RNA–Protein interactions for RNA: ENST00000317677.9

CPNE1-201, Transcript of copine 1, humanhuman

TSL 1 (best) BASIC

Gene CPNE1, Length 1,961 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-201ENST00000317677 DUX3Q96PT4 197 aa9.72□□□□□ -0.85
CPNE1-201ENST00000317677 C10orf126Q8N4M7 172 aa9.71□□□□□ -0.86
CPNE1-201ENST00000317677 CITED2Q99967 270 aaPredicted RBP9.71□□□□□ -0.86
CPNE1-201ENST00000317677 H3BVH4 76 aa9.7□□□□□ -0.86
CPNE1-201ENST00000317677 DUSP14O95147 198 aaKnown RBP9.7□□□□□ -0.86
CPNE1-201ENST00000317677 SRSF9Q13242 221 aaKnown RBP eCLIP9.7□□□□□ -0.86
CPNE1-201ENST00000317677 Q8N1Y9 231 aa9.7□□□□□ -0.86
CPNE1-201ENST00000317677 C15orf53Q8NAA6 179 aa9.7□□□□□ -0.86
CPNE1-201ENST00000317677 STAB1Q9NY15 2570 aa9.7□□□□□ -0.86
CPNE1-201ENST00000317677 RNASE1P07998 156 aaKnown RBP9.7□□□□□ -0.86
CPNE1-201ENST00000317677 C4orf3Q8WVX3 66 aa9.7□□□□□ -0.86
CPNE1-201ENST00000317677 IGKV3D-20A0A0C4DH25 116 aa9.69□□□□□ -0.86
CPNE1-201ENST00000317677 ZFAND2AQ8N6M9 145 aa9.69□□□□□ -0.86
CPNE1-201ENST00000317677 FAM19A4Q96LR4 140 aa9.69□□□□□ -0.86
CPNE1-201ENST00000317677 TRAV8-4A0A0B4J246 113 aa9.68□□□□□ -0.86
CPNE1-201ENST00000317677 M0R2P5 195 aa9.68□□□□□ -0.86
CPNE1-201ENST00000317677 OVOL1O14753 267 aa9.68□□□□□ -0.86
CPNE1-201ENST00000317677 CFC1BP0CG36 223 aa9.68□□□□□ -0.86
CPNE1-201ENST00000317677 CFC1P0CG37 223 aa9.68□□□□□ -0.86
CPNE1-201ENST00000317677 P0DMU3 169 aa9.68□□□□□ -0.86
CPNE1-201ENST00000317677 FAM231AP0DMU4 169 aa9.68□□□□□ -0.86
CPNE1-201ENST00000317677 FAM231CP0DMU5 169 aa9.68□□□□□ -0.86
CPNE1-201ENST00000317677 PRO1854Q9UHT4 67 aa9.68□□□□□ -0.86
CPNE1-201ENST00000317677 TRBV7-7A0A0K0K1E9 115 aa9.68□□□□□ -0.86
CPNE1-201ENST00000317677 FAM240AA0A1B0GVK7 77 aa9.68□□□□□ -0.86
CPNE1-201ENST00000317677 A0A1B0GX51 115 aa9.68□□□□□ -0.86
CPNE1-201ENST00000317677 GAS8-AS1O95177 125 aa9.68□□□□□ -0.86
CPNE1-201ENST00000317677 KLHL30-AS1Q8NEE0 82 aa9.68□□□□□ -0.86
CPNE1-201ENST00000317677 PRADC1Q9BSG0 188 aa9.68□□□□□ -0.86
CPNE1-201ENST00000317677 FBN1P35555 2871 aaKnown RBP9.68□□□□□ -0.86
CPNE1-201ENST00000317677 TRAV25A0A0B4J276 109 aa9.67□□□□□ -0.86
CPNE1-201ENST00000317677 ZNF815PA8K554 130 aa9.67□□□□□ -0.86
CPNE1-201ENST00000317677 K7EQG2 157 aa9.67□□□□□ -0.86
CPNE1-201ENST00000317677 ORM1P02763 201 aa9.67□□□□□ -0.86
CPNE1-201ENST00000317677 CD28P10747 220 aa9.67□□□□□ -0.86
CPNE1-201ENST00000317677 KHDC1LQ5JSQ8 128 aa9.67□□□□□ -0.86
CPNE1-201ENST00000317677 C11orf44Q8N8P7 122 aa9.67□□□□□ -0.86
CPNE1-201ENST00000317677 NEXN-AS1Q8NBZ9 246 aa9.67□□□□□ -0.86
CPNE1-201ENST00000317677 LINC01006Q8NI28 216 aa9.67□□□□□ -0.86
CPNE1-201ENST00000317677 LINC00477Q96M19 166 aa9.67□□□□□ -0.86
CPNE1-201ENST00000317677 SMIM9A6NGZ8 99 aa9.66□□□□□ -0.86
CPNE1-201ENST00000317677 C9JAW5 83 aa9.66□□□□□ -0.86
CPNE1-201ENST00000317677 HILS1P60008 231 aa9.66□□□□□ -0.86
CPNE1-201ENST00000317677 RPS28P62857 69 aaKnown RBP9.66□□□□□ -0.86
CPNE1-201ENST00000317677 SCGB1D4Q6XE38 83 aa9.66□□□□□ -0.86
CPNE1-201ENST00000317677 IMUPQ9GZP8 106 aa9.66□□□□□ -0.86
CPNE1-201ENST00000317677 C16orf95Q9H693 158 aa9.66□□□□□ -0.86
CPNE1-201ENST00000317677 LENEPQ9Y5L5 61 aa9.66□□□□□ -0.86
CPNE1-201ENST00000317677 TRAV2A0A0B4J234 112 aa9.66□□□□□ -0.86
CPNE1-201ENST00000317677 SFTA2Q6UW10 78 aa9.66□□□□□ -0.86
CPNE1-201ENST00000317677 NRACQ8N912 160 aa9.66□□□□□ -0.86
CPNE1-201ENST00000317677 BAALCQ8WXS3 180 aa9.66□□□□□ -0.86
CPNE1-201ENST00000317677 MSRB1Q9NZV6 116 aa9.66□□□□□ -0.86
CPNE1-201ENST00000317677 A0A0J9YY99 117 aa9.65□□□□□ -0.86
CPNE1-201ENST00000317677 APRG1Q8IVJ8 170 aa9.65□□□□□ -0.86
CPNE1-201ENST00000317677 NTN5Q8WTR8 489 aaPredicted RBP9.65□□□□□ -0.86
CPNE1-201ENST00000317677 IGHV3-30P01768 117 aa9.64□□□□□ -0.87
CPNE1-201ENST00000317677 IGHV3-30-5P0DP03 117 aa9.64□□□□□ -0.87
CPNE1-201ENST00000317677 PLEKHB2Q96CS7 222 aa9.64□□□□□ -0.87
CPNE1-201ENST00000317677 DNHD1Q96M86 4753 aa9.64□□□□□ -0.87
CPNE1-201ENST00000317677 GATA1P15976 413 aaPredicted RBP9.64□□□□□ -0.87
CPNE1-201ENST00000317677 KRTAP24-1Q3LI83 254 aa9.64□□□□□ -0.87
CPNE1-201ENST00000317677 DEFB121Q5J5C9 76 aa9.64□□□□□ -0.87
CPNE1-201ENST00000317677 SLC25A29Q8N8R3 303 aa9.64□□□□□ -0.87
CPNE1-201ENST00000317677 TOMM6Q96B49 74 aa9.64□□□□□ -0.87
CPNE1-201ENST00000317677 LINC00694P0DN24 101 aa9.63□□□□□ -0.87
CPNE1-201ENST00000317677 TRBV10-2A0A0K0K1G8 114 aa9.63□□□□□ -0.87
CPNE1-201ENST00000317677 A0A1W2PRX2 142 aa9.63□□□□□ -0.87
CPNE1-201ENST00000317677 ATXN8Q156A1 80 aa9.63□□□□□ -0.87
CPNE1-201ENST00000317677 ORMDL2Q53FV1 153 aa9.63□□□□□ -0.87
CPNE1-201ENST00000317677 J3KT08 172 aa9.62□□□□□ -0.87
CPNE1-201ENST00000317677 NDUFA7O95182 113 aa9.62□□□□□ -0.87
CPNE1-201ENST00000317677 LINC01620Q4KN68 170 aa9.62□□□□□ -0.87
CPNE1-201ENST00000317677 PAPPA-AS1Q5QFB9 102 aa9.62□□□□□ -0.87
CPNE1-201ENST00000317677 SCGB3A1Q96QR1 104 aa9.62□□□□□ -0.87
CPNE1-201ENST00000317677 A0A0J9YX75 114 aa9.61□□□□□ -0.87
CPNE1-201ENST00000317677 KLLNB2CW77 178 aa9.61□□□□□ -0.87
CPNE1-201ENST00000317677 IGHV3-33P01772 117 aa9.61□□□□□ -0.87
CPNE1-201ENST00000317677 C3orf22Q8N5N4 141 aa9.61□□□□□ -0.87
CPNE1-201ENST00000317677 CHCHD5Q9BSY4 110 aa9.61□□□□□ -0.87
CPNE1-201ENST00000317677 SORL1Q92673 2214 aa9.61□□□□□ -0.87
CPNE1-201ENST00000317677 A0A0B4J2C4 111 aa9.61□□□□□ -0.87
CPNE1-201ENST00000317677 ATP5G1P05496 136 aa9.61□□□□□ -0.87
CPNE1-201ENST00000317677 RNASE4P34096 147 aaKnown RBP9.61□□□□□ -0.87
CPNE1-201ENST00000317677 TMEM61Q8N0U2 210 aa9.61□□□□□ -0.87
CPNE1-201ENST00000317677 IGHV4-4A0A075B6R2 117 aa9.6□□□□□ -0.87
CPNE1-201ENST00000317677 ADARB2-AS1A8MUL3 147 aa9.6□□□□□ -0.87
CPNE1-201ENST00000317677 H3BMM0 161 aa9.6□□□□□ -0.87
CPNE1-201ENST00000317677 POM121L12Q8N7R1 296 aa9.6□□□□□ -0.87
CPNE1-201ENST00000317677 UBE2WQ96B02 151 aa9.6□□□□□ -0.87
CPNE1-201ENST00000317677 LINC00526Q96FQ7 95 aa9.6□□□□□ -0.87
CPNE1-201ENST00000317677 PEMTQ9UBM1 199 aa9.6□□□□□ -0.87
CPNE1-201ENST00000317677 TRAV21A0A0B4J279 112 aa9.59□□□□□ -0.87
CPNE1-201ENST00000317677 TEX49A0A1B0GTD5 131 aa9.59□□□□□ -0.87
CPNE1-201ENST00000317677 UQCRQO14949 82 aa9.59□□□□□ -0.87
CPNE1-201ENST00000317677 SPRY2O43597 315 aa9.59□□□□□ -0.87
CPNE1-201ENST00000317677 PROK1P58294 105 aa9.59□□□□□ -0.87
CPNE1-201ENST00000317677 TRPT1Q86TN4 253 aaKnown RBP9.59□□□□□ -0.87
CPNE1-201ENST00000317677 TMEM101Q96IK0 257 aa9.59□□□□□ -0.87
CPNE1-201ENST00000317677 SMIM2Q9BVW6 85 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 180.8 ms