RNA–Protein interactions for RNA: ENST00000337526.10

RTN4-202, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,790 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-202ENST00000337526 C9orf66Q5T8R8 295 aa10.38□□□□□ -0.75
RTN4-202ENST00000337526 ZFAND3Q9H8U3 227 aa10.38□□□□□ -0.75
RTN4-202ENST00000337526 IGLV2-11P01706 119 aa10.38□□□□□ -0.75
RTN4-202ENST00000337526 A0A0J9YXY3 114 aa10.37□□□□□ -0.75
RTN4-202ENST00000337526 RBM3P98179 157 aaKnown RBP10.37□□□□□ -0.75
RTN4-202ENST00000337526 SMIM20Q8N5G0 67 aa10.37□□□□□ -0.75
RTN4-202ENST00000337526 CHD8Q9HCK8 2581 aa10.37□□□□□ -0.75
RTN4-202ENST00000337526 A0A1B0GX51 115 aa10.37□□□□□ -0.75
RTN4-202ENST00000337526 SMAD5-AS1Q9Y6J3 95 aa10.37□□□□□ -0.75
RTN4-202ENST00000337526 TMEM263Q8WUH6 116 aaKnown RBP10.37□□□□□ -0.75
RTN4-202ENST00000337526 SPTBN4Q9H254 2564 aa10.36□□□□□ -0.75
RTN4-202ENST00000337526 C10orf142B7Z368 130 aa10.36□□□□□ -0.75
RTN4-202ENST00000337526 K7EQG2 157 aa10.36□□□□□ -0.75
RTN4-202ENST00000337526 ZFAND2AQ8N6M9 145 aa10.36□□□□□ -0.75
RTN4-202ENST00000337526 MAPKAPK5-AS1Q8N8E1 139 aa10.36□□□□□ -0.75
RTN4-202ENST00000337526 SPANXCQ9NY87 97 aa10.36□□□□□ -0.75
RTN4-202ENST00000337526 MIAQ16674 131 aa10.36□□□□□ -0.75
RTN4-202ENST00000337526 C20orf173Q96LM9 149 aa10.36□□□□□ -0.75
RTN4-202ENST00000337526 MAP6D1Q9H9H5 199 aa10.36□□□□□ -0.75
RTN4-202ENST00000337526 ATOX1O00244 68 aa10.35□□□□□ -0.75
RTN4-202ENST00000337526 IGHV3-30P01768 117 aa10.35□□□□□ -0.75
RTN4-202ENST00000337526 IGHV3-33P01772 117 aa10.35□□□□□ -0.75
RTN4-202ENST00000337526 IGHV3-30-5P0DP03 117 aa10.35□□□□□ -0.75
RTN4-202ENST00000337526 NFE4Q86UQ8 179 aa10.35□□□□□ -0.75
RTN4-202ENST00000337526 C4orf3Q8WVX3 66 aa10.35□□□□□ -0.75
RTN4-202ENST00000337526 RNF185Q96GF1 192 aa10.35□□□□□ -0.75
RTN4-202ENST00000337526 CITED2Q99967 270 aaPredicted RBP10.35□□□□□ -0.75
RTN4-202ENST00000337526 NUP210LQ5VU65 1888 aa10.35□□□□□ -0.75
RTN4-202ENST00000337526 JMJD7-PLA2G4BH0Y9G9 81 aa10.35□□□□□ -0.75
RTN4-202ENST00000337526 ODF3Q96PU9 254 aa10.34□□□□□ -0.75
RTN4-202ENST00000337526 U3KQK5 164 aa10.34□□□□□ -0.75
RTN4-202ENST00000337526 CDKN2A-AS1Q9UH64 79 aa10.34□□□□□ -0.75
RTN4-202ENST00000337526 ETDCA0A1B0GVM5 59 aa10.34□□□□□ -0.75
RTN4-202ENST00000337526 FUSP35637 526 aaKnown RBP eCLIP10.34□□□□□ -0.751e-8■□□□□ 8.2
RTN4-202ENST00000337526 ANKRD11Q6UB99 2663 aaPredicted RBP10.33□□□□□ -0.76
RTN4-202ENST00000337526 DEFB4AO15263 64 aa10.33□□□□□ -0.76
RTN4-202ENST00000337526 UBE2BP63146 152 aa10.33□□□□□ -0.76
RTN4-202ENST00000337526 DEFB135Q30KP9 77 aa10.33□□□□□ -0.76
RTN4-202ENST00000337526 Q6ZTI0 123 aa10.33□□□□□ -0.76
RTN4-202ENST00000337526 ZNF22P17026 224 aaPredicted RBP10.33□□□□□ -0.76
RTN4-202ENST00000337526 SPAG11BQ08648 103 aa10.33□□□□□ -0.76
RTN4-202ENST00000337526 PRO0255Q9UI72 69 aa10.33□□□□□ -0.76
RTN4-202ENST00000337526 TRAV26-1A0A087WT03 109 aa10.32□□□□□ -0.76
RTN4-202ENST00000337526 TNRC6BQ9UPQ9 1833 aaKnown RBP10.32□□□□□ -0.76
RTN4-202ENST00000337526 C19orf84I3L1E1 186 aa10.32□□□□□ -0.76
RTN4-202ENST00000337526 CXCL5P42830 114 aa10.32□□□□□ -0.76
RTN4-202ENST00000337526 KLK12Q9UKR0 248 aa10.32□□□□□ -0.76
RTN4-202ENST00000337526 FN1P02751 2386 aaKnown RBP10.32□□□□□ -0.76
RTN4-202ENST00000337526 NDUFA1O15239 70 aa10.32□□□□□ -0.76
RTN4-202ENST00000337526 IGLV4-3A0A075B6K6 122 aa10.31□□□□□ -0.76
RTN4-202ENST00000337526 RPL18AQ02543 176 aaKnown RBP10.31□□□□□ -0.76
RTN4-202ENST00000337526 SPANXB1Q9NS25 103 aaPredicted RBP10.31□□□□□ -0.76
RTN4-202ENST00000337526 MRAPQ8TCY5 172 aa10.31□□□□□ -0.76
RTN4-202ENST00000337526 PKD1L2Q7Z442 2459 aa10.31□□□□□ -0.76
RTN4-202ENST00000337526 M0QY20 66 aa10.3□□□□□ -0.76
RTN4-202ENST00000337526 LINC00310P59036 64 aa10.3□□□□□ -0.76
RTN4-202ENST00000337526 HIST2H2BDQ6DRA6 164 aa10.3□□□□□ -0.76
RTN4-202ENST00000337526 NCR3O14931 201 aa10.3□□□□□ -0.76
RTN4-202ENST00000337526 LINC00467Q9BRT7 94 aa10.3□□□□□ -0.76
RTN4-202ENST00000337526 C2orf91Q6ZV80 131 aa10.3□□□□□ -0.76
RTN4-202ENST00000337526 IGHV4-28A0A0C4DH34 117 aa10.3□□□□□ -0.76
RTN4-202ENST00000337526 TEX49A0A1B0GTD5 131 aa10.29□□□□□ -0.76
RTN4-202ENST00000337526 PSMB8P28062 276 aa10.29□□□□□ -0.76
RTN4-202ENST00000337526 NREPQ16612 68 aa10.29□□□□□ -0.76
RTN4-202ENST00000337526 LINC00643Q86TS7 51 aa10.29□□□□□ -0.76
RTN4-202ENST00000337526 C11orf21Q9P2W6 132 aa10.29□□□□□ -0.76
RTN4-202ENST00000337526 ZMAT4Q9H898 229 aa10.29□□□□□ -0.76
RTN4-202ENST00000337526 MUC22E2RYF6 1773 aaPredicted RBP10.28□□□□□ -0.76
RTN4-202ENST00000337526 TMEM223A0PJW6 202 aa10.28□□□□□ -0.76
RTN4-202ENST00000337526 MT-ATP8P03928 68 aa10.28□□□□□ -0.76
RTN4-202ENST00000337526 TRBV27A0A0K0K1C4 114 aa10.28□□□□□ -0.76
RTN4-202ENST00000337526 TMEM256-PLSCR3K7ERE1 68 aa10.28□□□□□ -0.76
RTN4-202ENST00000337526 TMEM258P61165 79 aa10.28□□□□□ -0.76
RTN4-202ENST00000337526 RBX1P62877 108 aa10.28□□□□□ -0.76
RTN4-202ENST00000337526 NRACQ8N912 160 aa10.28□□□□□ -0.76
RTN4-202ENST00000337526 CLPSL1A2RUU4 121 aa10.27□□□□□ -0.76
RTN4-202ENST00000337526 C14orf132Q9NPU4 83 aa10.27□□□□□ -0.76
RTN4-202ENST00000337526 CCL18P55774 89 aa10.27□□□□□ -0.77
RTN4-202ENST00000337526 DEFB114Q30KQ6 69 aa10.27□□□□□ -0.77
RTN4-202ENST00000337526 C11orf71Q6IPW1 123 aa10.27□□□□□ -0.77
RTN4-202ENST00000337526 Q8N6K4 173 aa10.27□□□□□ -0.77
RTN4-202ENST00000337526 GAS8-AS1O95177 125 aa10.26□□□□□ -0.77
RTN4-202ENST00000337526 DIRC1Q969H9 104 aa10.26□□□□□ -0.77
RTN4-202ENST00000337526 DNAJC9-AS1A6NH13 148 aa10.26□□□□□ -0.77
RTN4-202ENST00000337526 H3BQ85 93 aa10.26□□□□□ -0.77
RTN4-202ENST00000337526 RNASE3P12724 160 aaKnown RBP10.26□□□□□ -0.77
RTN4-202ENST00000337526 C10orf99Q6UWK7 81 aa10.26□□□□□ -0.77
RTN4-202ENST00000337526 RNF183Q96D59 192 aa10.25□□□□□ -0.77
RTN4-202ENST00000337526 TRBV6-5A0A0K0K1A5 114 aa10.25□□□□□ -0.77
RTN4-202ENST00000337526 Q6YL49 198 aa10.25□□□□□ -0.77
RTN4-202ENST00000337526 PRRC2AP48634 2157 aaKnown RBP10.24□□□□□ -0.77
RTN4-202ENST00000337526 PROK1P58294 105 aa10.24□□□□□ -0.77
RTN4-202ENST00000337526 PRR9Q5T870 116 aa10.24□□□□□ -0.77
RTN4-202ENST00000337526 LINC00308Q8TCZ7 52 aa10.24□□□□□ -0.77
RTN4-202ENST00000337526 TRIAP1O43715 76 aa10.24□□□□□ -0.77
RTN4-202ENST00000337526 ATG2AQ2TAZ0 1938 aa10.24□□□□□ -0.77
RTN4-202ENST00000337526 CEP192Q8TEP8 1941 aa10.24□□□□□ -0.77
RTN4-202ENST00000337526 CFAP126Q5VTH2 177 aa10.23□□□□□ -0.77
RTN4-202ENST00000337526 INSL3P51460 131 aa10.23□□□□□ -0.77
RTN4-202ENST00000337526 LINC00269Q8N2A0 174 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms