RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 KIR2DL4Q99706 377 aa10.72□□□□□ -0.69
CCDC47-201ENST00000225726 JMJD1CQ15652 2540 aa10.71□□□□□ -0.7
CCDC47-201ENST00000225726 PLAC8L1A1L4L8 177 aa10.71□□□□□ -0.7
CCDC47-201ENST00000225726 C12orf54Q6X4T0 127 aa10.71□□□□□ -0.7
CCDC47-201ENST00000225726 ATRQ13535 2644 aa10.71□□□□□ -0.7
CCDC47-201ENST00000225726 NACAE9PAV3 2078 aa10.7□□□□□ -0.7
CCDC47-201ENST00000225726 HSD52Q0P140 79 aa10.7□□□□□ -0.7
CCDC47-201ENST00000225726 NOP10Q9NPE3 64 aaKnown RBP10.7□□□□□ -0.7
CCDC47-201ENST00000225726 IGHV3-53P01767 116 aa10.69□□□□□ -0.7
CCDC47-201ENST00000225726 Q6ZTI0 123 aa10.69□□□□□ -0.7
CCDC47-201ENST00000225726 OVOL2Q9BRP0 275 aa10.69□□□□□ -0.7
CCDC47-201ENST00000225726 Q6ZSN1 163 aa10.69□□□□□ -0.7
CCDC47-201ENST00000225726 KIR2DL5BQ8NHK3 375 aa10.69□□□□□ -0.7
CCDC47-201ENST00000225726 TRAV4A0A0B4J268 109 aa10.68□□□□□ -0.7
CCDC47-201ENST00000225726 LINC01549A6NIU2 74 aa10.68□□□□□ -0.7
CCDC47-201ENST00000225726 ETDBQ3ZM63 59 aa10.68□□□□□ -0.7
CCDC47-201ENST00000225726 C2orf66Q6UXQ4 117 aa10.68□□□□□ -0.7
CCDC47-201ENST00000225726 VWFP04275 2813 aa10.68□□□□□ -0.7
CCDC47-201ENST00000225726 GAGE12HA6NDE8 117 aa10.68□□□□□ -0.7
CCDC47-201ENST00000225726 I3L3M4 83 aa10.68□□□□□ -0.7
CCDC47-201ENST00000225726 SIVA1O15304 175 aa10.68□□□□□ -0.7
CCDC47-201ENST00000225726 RHOHQ15669 191 aa10.68□□□□□ -0.7
CCDC47-201ENST00000225726 SCGB3A1Q96QR1 104 aa10.68□□□□□ -0.7
CCDC47-201ENST00000225726 PRSS1P07477 247 aa10.67□□□□□ -0.7
CCDC47-201ENST00000225726 P0DMU3 169 aa10.67□□□□□ -0.7
CCDC47-201ENST00000225726 FAM231AP0DMU4 169 aa10.67□□□□□ -0.7
CCDC47-201ENST00000225726 FAM231CP0DMU5 169 aa10.67□□□□□ -0.7
CCDC47-201ENST00000225726 APOC4P55056 127 aa10.67□□□□□ -0.7
CCDC47-201ENST00000225726 DNAJC30Q96LL9 226 aa10.67□□□□□ -0.7
CCDC47-201ENST00000225726 TNFRSF18Q9Y5U5 241 aa10.67□□□□□ -0.7
CCDC47-201ENST00000225726 CYSLTR1Q9Y271 337 aa10.67□□□□□ -0.7
CCDC47-201ENST00000225726 K7ERJ3 54 aa10.67□□□□□ -0.7
CCDC47-201ENST00000225726 SMIM9A6NGZ8 99 aa10.66□□□□□ -0.7
CCDC47-201ENST00000225726 TSHBP01222 138 aa10.66□□□□□ -0.7
CCDC47-201ENST00000225726 NEXN-AS1Q8NBZ9 246 aa10.66□□□□□ -0.7
CCDC47-201ENST00000225726 RNF183Q96D59 192 aa10.66□□□□□ -0.7
CCDC47-201ENST00000225726 ODF1Q14990 250 aa10.66□□□□□ -0.7
CCDC47-201ENST00000225726 ZNF479Q96JC4 524 aa10.66□□□□□ -0.7
CCDC47-201ENST00000225726 TP53TG1Q9Y2A0 90 aa10.65□□□□□ -0.7
CCDC47-201ENST00000225726 WFDC2Q14508 124 aa10.64□□□□□ -0.71
CCDC47-201ENST00000225726 X6R8D5 127 aa10.64□□□□□ -0.71
CCDC47-201ENST00000225726 DKK2Q9UBU2 259 aa10.64□□□□□ -0.71
CCDC47-201ENST00000225726 TRAV12-1A0A0B4J245 112 aa10.64□□□□□ -0.71
CCDC47-201ENST00000225726 GAGE7O76087 117 aa10.64□□□□□ -0.71
CCDC47-201ENST00000225726 GAGE12FP0CL80 117 aa10.64□□□□□ -0.71
CCDC47-201ENST00000225726 GAGE12GP0CL81 117 aa10.64□□□□□ -0.71
CCDC47-201ENST00000225726 GAGE12IP0CL82 117 aa10.64□□□□□ -0.71
CCDC47-201ENST00000225726 GCSHP23434 173 aa10.63□□□□□ -0.71
CCDC47-201ENST00000225726 DEFB104AQ8WTQ1 72 aa10.63□□□□□ -0.71
CCDC47-201ENST00000225726 ZMAT4Q9H898 229 aa10.63□□□□□ -0.71
CCDC47-201ENST00000225726 NMUP48645 174 aa10.63□□□□□ -0.71
CCDC47-201ENST00000225726 TRGV2A0A075B6R0 118 aa10.63□□□□□ -0.71
CCDC47-201ENST00000225726 A0A087WX48 190 aa10.63□□□□□ -0.71
CCDC47-201ENST00000225726 OXLD1Q5BKU9 147 aa10.63□□□□□ -0.71
CCDC47-201ENST00000225726 K7EQD1 137 aa10.62□□□□□ -0.71
CCDC47-201ENST00000225726 TMEM141Q96I45 108 aa10.62□□□□□ -0.71
CCDC47-201ENST00000225726 Q9UF83 564 aa10.62□□□□□ -0.71
CCDC47-201ENST00000225726 IGHV4-30-4P0DP06 118 aa10.62□□□□□ -0.71
CCDC47-201ENST00000225726 TRBV10-1A0A0K0K1A3 114 aa10.61□□□□□ -0.71
CCDC47-201ENST00000225726 RPL39P62891 51 aaKnown RBP10.61□□□□□ -0.71
CCDC47-201ENST00000225726 TIMM17AQ99595 171 aa10.61□□□□□ -0.71
CCDC47-201ENST00000225726 IGIPA6NJ69 53 aa10.61□□□□□ -0.71
CCDC47-201ENST00000225726 EGFEM1PQ0D2K5 195 aa10.61□□□□□ -0.71
CCDC47-201ENST00000225726 TMEM97Q5BJF2 176 aa10.61□□□□□ -0.71
CCDC47-201ENST00000225726 BAALCQ8WXS3 180 aa10.61□□□□□ -0.71
CCDC47-201ENST00000225726 DPM2O94777 84 aa10.61□□□□□ -0.71
CCDC47-201ENST00000225726 C20orf203Q8NBC4 194 aa10.61□□□□□ -0.71
CCDC47-201ENST00000225726 TTTY13Q9BZ97 58 aa10.61□□□□□ -0.71
CCDC47-201ENST00000225726 IGKCP01834 107 aa10.6□□□□□ -0.71
CCDC47-201ENST00000225726 EMP1P54849 157 aa10.6□□□□□ -0.71
CCDC47-201ENST00000225726 DEFB135Q30KP9 77 aa10.6□□□□□ -0.71
CCDC47-201ENST00000225726 LINC00612Q8N6U2 182 aa10.6□□□□□ -0.71
CCDC47-201ENST00000225726 FBN1P35555 2871 aaKnown RBP10.6□□□□□ -0.71
CCDC47-201ENST00000225726 TRBV20-1A0A075B6N2 111 aa10.6□□□□□ -0.71
CCDC47-201ENST00000225726 FABP2P12104 132 aa10.6□□□□□ -0.71
CCDC47-201ENST00000225726 KRTAP10-11P60412 298 aa10.6□□□□□ -0.71
CCDC47-201ENST00000225726 NOTCH3Q9UM47 2321 aa10.59□□□□□ -0.71
CCDC47-201ENST00000225726 MRPL35Q9NZE8 188 aaKnown RBP10.59□□□□□ -0.71
CCDC47-201ENST00000225726 SPINK8P0C7L1 97 aa10.59□□□□□ -0.71
CCDC47-201ENST00000225726 SLC25A29Q8N8R3 303 aa10.59□□□□□ -0.71
CCDC47-201ENST00000225726 TRBV7-3A0A075B6L6 115 aa10.59□□□□□ -0.71
CCDC47-201ENST00000225726 RPL36AP83881 106 aaKnown RBP10.59□□□□□ -0.71
CCDC47-201ENST00000225726 RPL36ALQ969Q0 106 aaKnown RBP10.59□□□□□ -0.71
CCDC47-201ENST00000225726 K7EP34 96 aa10.58□□□□□ -0.72
CCDC47-201ENST00000225726 PLNP26678 52 aa10.58□□□□□ -0.72
CCDC47-201ENST00000225726 ZNRF2Q8NHG8 242 aa10.58□□□□□ -0.72
CCDC47-201ENST00000225726 ANAPC13Q9BS18 74 aa10.58□□□□□ -0.72
CCDC47-201ENST00000225726 F8VRH5 84 aa10.58□□□□□ -0.72
CCDC47-201ENST00000225726 H3BMG7 143 aa10.58□□□□□ -0.72
CCDC47-201ENST00000225726 OR11H2Q8NH07 326 aa10.58□□□□□ -0.72
CCDC47-201ENST00000225726 TRBV6-4A0A1B0GX49 114 aa10.57□□□□□ -0.72
CCDC47-201ENST00000225726 TRGV4A0A0C4DH28 118 aa10.57□□□□□ -0.72
CCDC47-201ENST00000225726 A6NJY4 79 aa10.57□□□□□ -0.72
CCDC47-201ENST00000225726 PHLDA1Q8WV24 401 aaPredicted RBP10.57□□□□□ -0.72
CCDC47-201ENST00000225726 PRSS29PA6NIE9 313 aa10.57□□□□□ -0.72
CCDC47-201ENST00000225726 LYRM9A8MSI8 78 aa10.57□□□□□ -0.72
CCDC47-201ENST00000225726 TRRAPQ9Y4A5 3859 aa10.56□□□□□ -0.72
CCDC47-201ENST00000225726 CHCHD7Q9BUK0 85 aa10.56□□□□□ -0.72
CCDC47-201ENST00000225726 HHLA3Q9XRX5 114 aa10.56□□□□□ -0.72
CCDC47-201ENST00000225726 IGHV3-38A0A0C4DH36 116 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms