.1
SHMT1-202ENST00000352886 PRO1854Q9UHT4 67 aa15.65■□□□□ 0.1
SHMT1-202ENST00000352886 NOTCH3Q9UM47 2321 aa15.65■□□□□ 0.1
SHMT1-202ENST00000352886 PSMB2P49721 201 aa15.65■□□□□ 0.1
SHMT1-202ENST00000352886 CKS1BP61024 79 aa15.65■□□□□ 0.1
SHMT1-202ENST00000352886 TMEM263Q8WUH6 116 aaKnown RBP15.65■□□□□ 0.1
SHMT1-202ENST00000352886 MTORP42345 2549 aa15.65■□□□□ 0.1
SHMT1-202ENST00000352886 NIPBLQ6KC79 2804 aaeCLIP15.64■□□□□ 0.09
SHMT1-202ENST00000352886 J3QR89 54 aa15.64■□□□□ 0.09
SHMT1-202ENST00000352886 MUSTN1Q8IVN3 82 aa15.64■□□□□ 0.09
SHMT1-202ENST00000352886 WFDC10AQ9H1F0 79 aa15.64■□□□□ 0.09
SHMT1-202ENST00000352886 SPINK8P0C7L1 97 aa15.63■□□□□ 0.09
SHMT1-202ENST00000352886 SETXQ7Z333 2677 aaKnown RBP15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms