RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 LINC00527Q9UJ94 153 aa3.51□□□□□ -1.85
PTPN13-201ENST00000316707 CDKN2A-AS1Q9UH64 79 aa3.51□□□□□ -1.85
PTPN13-201ENST00000316707 UBE2D4Q9Y2X8 147 aa3.51□□□□□ -1.85
PTPN13-201ENST00000316707 A6NDX4 124 aa3.51□□□□□ -1.85
PTPN13-201ENST00000316707 DEFB1P60022 68 aa3.51□□□□□ -1.85
PTPN13-201ENST00000316707 RETNQ9HD89 108 aa3.51□□□□□ -1.85
PTPN13-201ENST00000316707 CSDC2Q9Y534 153 aaKnown RBP3.51□□□□□ -1.85
PTPN13-201ENST00000316707 Q6JHZ5 121 aa3.5□□□□□ -1.85
PTPN13-201ENST00000316707 TRBV10-1A0A0K0K1A3 114 aa3.5□□□□□ -1.85
PTPN13-201ENST00000316707 RPL28P46779 137 aaKnown RBP3.5□□□□□ -1.85
PTPN13-201ENST00000316707 DAZ2Q13117 558 aaKnown RBP3.5□□□□□ -1.85
PTPN13-201ENST00000316707 DAZ4Q86SG3 579 aaKnown RBP3.5□□□□□ -1.85
PTPN13-201ENST00000316707 DAZ3Q9NR90 486 aaKnown RBP3.5□□□□□ -1.85
PTPN13-201ENST00000316707 LAMA3Q16787 3333 aa3.5□□□□□ -1.85
PTPN13-201ENST00000316707 TRBV12-3P01733 135 aa3.5□□□□□ -1.85
PTPN13-201ENST00000316707 DUX5Q96PT3 197 aa3.5□□□□□ -1.85
PTPN13-201ENST00000316707 FAM19A3Q7Z5A8 133 aa3.5□□□□□ -1.85
PTPN13-201ENST00000316707 SERP2Q8N6R1 65 aa3.5□□□□□ -1.85
PTPN13-201ENST00000316707 H3BUX3 64 aa3.5□□□□□ -1.85
PTPN13-201ENST00000316707 K7ENP7 123 aa3.5□□□□□ -1.85
PTPN13-201ENST00000316707 PRRC2CQ9Y520 2896 aaKnown RBP3.5□□□□□ -1.85
PTPN13-201ENST00000316707 RPL36AP83881 106 aaKnown RBP3.5□□□□□ -1.85
PTPN13-201ENST00000316707 SPINK13Q1W4C9 94 aa3.5□□□□□ -1.85
PTPN13-201ENST00000316707 RPL36ALQ969Q0 106 aaKnown RBP3.5□□□□□ -1.85
PTPN13-201ENST00000316707 LINC00467Q9BRT7 94 aa3.5□□□□□ -1.85
PTPN13-201ENST00000316707 BPESC1Q9GZL8 116 aa3.5□□□□□ -1.85
PTPN13-201ENST00000316707 ATRXP46100 2492 aa3.49□□□□□ -1.85
PTPN13-201ENST00000316707 CHCHD7Q9BUK0 85 aa3.49□□□□□ -1.85
PTPN13-201ENST00000316707 ANKRD11Q6UB99 2663 aaPredicted RBP3.49□□□□□ -1.85
PTPN13-201ENST00000316707 SPTBN5Q9NRC6 3674 aaKnown RBP3.49□□□□□ -1.85
PTPN13-201ENST00000316707 RPL18AQ02543 176 aaKnown RBP3.49□□□□□ -1.85
PTPN13-201ENST00000316707 CDH23Q9H251 3354 aa3.49□□□□□ -1.85
PTPN13-201ENST00000316707 A8MTW9 85 aa3.49□□□□□ -1.85
PTPN13-201ENST00000316707 MALP21145 153 aa3.49□□□□□ -1.85
PTPN13-201ENST00000316707 GRNP28799 593 aaKnown RBP3.49□□□□□ -1.85
PTPN13-201ENST00000316707 VCANP13611 3396 aa3.49□□□□□ -1.85
PTPN13-201ENST00000316707 SMIM9A6NGZ8 99 aa3.49□□□□□ -1.85
PTPN13-201ENST00000316707 NDUFC2-KCTD14E9PQ53 114 aa3.49□□□□□ -1.85
PTPN13-201ENST00000316707 K7ERS5 55 aa3.49□□□□□ -1.85
PTPN13-201ENST00000316707 BEAN1Q3B7T3 259 aa3.49□□□□□ -1.85
PTPN13-201ENST00000316707 VPREB1P12018 145 aa3.48□□□□□ -1.85
PTPN13-201ENST00000316707 SEC61GP60059 68 aa3.48□□□□□ -1.85
PTPN13-201ENST00000316707 LINC00242Q5T6M2 205 aa3.48□□□□□ -1.85
PTPN13-201ENST00000316707 TRAV12-2A0A075B6T6 113 aa3.48□□□□□ -1.85
PTPN13-201ENST00000316707 RBMY1BA6NDE4 496 aaKnown RBP3.48□□□□□ -1.85
PTPN13-201ENST00000316707 RBMY1EA6NEQ0 496 aaKnown RBP3.48□□□□□ -1.85
PTPN13-201ENST00000316707 RBMY1DP0C7P1 496 aaKnown RBP3.48□□□□□ -1.85
PTPN13-201ENST00000316707 RBMY1A1P0DJD3 496 aaKnown RBP3.48□□□□□ -1.85
PTPN13-201ENST00000316707 RBMY1CP0DJD4 496 aa3.48□□□□□ -1.85
PTPN13-201ENST00000316707 RANBP2P49792 3224 aaKnown RBP3.48□□□□□ -1.85
PTPN13-201ENST00000316707 JMJD7-PLA2G4BH0Y9G9 81 aa3.48□□□□□ -1.85
PTPN13-201ENST00000316707 DEFB104AQ8WTQ1 72 aa3.48□□□□□ -1.85
PTPN13-201ENST00000316707 C2CD3Q4AC94 2353 aa3.48□□□□□ -1.85
PTPN13-201ENST00000316707 ZGRF1Q86YA3 2104 aa3.48□□□□□ -1.85
PTPN13-201ENST00000316707 COL6A6A6NMZ7 2263 aa3.48□□□□□ -1.85
PTPN13-201ENST00000316707 hADV29S1A0JD25 119 aa3.48□□□□□ -1.85
PTPN13-201ENST00000316707 SMIM1B2RUZ4 78 aa3.48□□□□□ -1.85
PTPN13-201ENST00000316707 INSP01308 110 aa3.48□□□□□ -1.85
PTPN13-201ENST00000316707 IGKV3-20P01619 116 aa3.48□□□□□ -1.85
PTPN13-201ENST00000316707 LY6EQ16553 131 aa3.48□□□□□ -1.85
PTPN13-201ENST00000316707 RS1O15537 224 aa3.48□□□□□ -1.85
PTPN13-201ENST00000316707 TRBV10-3A0A0K0K1G6 114 aa3.47□□□□□ -1.85
PTPN13-201ENST00000316707 NPC2P61916 151 aa3.47□□□□□ -1.85
PTPN13-201ENST00000316707 CFHR3Q02985 330 aa3.47□□□□□ -1.85
PTPN13-201ENST00000316707 FAM104AQ969W3 186 aa3.47□□□□□ -1.85
PTPN13-201ENST00000316707 ZNF625Q96I27 306 aaPredicted RBP3.47□□□□□ -1.85
PTPN13-201ENST00000316707 IGHV3OR16-12A0A075B7B8 117 aa3.47□□□□□ -1.85
PTPN13-201ENST00000316707 LINC00694P0DN24 101 aa3.47□□□□□ -1.85
PTPN13-201ENST00000316707 SYNJ2BPP57105 145 aa3.47□□□□□ -1.85
PTPN13-201ENST00000316707 ADORA2A-AS1P86434 159 aa3.47□□□□□ -1.85
PTPN13-201ENST00000316707 CEMP1Q6PRD7 247 aaPredicted RBP3.47□□□□□ -1.85
PTPN13-201ENST00000316707 BCE1O60756 84 aa3.47□□□□□ -1.85
PTPN13-201ENST00000316707 ZFHX2Q9C0A1 2572 aaPredicted RBP3.47□□□□□ -1.85
PTPN13-201ENST00000316707 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.47□□□□□ -1.85
PTPN13-201ENST00000316707 IGKV2-29A2NJV5 120 aaPredicted RBP3.47□□□□□ -1.85
PTPN13-201ENST00000316707 USP17L23D6RBM5 183 aa3.47□□□□□ -1.85
PTPN13-201ENST00000316707 WIPF1O43516 503 aa3.47□□□□□ -1.85
PTPN13-201ENST00000316707 NDUFC2O95298 119 aa3.47□□□□□ -1.85
PTPN13-201ENST00000316707 BLCAPP62952 87 aa3.47□□□□□ -1.85
PTPN13-201ENST00000316707 BRD3OSQ6XYD6 125 aa3.47□□□□□ -1.85
PTPN13-201ENST00000316707 HIST1H4AP62805 103 aaKnown RBP3.46□□□□□ -1.85
PTPN13-201ENST00000316707 C11orf44Q8N8P7 122 aa3.46□□□□□ -1.85
PTPN13-201ENST00000316707 SND1-IT1Q9HBX3 110 aa3.46□□□□□ -1.85
PTPN13-201ENST00000316707 IBA57-AS1B1ANH7 110 aa3.46□□□□□ -1.86
PTPN13-201ENST00000316707 PSMB8P28062 276 aa3.46□□□□□ -1.86
PTPN13-201ENST00000316707 PTPRQQ9UMZ3 2332 aa3.46□□□□□ -1.86
PTPN13-201ENST00000316707 B4DSR2 109 aa3.46□□□□□ -1.86
PTPN13-201ENST00000316707 CHKB-CPT1BH3BT56 60 aa3.46□□□□□ -1.86
PTPN13-201ENST00000316707 TRAV13-1A0A0B4J241 112 aa3.46□□□□□ -1.86
PTPN13-201ENST00000316707 KNCNA6PVL3 124 aa3.46□□□□□ -1.86
PTPN13-201ENST00000316707 A8MZ25 164 aa3.46□□□□□ -1.86
PTPN13-201ENST00000316707 DEFB131AP59861 70 aa3.46□□□□□ -1.86
PTPN13-201ENST00000316707 PIEZO2Q9H5I5 2752 aa3.46□□□□□ -1.86
PTPN13-201ENST00000316707 TMEM86BQ8N661 226 aa3.46□□□□□ -1.86
PTPN13-201ENST00000316707 HTN1P15515 57 aa3.45□□□□□ -1.86
PTPN13-201ENST00000316707 IGHV3-73A0A0B4J1V6 119 aa3.45□□□□□ -1.86
PTPN13-201ENST00000316707 A0A0U1RRA0 63 aa3.45□□□□□ -1.86
PTPN13-201ENST00000316707 RNASE13Q5GAN3 156 aaKnown RBP3.45□□□□□ -1.86
PTPN13-201ENST00000316707 FAM19A5Q7Z5A7 132 aaPredicted RBP3.45□□□□□ -1.86
PTPN13-201ENST00000316707 Q8N2B8 174 aa3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms