RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 CXCL5P42830 114 aa8.14□□□□□ -1.11
CD44-201ENST00000263398 hADV29S1A0JD25 119 aa8.14□□□□□ -1.11
CD44-201ENST00000263398 PRB1P04280 392 aa8.14□□□□□ -1.11
CD44-201ENST00000263398 TANC2Q9HCD6 1990 aa8.14□□□□□ -1.11
CD44-201ENST00000263398 LY6LH3BQJ8 138 aa8.13□□□□□ -1.11
CD44-201ENST00000263398 FUSP35637 526 aaKnown RBP eCLIP8.13□□□□□ -1.11
CD44-201ENST00000263398 MIR7-3HGQ8N6C7 128 aa8.13□□□□□ -1.11
CD44-201ENST00000263398 DNAH14Q0VDD8 3507 aa8.13□□□□□ -1.11
CD44-201ENST00000263398 JMJD7-PLA2G4BH0Y9G9 81 aa8.13□□□□□ -1.11
CD44-201ENST00000263398 LECT2O14960 151 aa8.13□□□□□ -1.11
CD44-201ENST00000263398 ETDCA0A1B0GVM5 59 aa8.13□□□□□ -1.11
CD44-201ENST00000263398 K7EQG2 157 aa8.13□□□□□ -1.11
CD44-201ENST00000263398 CRIP1P50238 77 aa8.13□□□□□ -1.11
CD44-201ENST00000263398 ZMAT4Q9H898 229 aa8.13□□□□□ -1.11
CD44-201ENST00000263398 UBE2BP63146 152 aa8.13□□□□□ -1.11
CD44-201ENST00000263398 TM2D2Q9BX73 214 aa8.13□□□□□ -1.11
CD44-201ENST00000263398 ZFAND3Q9H8U3 227 aa8.13□□□□□ -1.11
CD44-201ENST00000263398 ESM1Q9NQ30 184 aa8.13□□□□□ -1.11
CD44-201ENST00000263398 ATOX1O00244 68 aa8.12□□□□□ -1.11
CD44-201ENST00000263398 Q6ZUT4 128 aa8.12□□□□□ -1.11
CD44-201ENST00000263398 CLEC2BQ92478 149 aa8.12□□□□□ -1.11
CD44-201ENST00000263398 PTH2Q96A98 100 aa8.12□□□□□ -1.11
CD44-201ENST00000263398 MAP6D1Q9H9H5 199 aa8.12□□□□□ -1.11
CD44-201ENST00000263398 H3BQ85 93 aa8.12□□□□□ -1.11
CD44-201ENST00000263398 NDUFA1O15239 70 aa8.12□□□□□ -1.11
CD44-201ENST00000263398 CEMP1Q6PRD7 247 aaPredicted RBP8.12□□□□□ -1.11
CD44-201ENST00000263398 NEXN-AS1Q8NBZ9 246 aa8.12□□□□□ -1.11
CD44-201ENST00000263398 DEFB105AQ8NG35 78 aa8.12□□□□□ -1.11
CD44-201ENST00000263398 MIAQ16674 131 aa8.12□□□□□ -1.11
CD44-201ENST00000263398 PRO0255Q9UI72 69 aa8.12□□□□□ -1.11
CD44-201ENST00000263398 IGHV4-4A0A075B6R2 117 aa8.11□□□□□ -1.11
CD44-201ENST00000263398 FAM236AA0A1B0GUQ0 79 aa8.11□□□□□ -1.11
CD44-201ENST00000263398 FAM236BA0A1B0GV22 79 aa8.11□□□□□ -1.11
CD44-201ENST00000263398 CITED2Q99967 270 aaPredicted RBP8.11□□□□□ -1.11
CD44-201ENST00000263398 IGKV3D-7A0A0C4DH55 119 aa8.11□□□□□ -1.11
CD44-201ENST00000263398 IGHV3-30P01768 117 aa8.11□□□□□ -1.11
CD44-201ENST00000263398 IGHV3-33P01772 117 aa8.11□□□□□ -1.11
CD44-201ENST00000263398 IGHV3-30-5P0DP03 117 aa8.11□□□□□ -1.11
CD44-201ENST00000263398 RBM3P98179 157 aaKnown RBP8.11□□□□□ -1.11
CD44-201ENST00000263398 A0A0J9YXY3 114 aa8.11□□□□□ -1.11
CD44-201ENST00000263398 SPAG11BQ08648 103 aa8.11□□□□□ -1.11
CD44-201ENST00000263398 NUP210LQ5VU65 1888 aa8.11□□□□□ -1.11
CD44-201ENST00000263398 ZFAND2AQ8N6M9 145 aa8.1□□□□□ -1.11
CD44-201ENST00000263398 LRP4O75096 1905 aa8.1□□□□□ -1.11
CD44-201ENST00000263398 TLN2Q9Y4G6 2542 aa8.1□□□□□ -1.11
CD44-201ENST00000263398 A0A1B0GX51 115 aa8.1□□□□□ -1.11
CD44-201ENST00000263398 CLPSL1A2RUU4 121 aa8.1□□□□□ -1.11
CD44-201ENST00000263398 TCL1BO95988 128 aa8.1□□□□□ -1.11
CD44-201ENST00000263398 CCL18P55774 89 aa8.1□□□□□ -1.11
CD44-201ENST00000263398 USP9XQ93008 2570 aaPredicted RBP8.1□□□□□ -1.11
CD44-201ENST00000263398 DEFB135Q30KP9 77 aa8.1□□□□□ -1.11
CD44-201ENST00000263398 SS18L2Q9UHA2 77 aa8.1□□□□□ -1.11
CD44-201ENST00000263398 U3KQK5 164 aa8.1□□□□□ -1.11
CD44-201ENST00000263398 IGLV2-11P01706 119 aa8.09□□□□□ -1.11
CD44-201ENST00000263398 RPL18AQ02543 176 aaKnown RBP8.09□□□□□ -1.11
CD44-201ENST00000263398 NFE4Q86UQ8 179 aa8.09□□□□□ -1.11
CD44-201ENST00000263398 VCANP13611 3396 aa8.09□□□□□ -1.11
CD44-201ENST00000263398 P0DMU3 169 aa8.09□□□□□ -1.11
CD44-201ENST00000263398 FAM231AP0DMU4 169 aa8.09□□□□□ -1.11
CD44-201ENST00000263398 FAM231CP0DMU5 169 aa8.09□□□□□ -1.11
CD44-201ENST00000263398 INSL3P51460 131 aa8.09□□□□□ -1.11
CD44-201ENST00000263398 SMAD5-AS1Q9Y6J3 95 aa8.09□□□□□ -1.11
CD44-201ENST00000263398 C20orf173Q96LM9 149 aa8.08□□□□□ -1.12
CD44-201ENST00000263398 TP73-AS1Q9UF72 201 aa8.08□□□□□ -1.12
CD44-201ENST00000263398 KLK12Q9UKR0 248 aa8.08□□□□□ -1.12
CD44-201ENST00000263398 IGKV2D-26A0A0A0MRZ7 120 aa8.08□□□□□ -1.12
CD44-201ENST00000263398 RNF185Q96GF1 192 aa8.08□□□□□ -1.12
CD44-201ENST00000263398 TMEM258P61165 79 aa8.08□□□□□ -1.12
CD44-201ENST00000263398 Q6ZTI0 123 aa8.08□□□□□ -1.12
CD44-201ENST00000263398 PKIGQ9Y2B9 76 aa8.08□□□□□ -1.12
CD44-201ENST00000263398 ZNF22P17026 224 aaPredicted RBP8.07□□□□□ -1.12
CD44-201ENST00000263398 NREPQ16612 68 aa8.07□□□□□ -1.12
CD44-201ENST00000263398 MRAPQ8TCY5 172 aa8.07□□□□□ -1.12
CD44-201ENST00000263398 CDKN2A-AS1Q9UH64 79 aa8.07□□□□□ -1.12
CD44-201ENST00000263398 ZFYVE26Q68DK2 2539 aa8.07□□□□□ -1.12
CD44-201ENST00000263398 HIST2H2BDQ6DRA6 164 aa8.07□□□□□ -1.12
CD44-201ENST00000263398 IGLV4-3A0A075B6K6 122 aa8.07□□□□□ -1.12
CD44-201ENST00000263398 C19orf84I3L1E1 186 aa8.07□□□□□ -1.12
CD44-201ENST00000263398 CFAP54Q96N23 3096 aa8.07□□□□□ -1.12
CD44-201ENST00000263398 TMEM256-PLSCR3K7ERE1 68 aa8.07□□□□□ -1.12
CD44-201ENST00000263398 PSMB8P28062 276 aa8.07□□□□□ -1.12
CD44-201ENST00000263398 LINC00643Q86TS7 51 aa8.07□□□□□ -1.12
CD44-201ENST00000263398 DIRC1Q969H9 104 aa8.07□□□□□ -1.12
CD44-201ENST00000263398 DNAJC9-AS1A6NH13 148 aa8.06□□□□□ -1.12
CD44-201ENST00000263398 M0QY20 66 aa8.06□□□□□ -1.12
CD44-201ENST00000263398 DEFB114Q30KQ6 69 aa8.06□□□□□ -1.12
CD44-201ENST00000263398 C11orf71Q6IPW1 123 aa8.06□□□□□ -1.12
CD44-201ENST00000263398 SMIM20Q8N5G0 67 aa8.06□□□□□ -1.12
CD44-201ENST00000263398 SPANXB1Q9NS25 103 aaPredicted RBP8.06□□□□□ -1.12
CD44-201ENST00000263398 NCR3O14931 201 aa8.06□□□□□ -1.12
CD44-201ENST00000263398 DEFB4AO15263 64 aa8.06□□□□□ -1.12
CD44-201ENST00000263398 MAPKAPK5-AS1Q8N8E1 139 aa8.06□□□□□ -1.12
CD44-201ENST00000263398 Q6YL49 198 aa8.05□□□□□ -1.12
CD44-201ENST00000263398 ARHGAP32A7KAX9 2087 aa8.05□□□□□ -1.12
CD44-201ENST00000263398 WDFY4Q6ZS81 3184 aa8.05□□□□□ -1.12
CD44-201ENST00000263398 TRBV27A0A0K0K1C4 114 aa8.05□□□□□ -1.12
CD44-201ENST00000263398 Q8N6K4 173 aa8.05□□□□□ -1.12
CD44-201ENST00000263398 LINC00467Q9BRT7 94 aa8.05□□□□□ -1.12
CD44-201ENST00000263398 PDE6GP18545 87 aa8.05□□□□□ -1.12
CD44-201ENST00000263398 USP9YO00507 2555 aaPredicted RBP8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 116.7 ms